Metagenome / Metatranscriptome Family F099830

Basic Information
Family ID	F099830
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	65 residues
Representative Sequence	MTSIKIFKNADSQNLENDVNKFLKGYENYITSVSLMTFIKDQLPTFLAVVTIQEKIPPVNVETANTK
Number of Associated Samples	87
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	32.04 %
% of genes from short scaffolds (< 2000 bps)	75.73 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Archaea (94.175 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere (11.650 % of family members)
Environment Ontology (ENVO)	Unclassified (28.155 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.631 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.22% β-sheet: 2.99% Coil/Unstructured: 41.79%
Feature Viewer

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Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF14870	PSII_BNR	1.94
PF08240	ADH_N	1.94
PF01344	Kelch_1	0.97
PF10017	Methyltransf_33	0.97
PF00565	SNase	0.97
PF05067	Mn_catalase	0.97
PF00493	MCM	0.97
PF00589	Phage_integrase	0.97
PF00211	Guanylate_cyc	0.97
PF12867	DinB_2	0.97
PF00230	MIP	0.97
PF01544	CorA	0.97
PF09754	PAC2	0.97
PF07452	CHRD	0.97
PF04945	YHS	0.97
PF00827	Ribosomal_L15e	0.97
PF01336	tRNA_anti-codon	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.97
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	0.97
COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	Replication, recombination and repair [L]	0.97
COG1632	Ribosomal protein L15E	Translation, ribosomal structure and biogenesis [J]	0.97
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.97
COG3546	Mn-containing catalase (includes spore coat protein CotJC)	Inorganic ion transport and metabolism [P]	0.97

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.15 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.15 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	94.17 %
Unclassified	root	N/A	4.85 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.97 %

Name	Rank	Taxonomy	Distribution
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	9.71 %
Unclassified	root	N/A	4.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.97 %

Name	Rank	Taxonomy	Distribution
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	7.77 %
Unclassified	root	N/A	4.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Nitrosopumilales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	5.83 %
Unclassified	root	N/A	4.85 %
Nitrososphaeria	class	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
unclassified Nitrosopumilales	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales	5.83 %
Unclassified	root	N/A	4.85 %
Nitrososphaerales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	5.83 %
Unclassified	root	N/A	4.85 %
Nitrososphaeraceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	5.83 %
Unclassified	root	N/A	4.85 %
Nitrososphaera	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	0.97 %
Candidatus Nitrosocosmicus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	0.97 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886007\|SwRhRL2b_contig_2385081	All Organisms → cellular organisms → Archaea	928	Open in IMG/M
2209111006\|2214608855	All Organisms → cellular organisms → Archaea	1128	Open in IMG/M
3300000041\|ARcpr5oldR_c012491	All Organisms → cellular organisms → Archaea	727	Open in IMG/M
3300000043\|ARcpr5yngRDRAFT_c005804	All Organisms → cellular organisms → Archaea	1130	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1008382	All Organisms → cellular organisms → Archaea	1154	Open in IMG/M
3300000787\|JGI11643J11755_11537181	All Organisms → cellular organisms → Archaea	626	Open in IMG/M
3300000858\|JGI10213J12805_10378482	All Organisms → cellular organisms → Archaea	1280	Open in IMG/M
3300001431\|F14TB_101716065	All Organisms → cellular organisms → Archaea	819	Open in IMG/M
3300002099\|JGI24808J26613_1001755	All Organisms → cellular organisms → Archaea	7175	Open in IMG/M
3300002099\|JGI24808J26613_1004582	All Organisms → cellular organisms → Archaea	3736	Open in IMG/M
3300002099\|JGI24808J26613_1012285	All Organisms → cellular organisms → Archaea	1600	Open in IMG/M
3300002099\|JGI24808J26613_1025459	All Organisms → cellular organisms → Archaea	890	Open in IMG/M
3300004479\|Ga0062595_101851145	All Organisms → cellular organisms → Archaea	576	Open in IMG/M
3300005105\|Ga0066812_1013609	All Organisms → cellular organisms → Archaea	608	Open in IMG/M
3300005168\|Ga0066809_10010595	Not Available	1725	Open in IMG/M
3300005169\|Ga0066810_10008118	All Organisms → cellular organisms → Archaea	1476	Open in IMG/M
3300005186\|Ga0066676_10021831	Not Available	3360	Open in IMG/M
3300005186\|Ga0066676_10170927	All Organisms → cellular organisms → Archaea	1380	Open in IMG/M
3300005269\|Ga0065706_1000321	All Organisms → cellular organisms → Archaea	8098	Open in IMG/M
3300005269\|Ga0065706_1002149	All Organisms → cellular organisms → Archaea	1106	Open in IMG/M
3300005276\|Ga0065717_1003365	All Organisms → cellular organisms → Archaea	1300	Open in IMG/M
3300005277\|Ga0065716_1000188	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	2670	Open in IMG/M
3300005289\|Ga0065704_10090094	All Organisms → cellular organisms → Archaea	2805	Open in IMG/M
3300005293\|Ga0065715_10090702	All Organisms → cellular organisms → Archaea	6587	Open in IMG/M
3300005294\|Ga0065705_10000782	All Organisms → cellular organisms → Archaea	1226	Open in IMG/M
3300005294\|Ga0065705_10609033	All Organisms → cellular organisms → Archaea	688	Open in IMG/M
3300005295\|Ga0065707_10024056	All Organisms → cellular organisms → Archaea	2063	Open in IMG/M
3300005295\|Ga0065707_10081375	All Organisms → cellular organisms → Archaea	661	Open in IMG/M
3300005341\|Ga0070691_10341260	All Organisms → cellular organisms → Archaea	829	Open in IMG/M
3300005558\|Ga0066698_11044077	All Organisms → cellular organisms → Archaea	518	Open in IMG/M
3300005719\|Ga0068861_100642939	All Organisms → cellular organisms → Archaea	979	Open in IMG/M
3300005937\|Ga0081455_10156664	All Organisms → cellular organisms → Archaea	1750	Open in IMG/M
3300006049\|Ga0075417_10035471	All Organisms → cellular organisms → Archaea → TACK group	2090	Open in IMG/M
3300006169\|Ga0082029_1381211	Not Available	2464	Open in IMG/M
3300006577\|Ga0074050_10034066	All Organisms → cellular organisms → Archaea	517	Open in IMG/M
3300006844\|Ga0075428_100076171	All Organisms → cellular organisms → Archaea	3663	Open in IMG/M
3300009094\|Ga0111539_10740404	All Organisms → cellular organisms → Archaea	1144	Open in IMG/M
3300009147\|Ga0114129_10508086	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1573	Open in IMG/M
3300009162\|Ga0075423_10651373	All Organisms → cellular organisms → Archaea	1111	Open in IMG/M
3300009174\|Ga0105241_12618030	All Organisms → cellular organisms → Archaea	507	Open in IMG/M
3300009553\|Ga0105249_10166807	All Organisms → cellular organisms → Archaea	2132	Open in IMG/M
3300010323\|Ga0134086_10410423	All Organisms → cellular organisms → Archaea	546	Open in IMG/M
3300010358\|Ga0126370_11794937	All Organisms → cellular organisms → Archaea	593	Open in IMG/M
3300010362\|Ga0126377_10882405	All Organisms → cellular organisms → Archaea	956	Open in IMG/M
3300012474\|Ga0157356_1004004	All Organisms → cellular organisms → Archaea	787	Open in IMG/M
3300012477\|Ga0157336_1029012	All Organisms → cellular organisms → Archaea	545	Open in IMG/M
3300012481\|Ga0157320_1000077	All Organisms → cellular organisms → Archaea	2664	Open in IMG/M
3300012495\|Ga0157323_1006835	All Organisms → cellular organisms → Archaea	807	Open in IMG/M
3300012502\|Ga0157347_1030941	All Organisms → cellular organisms → Archaea	670	Open in IMG/M
3300012517\|Ga0157354_1034783	All Organisms → cellular organisms → Archaea	660	Open in IMG/M
3300012948\|Ga0126375_10045716	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	2295	Open in IMG/M
3300014969\|Ga0157376_12417733	All Organisms → cellular organisms → Archaea	565	Open in IMG/M
3300015371\|Ga0132258_11602874	All Organisms → cellular organisms → Archaea	1643	Open in IMG/M
3300015371\|Ga0132258_13341399	All Organisms → cellular organisms → Archaea	1103	Open in IMG/M
3300015371\|Ga0132258_13489548	All Organisms → cellular organisms → Archaea	1077	Open in IMG/M
3300015371\|Ga0132258_13878486	All Organisms → cellular organisms → Archaea	1017	Open in IMG/M
3300015372\|Ga0132256_100772550	All Organisms → cellular organisms → Archaea	1077	Open in IMG/M
3300015373\|Ga0132257_103785064	All Organisms → cellular organisms → Archaea	550	Open in IMG/M
3300015374\|Ga0132255_105211102	All Organisms → cellular organisms → Archaea	550	Open in IMG/M
3300015374\|Ga0132255_105666569	All Organisms → cellular organisms → Archaea	528	Open in IMG/M
3300018000\|Ga0184604_10021165	All Organisms → cellular organisms → Archaea	1542	Open in IMG/M
3300018027\|Ga0184605_10001204	All Organisms → cellular organisms → Archaea	8203	Open in IMG/M
3300018027\|Ga0184605_10003248	All Organisms → cellular organisms → Archaea	5606	Open in IMG/M
3300018027\|Ga0184605_10039603	All Organisms → cellular organisms → Archaea	1976	Open in IMG/M
3300018028\|Ga0184608_10000550	Not Available	10154	Open in IMG/M
3300018031\|Ga0184634_10377875	All Organisms → cellular organisms → Archaea	649	Open in IMG/M
3300018067\|Ga0184611_1037938	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	1570	Open in IMG/M
3300018072\|Ga0184635_10121318	All Organisms → cellular organisms → Archaea	1039	Open in IMG/M
3300018074\|Ga0184640_10071292	All Organisms → cellular organisms → Archaea	1471	Open in IMG/M
3300018081\|Ga0184625_10004239	All Organisms → cellular organisms → Archaea	6338	Open in IMG/M
3300018081\|Ga0184625_10359810	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	756	Open in IMG/M
3300019279\|Ga0184642_1526766	All Organisms → cellular organisms → Archaea	994	Open in IMG/M
3300019868\|Ga0193720_1062595	All Organisms → cellular organisms → Archaea	513	Open in IMG/M
3300021951\|Ga0222624_1284776	All Organisms → cellular organisms → Archaea	508	Open in IMG/M
3300022534\|Ga0224452_1133991	All Organisms → cellular organisms → Archaea	762	Open in IMG/M
3300022694\|Ga0222623_10025833	All Organisms → cellular organisms → Archaea	2212	Open in IMG/M
3300022756\|Ga0222622_10002015	All Organisms → cellular organisms → Archaea	8474	Open in IMG/M
3300025290\|Ga0207673_1067909	All Organisms → cellular organisms → Archaea	508	Open in IMG/M
3300025315\|Ga0207697_10113708	All Organisms → cellular organisms → Archaea	1160	Open in IMG/M
3300025911\|Ga0207654_11425662	All Organisms → cellular organisms → Archaea	505	Open in IMG/M
3300025926\|Ga0207659_10243778	All Organisms → cellular organisms → Archaea	1455	Open in IMG/M
3300025940\|Ga0207691_10372542	All Organisms → cellular organisms → Archaea	1220	Open in IMG/M
3300026324\|Ga0209470_1004274	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	9570	Open in IMG/M
3300026324\|Ga0209470_1103265	All Organisms → cellular organisms → Archaea	1278	Open in IMG/M
3300026693\|Ga0208709_105414	All Organisms → cellular organisms → Archaea	532	Open in IMG/M
3300026750\|Ga0207483_100844	All Organisms → cellular organisms → Archaea	1217	Open in IMG/M
3300026802\|Ga0207511_106903	All Organisms → cellular organisms → Archaea	542	Open in IMG/M
3300026973\|Ga0207479_100433	All Organisms → cellular organisms → Archaea	1610	Open in IMG/M
3300027018\|Ga0208475_1026115	All Organisms → cellular organisms → Archaea	575	Open in IMG/M
3300027472\|Ga0207449_102662	All Organisms → cellular organisms → Archaea	541	Open in IMG/M
3300027523\|Ga0208890_1092628	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	503	Open in IMG/M
3300027560\|Ga0207981_1002946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3034	Open in IMG/M
3300027873\|Ga0209814_10009075	All Organisms → cellular organisms → Archaea → TACK group	3896	Open in IMG/M
3300027880\|Ga0209481_10027150	Not Available	2570	Open in IMG/M
3300027880\|Ga0209481_10234488	All Organisms → cellular organisms → Archaea	922	Open in IMG/M
3300028744\|Ga0307318_10109868	All Organisms → cellular organisms → Archaea	936	Open in IMG/M
3300028796\|Ga0307287_10144377	All Organisms → cellular organisms → Archaea	904	Open in IMG/M
3300028814\|Ga0307302_10517209	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	593	Open in IMG/M
3300028878\|Ga0307278_10085800	All Organisms → cellular organisms → Archaea	1417	Open in IMG/M
3300031716\|Ga0310813_10101965	All Organisms → cellular organisms → Archaea	2233	Open in IMG/M
3300031892\|Ga0310893_10290803	All Organisms → cellular organisms → Archaea	689	Open in IMG/M
3300032205\|Ga0307472_100565485	All Organisms → cellular organisms → Archaea	996	Open in IMG/M
3300034820\|Ga0373959_0120258	All Organisms → cellular organisms → Archaea	641	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	62.14%
Host-Associated	Host-Associated	37.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	46.60%
Plants	Host-Associated → Plants	37.86%
Aquatic	Environmental → Aquatic	15.53%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.53%
Sediment	Environmental → Aquatic → Sediment	13.59%
Freshwater	Environmental → Aquatic → Freshwater	1.94%
Roots	Host-Associated → Plants → Roots	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	14.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	13.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.80%
Loam	Environmental → Terrestrial → Soil → Loam	4.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.16%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	14.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	13.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.97%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.97%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	11.65%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	10.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.71%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.91%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.94%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.97%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Arabidopsis Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
2209111006	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated	Open in IMG/M
3300000043	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 young rhizosphere	Host-Associated	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002099	Soil microbial communities from Manhattan, Kansas, USA - Sample 400um MDA	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005105	Soil and rhizosphere microbial communities from Laval, Canada - mgHPC	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005269	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 Bulk Soil	Environmental	Open in IMG/M
3300005276	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5	Host-Associated	Open in IMG/M
3300005277	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012474	Unplanted soil (control) microbial communities from North Carolina - M.Soil.3.yng.040610	Environmental	Open in IMG/M
3300012477	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.3.yng.040610	Host-Associated	Open in IMG/M
3300012481	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610	Host-Associated	Open in IMG/M
3300012495	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.old.040610	Host-Associated	Open in IMG/M
3300012502	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610	Host-Associated	Open in IMG/M
3300012517	Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019868	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s1	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025290	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Host-Associated	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026693	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN595 (SPAdes)	Environmental	Open in IMG/M
3300026750	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-B (SPAdes)	Environmental	Open in IMG/M
3300026802	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-C (SPAdes)	Environmental	Open in IMG/M
3300026973	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-C (SPAdes)	Environmental	Open in IMG/M
3300027018	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN575 (SPAdes)	Environmental	Open in IMG/M
3300027472	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-D (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL2b_0547.00003640	2162886007	Switchgrass Rhizosphere	MTSIKIFKNADSQNLENDVNKFLKSYENYITSVSLMTFIKDQLPTFLAVVTIQEKIPPVNVETANTK
2213644507	2209111006	Arabidopsis Rhizosphere	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLAIVTIQEKIHSVKPETPDNN
ARcpr5oldR_0124912	3300000041	Arabidopsis Rhizosphere	QSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIQSKVETSDNNQTIHKQMK*
ARcpr5yngRDRAFT_0058042	3300000043	Arabidopsis Rhizosphere	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIQSKVETSDNNQTIHKQMK*
KanNP_Total_noBrdU_T14TCDRAFT_10083824	3300000596	Soil	MTSIKIFKNHDSQNLENDVNKFLKSYENYITSVSLMTYIKDSLPIFVALVIILEEKIPPVNVETDSSS*
JGI11643J11755_115371812	3300000787	Soil	MTSIKIFKNHDSQNLENDVNNFLKGYENYITSVSLMTYIKDSLPIFVALVTILEEKIPPVNVETDSSS*
JGI10213J12805_103784821	3300000858	Soil	MTSIKIFKNRESQNLENDVNKFLKGHENYITNVSLMTFVWDSSPEFLALVTIQENIPPINVETANNK*
F14TB_1017160652	3300001431	Soil	MTSIKIFKNHDSQNLENDVNKFLKSYENYITSVSLMTYIKDSLPIFVALVTILEEKIPPVNVETDSSS*
JGI24808J26613_10017552	3300002099	Soil	MTSIKTFKSHKDQYLEIDVKKSLQRYENYITSESLTTYIKDELPTFPALVTNKKKYHQQT
JGI24808J26613_10045821	3300002099	Soil	MTSIKIFKNHDSQNLENDVNKFLQGYGNYITSVSLMTYIKDSLPIFVALVTILEEKIPPVNVETDSSS*
JGI24808J26613_10122851	3300002099	Soil	MTSIKIFKNHDSQNLENDVNKFLKSYENYITSVSLMTYIKDSLPIFVALVIILEEKIPPVSAETDSSS*
JGI24808J26613_10254592	3300002099	Soil	MTSIKIFKNHDSQNLENDVNKFLKGYENYITSVSLMTYIKDSLPIFVALVIILEEKIP
Ga0062595_1018511451	3300004479	Soil	MTSIKIFKNADSQNLENDVNKFLKGYENYITSVSLMTFIKDQLPTFLAVVTIQEKIPPVKVETPNTK*
Ga0066812_10136092	3300005105	Soil	MTSIKIFKNADSQNLENDVNKFLKGYENYITSVSLMTFIKDQLPTFLAVVTIQEKIPPVNVETANTK*
Ga0066809_100105951	3300005168	Soil	MTSIKIFKNADSQNLENDVNKFLKGYENYLTSVSLMTFIKDQLPTFLAVVTIQEKIPPVNVETANTK*
Ga0066810_100081182	3300005169	Soil	MTSIKIFKNADSQNLENDVNKFLKGYENYITSVSLMTFFKNEALTFLAVVTIQGKIPPVNVETADAK*
Ga0066676_100218315	3300005186	Soil	MTSIKIFKNHDSQNLENDVNKFLQGYENYLTSVSLMTFIKDSSPIFLAVVTILEEKIPPVNVETADTK*
Ga0066676_101709271	3300005186	Soil	MTSIKIFKNHASQNLENDVNKFLQGYENYITSVSLMTYIKDSLPIFVALVTILEEKIPPVNVETADTK*
Ga0065706_100032113	3300005269	Switchgrass Rhizosphere	MTSIKIFKNHDSQNLENDVNKFLQGYENYITSVSLMTYIKDSLPIFVALVTILEEKIPPVNVETANNK*
Ga0065706_10021491	3300005269	Switchgrass Rhizosphere	MTSIKXFKNADSQNLENDVNKFLKSYENYITSVSLMTFIKDQLPTFLAVVTIQEKIPPVNVETANTK*
Ga0065717_10033651	3300005276	Arabidopsis Rhizosphere	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLAIVTIQEKIHSVKPETPDNN*
Ga0065716_10001882	3300005277	Arabidopsis Rhizosphere	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKXQEPTFLAXVTIQEKIHSVKPETPXNN*
Ga0065704_100900943	3300005289	Switchgrass Rhizosphere	MTSIKIFKNADSQNLENDVNKFLKSYENYITSVSLMTFIKDQLPTFLAVVTIQEKIPPVNVETANTK*
Ga0065715_100907022	3300005293	Miscanthus Rhizosphere	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIHSVKPETPDNN*
Ga0065705_100007822	3300005294	Switchgrass Rhizosphere	MTSIKIFKNHDSQNLENDVNKFLQGYENYIXSVSLMTYIKDSLPIFVALVTILEEKIPPVNVETANNK*
Ga0065705_106090331	3300005294	Switchgrass Rhizosphere	MTSIKIFKNHDSQNLENDVNKFLQGYENYITSVSLMTYIKDSLPIFVALVTILEEKIPPVNVETANNE*
Ga0065707_100240564	3300005295	Switchgrass Rhizosphere	MTSIKIFKNHDSQNLENDVNKFLQGYENYIISVSLMTYIKDSLPIFVALVTILEEKIPPVNVETANNK*
Ga0065707_100813752	3300005295	Switchgrass Rhizosphere	MTSIKIFKNHDSQNLENDVNKFLQGYENYITSVSLMTYIKDSLPIFVALVTILEEKIPPVNLETANNE*
Ga0070691_103412601	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYVKDQEPTFLALVTIQEKIHSVKPETSDNN*
Ga0066698_110440771	3300005558	Soil	MTSIKIFKNHETQNLENDVNKFLKGYENYITSVSLMSFILDQRPTFLAVVSILEEKITPVNVETADTE*
Ga0068861_1006429391	3300005719	Switchgrass Rhizosphere	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIHSVKPETSDNN*
Ga0081455_101566643	3300005937	Tabebuia Heterophylla Rhizosphere	MTSIKIFKNADSQNLENDVNKFLKGHENYITSVSLMTFVKENYPHFLAFVTIQEKIPPVNVETANNS*
Ga0075417_100354713	3300006049	Populus Rhizosphere	MTSIKIFKNADSQNLENDVNKFLKGYENYITSVSLMTFIKDQLPTFLAVVTIQEKIPPVNVETSNTK*
Ga0082029_13812113	3300006169	Termite Nest	MTSIKIFKNHESQNLEKDVNKFLQGYENYITNVSLMTFIKDSEPTFLALVTILEEKIPPVNVETADNK*
Ga0074050_100340662	3300006577	Soil	MTSIKIFKNADSQNLENDVNKFLKGYENYITSVSLMTFIKDQLPTFLAVVTIQEKIPPVNVE
Ga0075428_1000761713	3300006844	Populus Rhizosphere	MTSIKIFKNHESQNLEKDVNKFLQGYENYITNVSLMTFIKDSEPIFLALVTILEEKIPSVNVETADNK*
Ga0111539_107404043	3300009094	Populus Rhizosphere	MTSIKIFKNHESQNLENDVNKFLEGYEDEDYITSVNLSTYIKDSAPIFYALVTIQKNIPPVNMEAPDTK*
Ga0114129_105080864	3300009147	Populus Rhizosphere	MTSIKIFKNHESQNLEKDVNKFLQGYENYITNVSLMTFIKDSEPIFLALVTILEEKIPPVNV*
Ga0075423_106513731	3300009162	Populus Rhizosphere	MTSIKIFKNHESQNLENDVNKFLEGYEDEDYITSVNLSTYIKDSAPIFYALVTILEEKVPPVNVETADNK*
Ga0105241_126180301	3300009174	Corn Rhizosphere	QSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIHSAKPETPDNN*
Ga0105249_101668072	3300009553	Switchgrass Rhizosphere	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYVKDQEPTFLALVTIQEKIHSVKPETPDNN*
Ga0134086_104104231	3300010323	Grasslands Soil	MTSIKIFKNHDSQNLEHDVNKFLQGYENYLTSVSLMTFIKDSSPIFLAVVTILEEKIPPVNVETADTN*
Ga0126370_117949371	3300010358	Tropical Forest Soil	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIQSVKVETSDNN*
Ga0126377_108824052	3300010362	Tropical Forest Soil	MTSIKIFKNHESQSLESDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIHPVKAETPDNN*
Ga0157356_10040041	3300012474	Unplanted Soil	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIHSVKPETPVNN*
Ga0157336_10290122	3300012477	Arabidopsis Rhizosphere	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIHPVKPETPDNN*
Ga0157320_10000772	3300012481	Arabidopsis Rhizosphere	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLAIVTIQEKIHSVKPETPVNN*
Ga0157323_10068351	3300012495	Arabidopsis Rhizosphere	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIHSVKPET
Ga0157347_10309412	3300012502	Arabidopsis Rhizosphere	MTSIKIFKNGESEKLENDVNKFLEGYENYMTSVSLMTFMKDSSPHFLAVVSILGKIPPVNVEAANNK*
Ga0157354_10347831	3300012517	Unplanted Soil	SLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIQSKVETSDNNQTIHKQMK*
Ga0126375_100457163	3300012948	Tropical Forest Soil	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIHPVKAETPDNN*
Ga0157376_124177331	3300014969	Miscanthus Rhizosphere	ESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIHSVKPETPDNN*
Ga0132258_116028741	3300015371	Arabidopsis Rhizosphere	MTSIKIFKNADSQNLENDVNKFLKGYENYITSVSLMTFIKDQLPTFLAVVTIQEKIPPVNVENC*
Ga0132258_133413993	3300015371	Arabidopsis Rhizosphere	MTSIKIFKNGESEKLENDVNKFLEGYENYMTSMSLMTFMKDSSPHFLAVVSILGKIPPVNVEAANNK*
Ga0132258_134895481	3300015371	Arabidopsis Rhizosphere	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIHSVKVETSDNN*
Ga0132258_138784862	3300015371	Arabidopsis Rhizosphere	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKI
Ga0132256_1007725502	3300015372	Arabidopsis Rhizosphere	MTSIKIFKNADSQNLENDVNKFLKGYENYITSVSLMTFIKDQLPTFLAVVTIQEKIPPVNVESSNTK*
Ga0132257_1037850642	3300015373	Arabidopsis Rhizosphere	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIQSVKAETSDNN*
Ga0132255_1052111021	3300015374	Arabidopsis Rhizosphere	YMTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIHPVKPETPDNN*
Ga0132255_1056665691	3300015374	Arabidopsis Rhizosphere	YMTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIHSVKPETPDNN*
Ga0184604_100211652	3300018000	Groundwater Sediment	MTSIKIFKNHDSQNLENDVNKFLKGYENYITSVSLMTFILDQRPTFLAVVSILEEKISPVNVETADNK
Ga0184605_100012046	3300018027	Groundwater Sediment	DSQNLENDVNKFLKGYENYITSVSLMTFILDQRPTFLAVVSILEEKISPVNVETADNK
Ga0184605_100032487	3300018027	Groundwater Sediment	MTSIKIFKNHDSQNLENDVNKFLKGYENYITSVSLMTFILDQRPTFLAVVTILEEKISPVNVETADNK
Ga0184605_100396031	3300018027	Groundwater Sediment	DSQNLENDVNKFLKGYENYITSVSLMTFILDQRPTFLAVVSVLEEKISPVNVETADNK
Ga0184608_1000055015	3300018028	Groundwater Sediment	MTSIKIFKNHDSQNLENDVNKFLKGYENYITSVSLMTFILDQRPTFLAVVSVLEEKISPVNVETADNK
Ga0184634_103778752	3300018031	Groundwater Sediment	MTSIKIIKNIDSQNLENDVNKFLKGHENYITSVSLMSFVKDSIPHFLAFVTLQEKIPPVNVETANNK
Ga0184611_10379381	3300018067	Groundwater Sediment	MTSIKIIKNLDSQNLENDVNKFLKGHENYITSVSLMSFVKDSIPHFLAFVTLQEKIPPVNVETANNK
Ga0184635_101213181	3300018072	Groundwater Sediment	DSQNLENDVNKFLKGYENYITSVSLMTFILDQRPTFLAVVSVLEEKISTVNVETADNK
Ga0184640_100712921	3300018074	Groundwater Sediment	NLENDVNKFLKGYENYITSVSLMTFILDQRPTFLAVVSVLEEKISPVNVETADNK
Ga0184625_100042396	3300018081	Groundwater Sediment	MTSIKIFKNHDSHNLENDVNKFLKGYENYITSVSLMTFILDQRPTFLAVVTILEEKISPVNVETADNK
Ga0184625_103598101	3300018081	Groundwater Sediment	MTSIKIFKNADSQNLENDVNKFLKGHENYITSVSLGNFIKNESLTFLAVVTIQEKTPPINVETADTK
Ga0184642_15267661	3300019279	Groundwater Sediment	QNLENDVNKFLKGYENYITSVSLMTFILDQRPTFLAVVSILEEKISPVNVETADNK
Ga0193720_10625952	3300019868	Soil	FKNHDSQNLENDVNKFLKGYENYITSVSLMTFILDQRPTFLAVVSVLEEKISPVNVETADNK
Ga0222624_12847761	3300021951	Groundwater Sediment	KNHDSQNLENDVNKFLKGYENYITSVSLMTFILDQRPTFLAVVSILEEKISPVNVETADN
Ga0224452_11339912	3300022534	Groundwater Sediment	MTSIKIIKNLDSQNLENDVNKFLKGHENYITSVSLQTFVKDSIPHFLAFVTLQEKIPPVNVETANNK
Ga0222623_100258331	3300022694	Groundwater Sediment	QNLENDVNKFLKGYENYITSVSLMTFILDQRPTFLAVVSVLEEKISPVNVETADNK
Ga0222622_100020156	3300022756	Groundwater Sediment	HDSQNLENDVNKFLKGYENYITSVSLMTFILDQRPTFLAVVSILEEKISPVNVETADNK
Ga0207673_10679091	3300025290	Corn, Switchgrass And Miscanthus Rhizosphere	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIHSVKPETPDNN
Ga0207697_101137081	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	NHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIHSVKPETPDNN
Ga0207654_114256621	3300025911	Corn Rhizosphere	QSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIHSAKPETPDNN
Ga0207659_102437782	3300025926	Miscanthus Rhizosphere	YMTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIHSVKPETPDNN
Ga0207691_103725423	3300025940	Miscanthus Rhizosphere	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIQSKVETSDNNQTIHKQMK
Ga0209470_100427410	3300026324	Soil	MTSIKIFKNHDSQNLENDVNKFLQGYENYLTSVSLMTFIKDSSPIFLAVVTILEEKIPPVNVETADTK
Ga0209470_11032653	3300026324	Soil	MTSIKIFKNHASQNLENDVNKFLQGYENYITSVSLMTYIKDSLPIFVALVTILEEKIPPVNVETADTK
Ga0208709_1054142	3300026693	Soil	MTSIKIFKNHDSQNLENDVNKFLRGYENYITSVSLMTYIKDSLPIFVALVTILEEKIPPV
Ga0207483_1008441	3300026750	Soil	MTSIKIFKNHDSQNLENDVNKFLKGYENYITSVSLMTYIKDSLPIFVALVTILEEKIPPVNVESDSSS
Ga0207511_1069032	3300026802	Soil	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIHSVKPETPD
Ga0207479_1004332	3300026973	Soil	MTSIKIFKNHDSQNLENDVNNFLKGYENYITSVSLMTYIKDSLPIFVALVTILEEKIPPVNVETDSSS
Ga0208475_10261151	3300027018	Soil	MTSIKIFKNHDSQNLENDVNKFLKGYENYITSVSLMTYIKDSLPIFVALVTILEEKIPPVNVETDSSS
Ga0207449_1026621	3300027472	Soil	NADSQNLENDVNKFLKGYENYITSVSLMTFIKDQLPTFLAVVTIQEKIPPVKVETPNTK
Ga0208890_10926282	3300027523	Soil	KIFKNADSQNLENDVNKFLKGYENYITSVSLMTFIKDQLPTFLAVVTIQGKIPPVNVETADAK
Ga0207981_10029462	3300027560	Soil	MTSIKIFKNADSQNLENDVNKFLKGYENYITSVSLMTFIKDQLPTFLAVVTIQEKIPPVNVETANTK
Ga0209814_100090755	3300027873	Populus Rhizosphere	MTSIKIFKNADSQNLENDVNKFLKGYENYITSVSLMTFIKDQLPTFLAVVTIQEKIPPVNVETSNTK
Ga0209481_100271504	3300027880	Populus Rhizosphere	MTSIKIFKNHESQNLEKDVNKFLQGYENYITNVSLMTFIKDSEPIFLALVTILEEKIPSVNVETADNK
Ga0209481_102344881	3300027880	Populus Rhizosphere	TSIKIFKNHDSRNLENDVNKFLQGYENYITSVSLMTYIKDSLPIFVALVTILEEKIPPVNVETANNK
Ga0307318_101098681	3300028744	Soil	MTSIKIFKNHDSQNLENDVNKFLKGYENYITSASLMTFILDQRPTFLAVVTILEEKISPVNVETADNK
Ga0307287_101443771	3300028796	Soil	MTSIKIFKNHDSHNLENDVNKFLKGYENYITSVSLMTFILDQRPTFLAVVSVLEEKISPVNVETADNK
Ga0307302_105172091	3300028814	Soil	MTSIKIFKNHDSQNLENDVNKFLKGYENYITSVSLMTFILDQRPTFLAVVSVLEEKIS
Ga0307278_100858001	3300028878	Soil	LENDVNKFLKGYENYITSVSLMTFILDQRPTFLAVVSILEEKISPVNVETADNK
Ga0310813_101019651	3300031716	Soil	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYVKDQEPTFLALVTIQEKIHSVKPETSDNN
Ga0310893_102908032	3300031892	Soil	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEKIHSVKPETP
Ga0307472_1005654853	3300032205	Hardwood Forest Soil	MTSIKIFKNADSQNLENDVNKFLKGYENYITNVSLMTFIKDQLPTFLAVVTIQEKIPPVNVQTANTK
Ga0373959_0120258_3_167	3300034820	Rhizosphere Soil	MTSIKIFKNHESQSLENDVNKFLGGYENYLTSVSLMTYIKDQEPTFLALVTIQEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099830

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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