NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F099863

Metagenome Family F099863

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099863
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 53 residues
Representative Sequence MDEEELKAIKKRERIFDFFWSLEEQQTILGLLKGRKMKKELKEHLKDKEVKNV
Number of Associated Samples 68
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Archaea
% of genes with valid RBS motifs 70.30 %
% of genes near scaffold ends (potentially truncated) 19.42 %
% of genes from short scaffolds (< 2000 bps) 84.47 %
Associated GOLD sequencing projects 60
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Archaea (46.602 % of family members)
NCBI Taxonomy ID 2157
Taxonomy All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(39.806 % of family members)
Environment Ontology (ENVO) Unclassified
(90.291 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(91.262 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64
1LPaug09P16500mDRAFT_10164283
2LPjun09P161000mDRAFT_10545331
3LPfeb10P161000mDRAFT_10395143
4LPaug09P202000mDRAFT_10475982
5JGI24006J15134_101642271
6JGI24006J15134_101929531
7JGI26061J44794_10113594
8Ga0066854_102590403
9Ga0066383_100293333
10Ga0066369_101336992
11Ga0066369_102989491
12Ga0066369_103130331
13Ga0066368_103313672
14Ga0066374_101204153
15Ga0066382_100710652
16Ga0066375_100385774
17Ga0075441_102535473
18Ga0075441_102570192
19Ga0075443_100087734
20Ga0068469_11448171
21Ga0068470_12553024
22Ga0068471_11661504
23Ga0068471_13720381
24Ga0068471_16071521
25Ga0068472_102506204
26Ga0068472_107026363
27Ga0068476_11370442
28Ga0068501_12424232
29Ga0068488_11315213
30Ga0068480_12070004
31Ga0068502_11378352
32Ga0068502_12219212
33Ga0068502_12675714
34Ga0068502_14037172
35Ga0068502_18962941
36Ga0068482_12315764
37Ga0068482_14038402
38Ga0068481_10772166
39Ga0068481_14326504
40Ga0068481_15468004
41Ga0068503_102130719
42Ga0068503_103475252
43Ga0068503_104759352
44Ga0068503_105084543
45Ga0068503_106271413
46Ga0068503_106811731
47Ga0068503_108182811
48Ga0068503_111345712
49Ga0068503_111689892
50Ga0068493_104206503
51Ga0099696_11041362
52Ga0066376_106605112
53Ga0066376_106677052
54Ga0066372_106416632
55Ga0075444_103540992
56Ga0075444_103654982
57Ga0099959_11485492
58Ga0114993_108748713
59Ga0114993_111696302
60Ga0114994_100811394
61Ga0114994_101012545
62Ga0114997_102254623
63Ga0114997_102462082
64Ga0115011_101323763
65Ga0133547_101939297
66Ga0133547_105830434
67Ga0133547_108980902
68Ga0133547_114423491
69Ga0211691_104736371
70Ga0211579_101100613
71Ga0226836_107712921
72Ga0232639_12475112
73Ga0232646_10860641
74Ga0209634_11545153
75Ga0208571_10336482
76Ga0208837_10401981
77Ga0208830_10592092
78Ga0207963_10076991
79Ga0208113_10160472
80Ga0207966_10192464
81Ga0208879_11024831
82Ga0208879_12451312
83Ga0209445_10771602
84Ga0209815_11341393
85Ga0209709_100740013
86Ga0209709_102475413
87Ga0209035_104691212
88Ga0209089_105600412
89Ga0209089_106773262
90Ga0209501_101168641
91Ga0209404_103482642
92Ga0257108_10064335
93Ga0257108_10462772
94Ga0257108_11740322
95Ga0257107_10609551
96Ga0257112_100439363
97Ga0257111_11358712
98Ga0302118_104491081
99Ga0310121_102438722
100Ga0310120_102451561
101Ga0315324_102058193
102Ga0315329_102698192
103Ga0310345_118862262
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 58.02%    β-sheet: 0.00%    Coil/Unstructured: 41.98%
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Variant

5101520253035404550MDEEELKAIKKRERIFDFFWSLEEQQTILGLLKGRKMKKELKEHLKDKEVKNVSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
62.1%37.9%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Deep Ocean
Seawater
Marine
Marine
Marine
Seawater
Marine
Hydrothermal Vent Fluids
Hydrothermal Vent Fluids
39.8%2.9%7.8%6.8%29.1%7.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
LPaug09P16500mDRAFT_101642833300000142MarineLKKEEEELAAIKKRERIFDFFWTLEEQRTILGLLKGRKMKKELKEHLKEKEVKNGR*
LPjun09P161000mDRAFT_105453313300000190MarineLKKDEEELATIKKKERIFDFFWTLEEQQTILGLLKGRKMKKELKEHLKEKE
LPfeb10P161000mDRAFT_103951433300000219MarineLKKDEEELAAIKKKERIFDFFWTLEEQQTILGLLKGRKMKKELKEHLKEKEAKNV*
LPaug09P202000mDRAFT_104759823300000323MarineMSEEELKAVKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKEHLKDKEVKNV*
JGI24006J15134_1016422713300001450MarineMDEEERKKKERIFDFFWSPEEQRTILGLLKGRKMKKELKEHLKKNAVKNEK*
JGI24006J15134_1019295313300001450MarineLVAIKKKERIFDFFWSAEEQQTILGLLKGRKMKKELKEHLKEK*
JGI26061J44794_101135943300002919MarineMDEEEMSEEELKAIKKKERIFDFFWSLEEQQTILGLLKGRKMKKELXKHLKDKEVKNV*
Ga0066854_1025904033300005431MarineLKKDEEELAAIKKKERIFDFFWTLEEQQTILGLLKGRKMKKELKEHLK
Ga0066383_1002933333300005953MarineMDEKEMSEEELKAIKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV*
Ga0066369_1013369923300005969MarineFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV*
Ga0066369_1029894913300005969MarineMDEEEMSEEELKAIKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKN
Ga0066369_1031303313300005969MarineMDEEEISEEESKAIKKKKRIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKN
Ga0066368_1033136723300006002MarineMSEEELKAVKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV*
Ga0066374_1012041533300006012MarineLKKDEEELATIKKKERIFDFFWTLEEQQTILGLLKGRKMKKELKEHLKEKEAKNV*
Ga0066382_1007106523300006013MarineMDEEEMSEEELKAVKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV*
Ga0066375_1003857743300006019MarineMDEEEMSEEELKAIKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV*
Ga0075441_1025354733300006164MarineMDEEEISEEELKAAKKKERIFDFFWTLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV*
Ga0075441_1025701923300006164MarineLKKDEEELKAIKKRERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV*
Ga0075443_1000877343300006165MarineLKIDKKRERIFDFFWTLEEQHTILGLLRGRKMKKELKEHLKEKEAKNV*
Ga0068469_114481713300006306MarineAIKKRERIFDFFWTLEEQQTILGLLKGRKMKKELKEHLKEKEAKSGR*
Ga0068470_125530243300006308MarineMDKEEMSEEELKAIKKKERIFDFFWTLEEQRTILGLLKGRKMKKELKEHLKQKEAKNGR*
Ga0068471_116615043300006310MarineLKKDEEELAAIKKKERIFDFFWTLEEQQTILGLLKGRKMKKELKEHLNERRK*
Ga0068471_137203813300006310MarineMSEEARKKIHRIFDFFWTLEEQNTILGLLKGRKMKKELKEHLKEKEAKNV*
Ga0068471_160715213300006310MarineLKKDKEELKAIKKKERIFVFFWTLEEQHTILGLLRGRKLKKELKEHLKKKEVK*
Ga0068472_1025062043300006313MarineMSEEELKAIKKKERIFDFFWTLEEQQTILGLLKGRKMKKELKEHLKEKEVKNGR*
Ga0068472_1070263633300006313MarineLKKEEEELAAIKKRERIFDFFWTLEEQHTILGLLKGRKMKKELKEHLKEKEVKNV*
Ga0068476_113704423300006324MarineLKKDEEELVAIKKKKERIFDFFWTLEEQHTILGLLRGRKMKKELKEHLKQKEAKNGR*
Ga0068501_124242323300006325MarineLKIDKKRERIFDFFWTLEEQQTILGLLKGRKMKKELKEHLKEKEAKNV*
Ga0068488_113152133300006331MarineMSEEELKAIKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV*
Ga0068480_120700043300006335MarineLKKDKEELKVIKKKERIFDFFWTLEEQHTILGLLRGRKMKKELKEHLKEKEVKNGR*
Ga0068502_113783523300006336MarineLKKDEEELAAIKKRERIFDFFWTLEEQHTILGLLKGRKLKKELKGHLKKKEVK*
Ga0068502_122192123300006336MarineMDEEELKAIKKKERIFDFFWTLEEQHTILGLLKGRKMKKELKEHLKNKEVK*
Ga0068502_126757143300006336MarineMDKRKERVFDFFWTLEEQRTILGLLKGKKMKKELKEHLK
Ga0068502_140371723300006336MarineLKIDKKKERIFDFFWTLEEQRTILGLLKGRKMKKELKEHLKDKEVK*
Ga0068502_189629413300006336MarineLKKDEEELVAIKKKERIFDFFWTLEEQQTILGLLKGRKMKKELKEHLKEKEVKNGR*
Ga0068482_123157643300006338MarineLKKDEEELAAIKKKERIFDFFWTLEEQQTILGLLKGRKMKKELKEHLKEKEVK*
Ga0068482_140384023300006338MarineMDEEEMSEEELKAVKKKERIFDFFWSLEEQQTILGLLKGIKMKKKLKDKKVKNV*
Ga0068481_107721663300006339MarineLKKDEEELAAIKKRERIFDFFWTLEEQRTILGLLKGRKMKKELKEHLKEKEVKNGR*
Ga0068481_143265043300006339MarineLKKDEEELAAIKKRERIFDFFWTLEEQQTILGLLKGRKMKKELKEHLKQKEAKNGR*
Ga0068481_154680043300006339MarineMDEEELNAIKKKERIFDFFWTLEEQRTILGLLRGRKMKKELKEHLKKKEVK*
Ga0068503_1021307193300006340MarineLKKDEEELATIKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKEHLKEKEAKNV*
Ga0068503_1034752523300006340MarineMDKEEMSEEELKAIKKRERIFDFFWTLEEQHTILGLLKGRKLKKELKGHLRKKETKK*
Ga0068503_1047593523300006340MarineLKKDEEELAAIKKRERIFDFFWTLEEQRTILGLLKGRKMKKELKEHLKEKEAKNGR*
Ga0068503_1050845433300006340MarineMDEEELKAIKKKERIFDFFWTLEEQQTILGLLKGRKMKKKLKDKKVKNV*
Ga0068503_1062714133300006340MarineMSEEEMSEEELKAIKKKERIFDFFWTLEEQHTILGLLKGRKMKKELKEHLKQKEAKNGR*
Ga0068503_1068117313300006340MarineMDKEEMSEEELKAIKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV*
Ga0068503_1081828113300006340MarineVKKKERIFDFFWSREEQYTILGLLKGRKMKKELKEHLKEEEVKNV*
Ga0068503_1113457123300006340MarineMDEEEMSEEELKAVKKKERMFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV*
Ga0068503_1116898923300006340MarineLKKEEEELAAIKKRERIFDFFWTLEEQHTILGLLKGRKLKKELKEHLKKKEVK*
Ga0068493_1042065033300006341MarineMSEEELKAIKKKERIFDFFWSFEEQQTILGLLKGRKMKKELKKHLKDKEVKNV*
Ga0099696_110413623300006346MarineMKKIISKEESKAIKKKERVFDFFWSLEEQQTILGLLKGIKMKKKLKDKKVKNV*
Ga0066376_1066051123300006900MarineMDEEEMSEEELKAVKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHL
Ga0066376_1066770523300006900MarineKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV*
Ga0066372_1064166323300006902MarineLKKDEEELVAIKKKERIFDFFWTLEEQQTILGLLKGRKMKKELKEHLKDKDVK*
Ga0075444_1035409923300006947MarineMDEEEMSEEELKAIKKKERIFDFFWTLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV*
Ga0075444_1036549823300006947MarineMDEEEMNEEELKAIKKRERIFDFFWTLEEQRTILGLLKGRKMKKELKEHLKEKEAKNGR*
Ga0099959_114854923300007160MarineKKKERIFDFFWTLEEQQTILGLLKGRKMKKELKEHLKDKEVKNV*
Ga0114993_1087487133300009409MarineMDEEEMSEEELEAIKKREKVFDFLWSPEERRTVLGLLKGRKMKKKLKVQDLKQK*
Ga0114993_1116963023300009409MarineLKKDEEELKAIKKRERIFDFFWTLEEQRTILGLLKGRKMKKELKEHLKEKEAKNGR*
Ga0114994_1008113943300009420MarineLKIDKKKERIFDFFWTLEEQRTILGLLRGRKMKKELKEHLKEKEAKNV*
Ga0114994_1010125453300009420MarineLKIDKKKGRIFDFFWTLEEQRTILGLLKGRKMKKELKEHLKEKEAKNGR*
Ga0114997_1022546233300009425MarineLKKDEEELVAIKKRERIFDFFWTLEEQRTILGLLKGRKMKKELKEHLKEKEAKNGR*
Ga0114997_1024620823300009425MarineLKIDKKKERIFDFFWTLEEQHTILGLLRGRKMKKELKEHLKEKEAKNV*
Ga0115011_1013237633300009593MarineMDEEELKAIKKKERMFDFLWSLEEQQTILGLLKGRKMKKELKKHLKDKDVK*
Ga0133547_1019392973300010883MarineMDEEELKAIKKKERIFDFFWSPEEQRTILGLLKGRKMKKELKEHLKQKEAKDE*
Ga0133547_1058304343300010883MarineMDEEELEVIKKKERIFDFFWSREEQQTILGLLKGRKMKKELKEHLKNMEMK*
Ga0133547_1089809023300010883MarineLKIDKKRERIFDFFWTLEEQHTILGLLRGRKMKKELKEHLKQKEIKNG*
Ga0133547_1144234913300010883MarineKDKKKERIFDFLWSLEEQHTILGLLRGRKMKKELKEHLREKEAKNV*
Ga0211691_1047363713300020447MarineEELKVIKKKERIFDFFWTLEEQRTILGLLKGRKMKKELKEHLKDKEVK
Ga0211579_1011006133300020472MarineMDKKERKKKHRIFDFFWTLEEQNTILGLLKGRKMKKELKEHLKEKEGKNV
Ga0226836_1077129213300021792Hydrothermal Vent FluidsMSEEELKAIKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV
Ga0232639_124751123300021977Hydrothermal Vent FluidsMSEEELKAVKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV
Ga0232646_108606413300021978Hydrothermal Vent FluidsMDEEELKAVKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV
Ga0209634_115451533300025138MarineMDEEERKKKERIFDFFWSPEEQRTILGLLKGRKMKKELKEHLKKNAVKNEK
Ga0208571_103364823300025232Deep OceanMDEKEMSEEELKAIKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV
Ga0208837_104019813300025234Deep OceanMSEEELKAVKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKNLKDKEVKNV
Ga0208830_105920923300025238Deep OceanSEEESKAIKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV
Ga0207963_100769913300026080MarineSEEELKAVKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV
Ga0208113_101604723300026087MarineMSEEESKAIKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV
Ga0207966_101924643300026119MarineMDEEEMSEEELKAVKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV
Ga0208879_110248313300026253MarineMDEEELKAIKKKEGIFDHLWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKN
Ga0208879_124513123300026253MarineLKIDKKRERIFDFFWTLEEQHTILGLLRGRKMKKELKEHLKEKEAKNV
Ga0209445_107716023300027700MarineMNEEELKAIKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV
Ga0209815_113413933300027714MarineMDEEEISEEELKAAKKKERIFDFFWTLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV
Ga0209709_1007400133300027779MarineLKKDEEELKAIKKRERIFDFFWTLEEQRTILGLLKGRKMKKELKEHLKEKEAKNGR
Ga0209709_1024754133300027779MarineLKIDKKKERIFDFFWTLEEQRTILGLLRGRKMKKELKEHLKEKEAKNV
Ga0209035_1046912123300027827MarineMDEEGRKKKERIFDFFWSPEEQRTILGLLKGRKMKKELKEHLKEK
Ga0209089_1056004123300027838MarineLKIDKKKERIFEFFWTLEEQRTILGLLRGRKMKKELKEHLKEKEAKNV
Ga0209089_1067732623300027838MarineLKKEEEELAAIKKRERIFDFFWTLEEQRTILGLLKGRKMKKELKEHLKEKEVKNGR
Ga0209501_1011686413300027844MarineKKERIFEFFWSPEEQRTILGLLRGRKMKKELKKHLKDKEVTNV
Ga0209404_1034826423300027906MarineMDEEELKAIKKKERMFDFLWSLEEQQTILGLLKGRKMKKELKKHLKDKDVK
Ga0257108_100643353300028190MarineLKKDEEELAAIKKKERIFDFFWTLEEQQTILGLLKGRKMKKELKEHLKEKEAKNV
Ga0257108_104627723300028190MarineLKKEEEELAAIKKRERIFDFFWTLEEQHTILGLLRGRKLKKELKEHLKEKEAKNGR
Ga0257108_117403223300028190MarineMDEEELKAIKKRERIFDFFWSLEEQQTILGLLKGRKMKKELKEHLKDKEVKNV
Ga0257107_106095513300028192MarineLKKEEEELAAIKKKERIFDFFWTLEEQRTILGLLKGRKMKKELKEHLKEKEVKNGR
Ga0257112_1004393633300028489MarineLKKDEEELATIKKKERIFDFFWTLEEQQTILGLLKGRKMKKELKEHLKEKEAKNV
Ga0257111_113587123300028535MarineLKIDKKRERIFDFFWTLEEQQTILGLLKGRKMKKELKEHLREKEAKNV
Ga0302118_1044910813300031627MarineLKKDKEETVDEEELEAVKKKERIFDFFWSPEEQRTILGLLKGRKMKKELKEHLKEK
Ga0310121_1024387223300031801MarineMDEEELEVIKKKERIFDFFWSREEQQTILGLLKGRKMKKELKEHLKNMEMK
Ga0310120_1024515613300031803MarineMDEEELEVIKKKERIFDFFWSREEQQTILGLLKGRKMKKELKEHMKNMEMK
Ga0315324_1020581933300032019SeawaterLKKEEEELAAIKKRERIFDFFWTLEEQHTILGLLKGRKLKKELKEHLKKKEVK
Ga0315329_1026981923300032048SeawaterLKKDEEELAAIKKRERIFDFFWTLEEQHTILGLLKGRKLKKELKEHLKKKEVK
Ga0310345_1188622623300032278SeawaterMDEEEPKALKKKLRVFDSFWSLEEQQTILGLLKGRKMKKKMKDEKGKDV


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