Metagenome / Metatranscriptome Family F099810

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099810
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	89 residues
Representative Sequence	MIRQVDKSRFNIPMSGHPKLHRELMWYATEDDAVLGVVVLDLVDKDYSWAVLTENDQGPGYTAIDGRISLPTEEDATAALHDAMRSISGKS
Number of Associated Samples	64
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.52 %
% of genes near scaffold ends (potentially truncated)	28.16 %
% of genes from short scaffolds (< 2000 bps)	98.06 %
Associated GOLD sequencing projects	53
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.78

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.408 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.272 % of family members)
Environment Ontology (ENVO)	Unclassified (36.893 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (61.165 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.45% β-sheet: 35.29% Coil/Unstructured: 51.26%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.78
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.78
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.296.1.2: PF0168-like	d1yb3a1	1yb3	0.62581
b.60.1.0: automated matches	d4ge1a_	4ge1	0.62361
d.36.1.0: automated matches	d4doia_	4doi	0.62253
f.6.1.1: Leukocidin (pore-forming toxin)	d6u2sa_	6u2s	0.60901
f.69.1.1: Perfringolysin N-terminal-like	d6nala1	6nal	0.59944

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF14534	DUF4440	3.88
PF14384	BrnA_antitoxin	1.94
PF04365	BrnT_toxin	0.97
PF08681	DUF1778	0.97
PF13463	HTH_27	0.97
PF00171	Aldedh	0.97
PF08388	GIIM	0.97
PF07589	PEP-CTERM	0.97
PF00078	RVT_1	0.97
PF00012	HSP70	0.97
PF13560	HTH_31	0.97
PF07366	SnoaL	0.97
PF00536	SAM_1	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.97
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.97
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	0.97
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.97
COG4453	Uncharacterized conserved protein, DUF1778 family	Function unknown [S]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.41 %
Unclassified	root	N/A	13.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.41 %
Unclassified	root	N/A	13.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.41 %
Unclassified	root	N/A	13.59 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	77.67 %
Unclassified	root	N/A	13.59 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	67.96 %
Unclassified	root	N/A	13.59 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	55.34 %
Unclassified	root	N/A	13.59 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.97 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.97 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	54.37 %
Unclassified	root	N/A	13.59 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.97 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.97 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	54.37 %
Unclassified	root	N/A	13.59 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	0.97 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.97 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	48.54 %
Unclassified	root	N/A	13.59 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.97 %
Pseudomonas syringae group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group	0.97 %
Sphingobium xenophagum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium xenophagum	0.97 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	48.54 %
Unclassified	root	N/A	13.59 %
Bradyrhizobium sp. dw_78	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. dw_78	0.97 %
Pseudomonas syringae group genomosp. 1	species subgroup	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1	0.97 %
Sphingobium xenophagum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium xenophagum	0.97 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	48.54 %
Unclassified	root	N/A	13.59 %
Pseudomonas syringae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	0.97 %
Bradyrhizobium sp. dw_78	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. dw_78	0.97 %
Sphingobium xenophagum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium xenophagum	0.97 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig109628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	541	Open in IMG/M
2170459010\|GIO7OMY01D9XEA	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. dw_78	511	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105120736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	701	Open in IMG/M
3300000955\|JGI1027J12803_100534997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	763	Open in IMG/M
3300000955\|JGI1027J12803_102074143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	919	Open in IMG/M
3300005347\|Ga0070668_100387344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1191	Open in IMG/M
3300005347\|Ga0070668_100717009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	883	Open in IMG/M
3300005434\|Ga0070709_10297063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1179	Open in IMG/M
3300005434\|Ga0070709_10740134	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300005436\|Ga0070713_102356927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium xenophagum	515	Open in IMG/M
3300005437\|Ga0070710_10522719	All Organisms → cellular organisms → Bacteria → Proteobacteria	816	Open in IMG/M
3300005439\|Ga0070711_100122927	All Organisms → cellular organisms → Bacteria	1922	Open in IMG/M
3300005439\|Ga0070711_100211138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1503	Open in IMG/M
3300005439\|Ga0070711_100400812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1114	Open in IMG/M
3300005439\|Ga0070711_100641615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	889	Open in IMG/M
3300005441\|Ga0070700_101544323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	566	Open in IMG/M
3300005441\|Ga0070700_101574206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	561	Open in IMG/M
3300005456\|Ga0070678_100887122	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300005539\|Ga0068853_102160863	All Organisms → cellular organisms → Bacteria → Proteobacteria	540	Open in IMG/M
3300005539\|Ga0068853_102236636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	530	Open in IMG/M
3300005718\|Ga0068866_10467105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	828	Open in IMG/M
3300005719\|Ga0068861_100743356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	915	Open in IMG/M
3300005719\|Ga0068861_102617209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509	Open in IMG/M
3300005841\|Ga0068863_100483094	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300005843\|Ga0068860_100898602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	902	Open in IMG/M
3300006172\|Ga0075018_10317498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	773	Open in IMG/M
3300006172\|Ga0075018_10398783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	699	Open in IMG/M
3300006173\|Ga0070716_100434677	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300006175\|Ga0070712_100312273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1276	Open in IMG/M
3300006175\|Ga0070712_100665439	Not Available	886	Open in IMG/M
3300006175\|Ga0070712_100736855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	843	Open in IMG/M
3300006175\|Ga0070712_100888978	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300006175\|Ga0070712_101580563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	573	Open in IMG/M
3300006237\|Ga0097621_101819756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	581	Open in IMG/M
3300006881\|Ga0068865_100482271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1031	Open in IMG/M
3300009156\|Ga0111538_12861337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	604	Open in IMG/M
3300009176\|Ga0105242_11247275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	765	Open in IMG/M
3300009177\|Ga0105248_11951553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	666	Open in IMG/M
3300009553\|Ga0105249_12365448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	604	Open in IMG/M
3300009553\|Ga0105249_13235693	Not Available	524	Open in IMG/M
3300010373\|Ga0134128_11225396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	828	Open in IMG/M
3300010375\|Ga0105239_13274630	Not Available	527	Open in IMG/M
3300010400\|Ga0134122_10388639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1228	Open in IMG/M
3300010401\|Ga0134121_11231805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	750	Open in IMG/M
3300012469\|Ga0150984_101212889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	718	Open in IMG/M
3300012951\|Ga0164300_11031621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	532	Open in IMG/M
3300012955\|Ga0164298_10443420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	852	Open in IMG/M
3300012957\|Ga0164303_10451869	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300012957\|Ga0164303_10454445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	807	Open in IMG/M
3300012957\|Ga0164303_10479686	All Organisms → cellular organisms → Bacteria → Proteobacteria	790	Open in IMG/M
3300012958\|Ga0164299_10090536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1562	Open in IMG/M
3300012958\|Ga0164299_10254542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1052	Open in IMG/M
3300012960\|Ga0164301_10186355	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300012960\|Ga0164301_10747561	Not Available	742	Open in IMG/M
3300012960\|Ga0164301_10954959	Not Available	670	Open in IMG/M
3300012960\|Ga0164301_11267249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	596	Open in IMG/M
3300012961\|Ga0164302_10157116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1347	Open in IMG/M
3300012961\|Ga0164302_11119813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	623	Open in IMG/M
3300012984\|Ga0164309_11441060	Not Available	588	Open in IMG/M
3300012984\|Ga0164309_11676286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	545	Open in IMG/M
3300012984\|Ga0164309_11813903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	523	Open in IMG/M
3300012985\|Ga0164308_10177351	Not Available	1602	Open in IMG/M
3300012986\|Ga0164304_10718696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	761	Open in IMG/M
3300012986\|Ga0164304_11299856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	592	Open in IMG/M
3300012988\|Ga0164306_10622692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	848	Open in IMG/M
3300012988\|Ga0164306_10782406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	766	Open in IMG/M
3300012989\|Ga0164305_10139377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1628	Open in IMG/M
3300012989\|Ga0164305_10196597	Not Available	1414	Open in IMG/M
3300012989\|Ga0164305_10639394	All Organisms → cellular organisms → Bacteria → Proteobacteria	861	Open in IMG/M
3300013306\|Ga0163162_10793720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1064	Open in IMG/M
3300015371\|Ga0132258_10745691	All Organisms → cellular organisms → Bacteria	2467	Open in IMG/M
3300015371\|Ga0132258_11602072	All Organisms → cellular organisms → Bacteria → Proteobacteria	1643	Open in IMG/M
3300015373\|Ga0132257_101473231	All Organisms → cellular organisms → Bacteria → Proteobacteria	868	Open in IMG/M
3300015374\|Ga0132255_105455996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	538	Open in IMG/M
3300017792\|Ga0163161_10201150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1535	Open in IMG/M
3300017792\|Ga0163161_11325502	Not Available	626	Open in IMG/M
3300017792\|Ga0163161_11862154	Not Available	535	Open in IMG/M
3300017792\|Ga0163161_12032396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	511	Open in IMG/M
3300020199\|Ga0179592_10468317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	543	Open in IMG/M
3300020579\|Ga0210407_11477103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	502	Open in IMG/M
3300021478\|Ga0210402_11422407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	621	Open in IMG/M
3300022726\|Ga0242654_10264173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	621	Open in IMG/M
3300025899\|Ga0207642_10019720	All Organisms → cellular organisms → Bacteria → Proteobacteria	2617	Open in IMG/M
3300025906\|Ga0207699_10490136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	886	Open in IMG/M
3300025906\|Ga0207699_10780232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	702	Open in IMG/M
3300025915\|Ga0207693_10365090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1130	Open in IMG/M
3300025915\|Ga0207693_10395333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1081	Open in IMG/M
3300025915\|Ga0207693_10505308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	943	Open in IMG/M
3300025916\|Ga0207663_11168718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	619	Open in IMG/M
3300025916\|Ga0207663_11317960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	581	Open in IMG/M
3300025931\|Ga0207644_10514544	Not Available	988	Open in IMG/M
3300025931\|Ga0207644_10929724	All Organisms → cellular organisms → Bacteria → Proteobacteria	729	Open in IMG/M
3300025934\|Ga0207686_10228849	All Organisms → cellular organisms → Bacteria → Proteobacteria	1347	Open in IMG/M
3300025972\|Ga0207668_10191913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1620	Open in IMG/M
3300025972\|Ga0207668_11628411	Not Available	583	Open in IMG/M
3300026023\|Ga0207677_10757628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	866	Open in IMG/M
3300026041\|Ga0207639_11176461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	720	Open in IMG/M
3300026041\|Ga0207639_12062587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	531	Open in IMG/M
3300026118\|Ga0207675_101070667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	826	Open in IMG/M
3300026121\|Ga0207683_10385415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1289	Open in IMG/M
3300031198\|Ga0307500_10148196	Not Available	668	Open in IMG/M
3300031740\|Ga0307468_101577622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	612	Open in IMG/M
3300031744\|Ga0306918_11366538	Not Available	544	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	61.17%
Host-Associated	Host-Associated	37.86%
Engineered	Engineered	0.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.22%
Plants	Host-Associated → Plants	37.86%
Aquatic	Environmental → Aquatic	1.94%
Modeled	Engineered → Modeled	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.22%
Rhizoplane	Host-Associated → Plants → Rhizoplane	23.30%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.59%
Sediment	Environmental → Aquatic → Sediment	1.94%
Roots	Host-Associated → Plants → Roots	0.97%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.89%
Loam	Environmental → Terrestrial → Soil → Loam	22.33%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.94%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.97%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.16%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	22.33%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.97%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	24.27%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	22.33%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.97%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.97%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0627.00007150	2166559005	Simulated	MIRQVEKSRYNIPTSATLHRELAWYATEDDAVLGVVILDMAYKDYSWAALTQGDQATGYMTVDVGQSLPTEEDATAALHDAMRLVH
F62_08861230	2170459010	Grass Soil	MIRRVVDKSRYNIPVSGDPRLHDLTWYVTEDDAVLGVVLVDLVDMGYSWIALTQSDQAPGYTAADMGSSLPTEDDA
INPhiseqgaiiFebDRAFT_1051207361	3300000364	Soil	MIHMVDKSRYNIPMSGDPRLHXELXWXATXDXAXLGVVILDLVDKDYSWVVLTENDQELGFTAIDIGTSLPTEDDARAMLHDAMRKCQRTSGAGPVTALT*
JGI1027J12803_1005349972	3300000955	Soil	MIRQVDKSRFNIPMSGYPKLHREVMWYATEDNAVLGVVILDLVDKDYSWAVLTENDQGPGYTAIDMGAMLPTEEDATAALHDAMRLARG*
JGI1027J12803_1020741432	3300000955	Soil	MIHMVDKSRYNIPMSGDPRLHHELMWYATDDDAVLGVVILDLVDKDYSWVVLTENDQELGFTAIDIGTSLPTEDDARAMLHDAMRKCQRTSGAGPVTALT*
Ga0070668_1003873444	3300005347	Switchgrass Rhizosphere	MIRQVDKSHYHIPTSGNPMLHRELTWYATGDDAVLGVVILDVIDKDYSWVALTQSDRGAGYTAADIGETLPTEEDATAALHDAMRSINGSHK*
Ga0070668_1007170093	3300005347	Switchgrass Rhizosphere	MIRQVVDKSRYNIPVSDDPRLHELTWYATEDDAVLGVVILDLVDLGYSWIALTQSDQPPGYTAANMGSSLPTEDDATTALHDAMRSIRGT*
Ga0070709_102970631	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MIRQVDKSRFNIPMSSHPDRHRELMWYATEDDAVLGVVILDLVDKDYSWAALTQSDQAAGYTTADMGQSPLPTEEDA
Ga0070709_107401343	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VIRQVDKSRFNIPIPGNPMLHRELAWYATDDDAVLGVIILDLAYKDYSWAVLTQSDQAAGYTTADMGQSPLPTEEDATTALHDAMRSISGKS*
Ga0070713_1023569271	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MIRRVDKSRFNIPIPGNPMLHRELMWYATDDDAVLGVVILDLAYKHYSWAVLTQSDQAAGYTTADMGQSLPTEEDATAALHDAMRSACGNR*
Ga0070710_105227193	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MIRQVDKSRFNIPIPGYPKLHRELMWYATEDDAVLGVVVLDLVDKDYSWAVLTENDQGPGYTAIDGRISLPTEEDATAALHDAMRSISGKS*
Ga0070711_1001229272	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MIRRVDKSRFNIPIPGNPMLHRELMWYATDDDAVLGVVILDLAYKDYSWAVLTQSDQAAGYTTADMGQSLPTEEDATAALHDAMRSACGNR*
Ga0070711_1002111382	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MIRQVDKSRFNIPTSGHPKLHRELMWYATDDDAVLGVVILDLVDKDYSWVVLTQGPGFTAIDIGASLPSEDDATAVLHDAMRSISGKS*
Ga0070711_1004008123	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MIRQIDKSRFNIPLSGVLRRELAWYATADDTVLGVVLDLAEGYSWLLLTESDQGQGFAAIDSGGSLTEDDATAALHDAMRLAHGG*
Ga0070711_1006416152	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MIRQVDKSRFNIPMSSHPDRHRELMWYATEDDAVLGVVILDLVDKDYSWAALTQSDQAAGYTTADMGQSPLPTENDATAALHDAMRSISGKS*
Ga0070700_1015443232	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	NIPMSGYPKVHREVTWYATDDDAVLGVVILDLVDKDYSWAVLTENDQGPGYTAIDVGAMLPTEDDATAALHDAMRSISGKS*
Ga0070700_1015742061	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MIRQADKSRFNIPIPGNPMLHRELAWYATDDDAVIGVVILDLAYKDYSWAVLTQSDQAAGYTTADMGQSPLPTEDDATAALHEAMRSISGKS*
Ga0070678_1008871221	3300005456	Miscanthus Rhizosphere	MIRQVDKSRFNIPMSGYPELHRELMWYATEDDAVLGVVVLDLVDKDYSWVMLTENDQGPGYTAIDGRISLPTEEDATAALHDAMRS
Ga0068853_1021608632	3300005539	Corn Rhizosphere	MIRQVDKSRFNIPMSGHPKLHRELMWYATEDDAVLGVVVLDLVDKDYSWAVLTENDQGPGYTAIDGRISLPTEEDATAALHDAMRSISGKS*
Ga0068853_1022366362	3300005539	Corn Rhizosphere	GEMIRQADKSRFNIPIPGNPMLHRELAWYATDDDAVIGVVILDLAYKDYSWAALTQSDQAAGYTTADMGQSLPTEEDATAALHDAMRSACGNR*
Ga0068866_104671053	3300005718	Miscanthus Rhizosphere	MIRQVDKSRFNIPMSSHPDRHRELMWYATEDDAVLGVVILDLVDKDYSWAALTQSDQAAGYMTADMGQSPLPTEDDATAALHDAMRSISGKS*
Ga0068861_1007433561	3300005719	Switchgrass Rhizosphere	MIRQVDKSRFNIPMSGYPELHRELMWYATEDDAVLGVVVLDLVDKDYSWVMLTENDQGPGYTAIDGRISLPTEEDATAALHDAMRSISGKS*
Ga0068861_1026172092	3300005719	Switchgrass Rhizosphere	MIRQVDKSSFNIPIPGNPRLHRELAWYATDDDAVLGVIILDLAYKDYSWAVLTQSDQAAGYTTADMGQSPLPTEDDATAALHDAMRSISAKS*
Ga0068863_1004830943	3300005841	Switchgrass Rhizosphere	DKSRFNIPMSGYRKLHREVTWYATDDDAVLGVVILDLAYKDYSWAVLTQSDQAAGYTTADMGQSPLPTEDDATAALHDAMRSISGKS*
Ga0068860_1008986021	3300005843	Switchgrass Rhizosphere	MIRQVDKSRFNIPMSSHPDRHRELMWYATEDDAVLGVVILDLVDKDYSWAALTQSDQAAGYTTADMGQSPLPTEDDATAALHDAMRSISGKS*
Ga0075018_103174982	3300006172	Watersheds	MIRQVDKSSFNIPIPGNPMLHRELAWYATDDDAVIGVVILDLAYKDYSWAVLTQSDQAAGYTTADMGQSLATEDDATAALHDAMRSISGKS*
Ga0075018_103987831	3300006172	Watersheds	MIRQVEKSRYNIPTSATLHRELAWYATEDDAVLGVVILDMAYKDYSWAALTQGDQATGYMTVDVGQSLPTEEDATAALHDAMRLVHGR*
Ga0070716_1004346771	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MIRQVDKSRFNIPMSGYPELHRELMWYATEDDAVLGVVVLDLVDKDYSWVMLTENDQGPGYTAIDGRISLPTEEDATAALHDAMRSVSGES*
Ga0070712_1003122731	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VDKSRFNIPIPGNPMLHRELMWYATDDDAVLGVVILDLAYKDYSWAVLTQSDQAAGYTTADMGQSLPTEEDATAALHDAMRSACGNR*
Ga0070712_1006654392	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MIRQIDKSRFNIPLSGVLRRELAWYATADDATADDTVLGVVLDLDEGYSWLVLTESDKGQGFAAIDTGGSITEDDATAALHDAMRLAHGG*
Ga0070712_1007368552	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MIRQIDKSRFNIPMSSHPDRHRELMWYATEDDAVLGVVILDLVDKDYSWAALTQSDQAAGYMTADMGQSPLPTEDDATAALHDAM
Ga0070712_1008889783	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VIRQVDKSRFNIPIPGNPMLHRELAWYATDDDAVLGVIILDLAYKDYSWAVLTQSDQAAGYTTADMGQSPLPTEED
Ga0070712_1015805632	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MIRQVDKSRFHIPMSGHPELHRELMWYATDDDAVLGVVILDLVDKDYSWVVLTQGPGFTAIDIGASLPTEDDAT
Ga0097621_1018197562	3300006237	Miscanthus Rhizosphere	MIRQVDKSRFHIPMSGHPELHRELMWYATDDDAVLGVVILDLVDKDYSWAALTQSDQAAGYTTADMGQSPLPTEDDATAALHDAMRSIRGKS*
Ga0068865_1004822711	3300006881	Miscanthus Rhizosphere	MIRQVDKSRFNIPMSGYPELHRELMWYATEDDAVLGVVVLDLVDKDYSWVMLTENDQGPGYTAIDGRISLPTEEDATAALHD
Ga0111538_128613371	3300009156	Populus Rhizosphere	VIRQVDKSRFNIPMSGYPELHRELMWYATDDDAVLGVVVLDLVDKDYSWVMLTENDQGPGYTAIDGRISLATEEDATAGLHDAMRSAQGGR*
Ga0105242_112472751	3300009176	Miscanthus Rhizosphere	YSTGAGVLYVSLTSRGFRVPSRFNIPMSGYPELHRELMWYATEDDAVLGVVVLDLVDKDYSWVVLTENDQGPGFSAIDLGTSLPSEDDATAALHDAMRSISAKS*
Ga0105248_119515531	3300009177	Switchgrass Rhizosphere	MIRQVDKSRFNIPMSGYPELHRELMWYATEDDAVLGVVVLDLVDKDYSWVVLTENDQGPGYTAIDLGTSLPSEDDATAALHDAMRSISGKS*
Ga0105249_123654481	3300009553	Switchgrass Rhizosphere	MIRQVVDKSRYNIPVSDDPRLHELTWYATEDDAVLGVVILDLVDLGYSWIALTQSDQPPGYTAATMGSSLPTEDDATTALHDAMRSIRGT*
Ga0105249_132356932	3300009553	Switchgrass Rhizosphere	MIRQIDKSRFNIPLSGVLRPEIAWYATADDTVLGVVLDLDEGYSWLVLTESDQGQGFAAIDTGGSLTEEDATAALHDAMRLAHDG*
Ga0134128_112253962	3300010373	Terrestrial Soil	MIRKVDKSRFNIPMSSHPDRHRELMWYATEDDAVLGVVILDLVDKDYSWAALTQSDQAAGYTTADMGQSPLPTEEDATAALHDAMRSISGKS*
Ga0105239_132746301	3300010375	Corn Rhizosphere	MIRQVDKSHYNIPAAGDPKLHRELIWYATEDDAVLGVVILDLVDKDYSWVVLTQGPGFTAIDIGASLPTEDDATAALHDAMRSISGKS*
Ga0134122_103886391	3300010400	Terrestrial Soil	MIRQVDKSRFNIPTSGHPKLHPELMWYASEDDAVLGVVVLDLVDKDYSWVMLTENDQGPGYTAIDGRISLPTEEDATAALHDAMRSVRSVSGES*
Ga0134121_112318053	3300010401	Terrestrial Soil	VIRQVDKSRFNIPIPGNPMLHRELMWYATDDDAVLGVVILDLAYKDYSWAVLTQSDQAAGYTTADMGQSPLPTEDEATAALHDAMRSISGKS*
Ga0150984_1012128892	3300012469	Avena Fatua Rhizosphere	MIRQVDKSSFNIPIPGNPMLHRELAWYATDDDAVLGVIILDLAYKDYSWAVLTQSDQAPGYTTADMGQSLATEEDATATLHDAMRSIHGS*
Ga0164300_110316211	3300012951	Soil	MIRQVDKPRFNIPMSGYPKLHRELMWYATEDDAVLGVVILDLAYKDYSWAVLTQSDQAAGYTTADMGQSPLPTEEDATAALHDAMRSISGKS*
Ga0164298_104434201	3300012955	Soil	MIRQVDKSRFNIPIPGNPRLHRELMWYATDDDAVLGVIILDLVDKDYSWVVLTQGPGFTAIDIGASLPTEDDATAALHDAMRSISGKS*
Ga0164303_104518691	3300012957	Soil	MIRQIDKSRFNIPMSSHPDRHRELMWYATEDDTVLGVVILVLIEKNYSWVMLTENDRGPGYTASVIGASHLSEDDATAALHDAMRSVHGR*
Ga0164303_104544452	3300012957	Soil	MIRQVDKSKYHIPKSGDPRCHRELAWYATDDAAVIGAVILDLIDRDFSWVVLTQNDQGPGYTAIDMGHSRPTADEATATLHDVMRSVSGK*
Ga0164303_104796862	3300012957	Soil	MIRQVDKTRFNIPMSGHPELHRELMWYATDDDTVLGVVVLDLVDKDYSWVMLTENDQGPGYTAIDGSISLPTEEDATAALHDAMRSVSGES*
Ga0164299_100905362	3300012958	Soil	MSGHPELHRELLWYATDDDAVLGVVILDLVDKDYSWVVLTENDQDPGFTAIDIGASLLSEDDATAALHDAMRSISGKS*
Ga0164299_102545421	3300012958	Soil	VIRQVDKSRFNIPIPGNPMLHRELAWYATEDDAVLGVIILDLAYKDYSWAVLTQSDQAAGYTTADMGQSPLPTEEDATAALHDAM
Ga0164301_101863553	3300012960	Soil	MIRQIDKARFHIPMTGHPMLHRELSWYASEDDAVLGVVVLDLVDKDYSWVVLTENDQGPGFSAIDLGTSLPSEDDATAALHDAMRSISGKS*
Ga0164301_107475612	3300012960	Soil	NPMLHRELAWYATDRDAVIGVVILDLAYKDCSWAVLTQSGQAAGYTATDIGTSLPTEDDAIAMLHDAMRKCQRASGAGPVTALT*
Ga0164301_109549592	3300012960	Soil	MIRQIDKARFNIPLSGVLRRELTWYATADDTVLGVVLDLDEGYSWLVLTESDKGQGFAAIDTGGSITEDDATAALHDAMRLAHGG*
Ga0164301_112672492	3300012960	Soil	MIRQVDKSKYHIPKSGDPRCHRELAWYATDDDAVIGAVILDLIDRDFSWVVLTQNDQGPGYTAIDMGHSRPTADEATATLHDVMRSVSGK*
Ga0164302_101571161	3300012961	Soil	KSRYNIPTSATLHRELAWYATEDDAVLGVVILDMAYKDYSWAALTQGDQATGYMTVDVGQSLPTEEDATAALHDAMRLVHGR*
Ga0164302_111198131	3300012961	Soil	MIRQVDKSSFNIPIPGNPMLHRELAWYATDDDAVIGVVILDLAYKDYSWAVLTQSDQAAGYTTADMGVSLPTEDDATAALHDAMRSVRG*
Ga0164309_114410602	3300012984	Soil	MIRQIDKARFNIPLSGVLRRELAWYATADDTVLGVVLDLDEGYSWLVLTESDQGQGFAAIDTGGSLTEEDATAALHDAMRLAHG
Ga0164309_116762863	3300012984	Soil	MIRQVDKSRFNIPMSGYPKVHREVTWYATDDDAVLGVVILDLVDKDYSWAVLTENDQGPGYTAIDMGAMLPTEDDATAALHDAMRLARGE*
Ga0164309_118139032	3300012984	Soil	MIRQVDKSHYNIPIPGNPMLHRELAWYATDDDAVIGVVILDLAYKDYSWAVLTPSDQAAGYTTADMGQSLPTEEDATAALHDAMRLARG
Ga0164308_101773511	3300012985	Soil	MIRQIDKARFNIPLSGVLRRELTWYATADDTVLGVVLDLDEGYSWLVLTESDQGQGFAAIDSGGSLTVEDATAALHDAMRLARGQ*
Ga0164304_107186962	3300012986	Soil	MIRQVDKSHYNIPIPGNPMLHRELAWYATDDDAVIGVVILDLAYKDYSWAMLTQSDQAAGYTTADMGQSPLPTEEDATAALHDAMRSISGKS*
Ga0164304_112998563	3300012986	Soil	MIRQVEKSRYNIPTSATLHRELAWYATEDDAVLGVVILDMAYKDYSWAALTQGDQATGYMTVDVGQSLPTEEDATAALHDAM
Ga0164306_106226921	3300012988	Soil	MIRQVDKSRFHIPMSGHPELHRELMWYATDDDAVLGVVILDLVDKDYSWVVLTQGPGFTAIDIGASLPSEDDATAALHDAMRSVRG*
Ga0164306_107824061	3300012988	Soil	MIRQVDKSRFNIPMSGYPKVHREVTWYATDDDAVLGVVILDLVDKDYSWAVLTQSDQAAGYTTADVGQSLPTEEDATAALHDAMRLARGNR*
Ga0164305_101393771	3300012989	Soil	MMRQVDKSRYNIPTSATLHRELAWYATEDDAVLGVVILDMAYKDYSWAALTQGDQATGYMTVDVGQSLPTEEDATAALHDAMRLVHGR*
Ga0164305_101965971	3300012989	Soil	PMSGHPKHHRELMWYASEDDAVLGVVILDLVDKDYSWVVLTQGPGFTAIDIGASLPSEDDATAALHDAMRSISGKSEPPAKQNCAA*
Ga0164305_106393943	3300012989	Soil	MIRQVDKSKYHIPKSGDPRCHRELAWYATDDDAVIGSVILDLIDRDFSWVVLTRNDQGPGYTAIDMGHSRPTADEATATLHDVMRSVSGK*
Ga0163162_107937203	3300013306	Switchgrass Rhizosphere	MIRQADKSRFNIPIPGNPMLHRELAWYATDDDAVIGVVILDLAYKDYSWAALTQSDQAAGYTTADMGQSPLPTEDDATAALHDAMRSISGKS*
Ga0132258_107456912	3300015371	Arabidopsis Rhizosphere	MIRQVDKSRFNIPLSGYPLLHRELTWYATEDDAVLGVVILDLIDKDYSWVVLTESIKDAGFAAIDAGVSLATEEDATAALHDAMRLAHGPYQRGQR*
Ga0132258_116020724	3300015371	Arabidopsis Rhizosphere	MIRQVDKSRFNIPMCGHPELHRELMWYATDDDTVLGVVIFDLVDKDYSWTVLTENDQGPGYTAIDGRISLPTEEDATAALHDAMRLARG*
Ga0132257_1014732312	3300015373	Arabidopsis Rhizosphere	VIRQVDKSRFNIPMSGYPELHRELMWYATDDDAVLGVVVLDLVDKDYSWVMLTENDQGPGYTAIDGRISVPTEEDATAALHDAMRSISGKS*
Ga0132255_1054559961	3300015374	Arabidopsis Rhizosphere	VIRQVDKSRFNIPMSGYPELHRELMWYATDDDAVLGVVVLDLVDKDYSWVMLTENDQGPGYTAIDGRISLPTEEDATAGLHDAMRLARSSR*
Ga0163161_102011502	3300017792	Switchgrass Rhizosphere	MIRQVDKSRMWYATDDDAVLGVVILDLVDKDYSWAVLTENDQGPGYTAIDVGAMLPTEDDATAALHDAMRSISGKS
Ga0163161_113255021	3300017792	Switchgrass Rhizosphere	MIRQVDKSHYNIPMSGDPRLHHELMWYATDDDAVLGVVILDLVDKDYSWVVLTQSDRPLGYTAADMDQSLATEEDATAALHDAMRSVHGR
Ga0163161_118621542	3300017792	Switchgrass Rhizosphere	MIRQIDKSRFNIPLSGVLRHELAWYATADDTVLGVVLDLDEGYSWLVLTESDQGQGFAAIDTGGSLTEEDATAALHDAMRLAHGPDPGR
Ga0163161_120323962	3300017792	Switchgrass Rhizosphere	MIRQVDKSHFNIPMSGYPELHRELMWYATEDDAVLGVVVLDLVDKDYSWAVLTENDQGPGFTAIDMGASLPREDDATAALHDAMRSIRGKS
Ga0179592_104683171	3300020199	Vadose Zone Soil	MIRQVDKSRFNIPMSGHPKLHRESMWYATDDDAVLGVVILDLVDKDYFWVVLTENDQGPGFTAIHMGASLPTEDDATAALHDAMRSISGKS
Ga0210407_114771031	3300020579	Soil	MIRQVDKSRFNIPIPGNPMLHRELAWYATEDDAVLGVVILDMAYKDYSWAALTQGDQATGYMTVDVGQSLPTEEDATAALHDAMRLVHGR
Ga0210402_114224072	3300021478	Soil	MIRQVEKSRYNIPTSATLHRELAWYATEDDAVLGVVILDMAYKDYSWAALTQGDQATGYMTVDVGQSLPTEEDATAALHDAMRLVHGR
Ga0242654_102641733	3300022726	Soil	MIRQVDKSRFNIPTSGHPKLHRESTWYATDDDAVLGVVILDLVDKDYSWLVPTENDQEPGYTAIDMGASLPTEDDATAALH
Ga0207642_100197202	3300025899	Miscanthus Rhizosphere	MIRQVDKSRFNIPMSSHPDRHRELMWYATEDDAVLGVVILDLVDKDYSWAALTQSDQAAGYMTADMGQSPLPTEDDATAALHDAMRSISGKS
Ga0207699_104901363	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VIRQVDKSRFNIPIPGNPMLHRELAWYATDDDAVIGVVILDLAYKDYSWAVLTQSDQAAGYTTADMGQSPLPTEEDATTALHDAMRSISGKS
Ga0207699_107802321	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	GHPELHRELMWYASDDDAVLGVVVLDLVDKDYSWVVLTENDQGPGFSAIDLGTSLPSEDDATAALHDAMRSVRG
Ga0207693_103650901	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MIRQVDKSRFHIPMSGHPELHRELMWYATDDDAVLGVVILDLVDKDYSWVVLTQGPGFTAIDIGASLPSEDDATAALHDAMRSISGKS
Ga0207693_103953331	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MIRQVDKSRFNIPMSGYPELHRELMWYATEDDAVLGVVVLDLVDKDYSWVMLTENDQGPGYTAIDGRISLPTEEDATAALHDAMRSVSGES
Ga0207693_105053081	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MIRQIDKSRFNIPMSSHPDRHRELMWYATEDDAVLGVVILDLVDKDYSWAALTQSDQAAGYTTADMGQSPLPTEDDATAALHDAMRSISGKS
Ga0207663_111687182	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MIRQVDKSRFNIPTSGHPKLHRELMWYATDDDAVLGVVILDLVDKDYSWAVLTENDQGPGFTAIDMGAMLPTEDDATAALHDAMRSISGKS
Ga0207663_113179601	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	EMIRQVEKSRYNIPTSATLHRELAWYATEDDAVLGVVILDMAYKDYSWAALTQGDQATGYMTVDVGQSLPTEEDATAALHDAMRLVHGR
Ga0207644_105145443	3300025931	Switchgrass Rhizosphere	DKSHYNIPAAGDPKLHRELIWYATEDDAVLGVVLLDLVDKDYSWVVLTPSDRPPGYTAADMDQSLATEEEATAALHDAMRSVHGR
Ga0207644_109297241	3300025931	Switchgrass Rhizosphere	MIRQVDKSRFNIPMCGHPELHRELMWYATDDDTVLGVVIFDLVDKDYSWTVLTENDQGPGYTAIDGRISLPTEEDATAALHDAMRLVRGR
Ga0207686_102288493	3300025934	Miscanthus Rhizosphere	MIRQVDKSRFNIPMSSHPDRHRELMWYATEDDAVLGVVILDLVDKDYSWAALTQSDQAAGYTTADMGQSLPTEEDATAALHDAMRSACGNR
Ga0207668_101919132	3300025972	Switchgrass Rhizosphere	MIRQVDKSRFNIPMSGYPKVHREVTWYATDDDAVLGVVILDLVDKDYSWAVLTENDQGPGYTAIDVGAMLPTEDDATAALHDAMRSISGKS
Ga0207668_116284112	3300025972	Switchgrass Rhizosphere	MIRQIDKARFNIPLSGVLRRELTWYATADDTVLGVVLDLDEGYSWLVLTESDQGQGFAAIDSGGSLTVEDATAALHDAMRLARGQ
Ga0207677_107576282	3300026023	Miscanthus Rhizosphere	MIRQVDKSRFNIPMSSHPDRHRELMWYATEDDAVLGVVILDLVDKDYSWAALTQSDQAAGYTTADMGQSPLPTEDDATAALHD
Ga0207639_111764611	3300026041	Corn Rhizosphere	MIRQVDKSRFNIPMSGHPKLHRELMWYATEDDAVLGVVVLDLVDKDYSWAVLTENDQGPGYTAIDGRISLPTEEDATAALHDAMRSVSGES
Ga0207639_120625871	3300026041	Corn Rhizosphere	MIRQADKSRFNIPIPGNPMLHRELAWYATDDDAVIGVVILDLAYKDYSWAALTQSDQAAGYTTADMGQSLPTEEDATAALHDAMRSACGNR
Ga0207675_1010706671	3300026118	Switchgrass Rhizosphere	MIRQVDKSRFNIPMSGYPELHRELMWYATEDDAVLGVVVLDLVDKDYSWVMLTENDQGPGYTAIDGRISLPTEEDATAALHDAMRLARG
Ga0207683_103854151	3300026121	Miscanthus Rhizosphere	MIRQVDKSRFNIPMSGYPELHRELMWYATEDDAVLGVVVLDLVDKDYSWVMLTENDQGPGYTAIDGRISLPTEEDATAALHDAMRSISGKS
Ga0307500_101481962	3300031198	Soil	MIRQVDKSHYNIPIPNNPMLHRELAWYATDGDAVIGVVILDLAYKDYSWAVLTQSGQAAGYTATDMGQSLLTEEDATAALHDAMRSVHGR
Ga0307468_1015776221	3300031740	Hardwood Forest Soil	NIPVSDDPRLHELTWYATEDDAVLGVVILDLVDLGYSWIALTQSDQPPGYTAANMGSSLPTEDDATTALHDAMRSIRGT
Ga0306918_113665382	3300031744	Soil	MILRIDKSRFNIPASGQAELHRELAWYATDDDTVLGVVLELDEGYSWLVLTESDQGQGLAAIDIGGSLPSEEDATAALHDAMRLVHGPGWRH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099810

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences