NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F099709

Metagenome Family F099709

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099709
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 40 residues
Representative Sequence MALLVAEREIEMNSRGGGVGIVGVIIIVLVILWLVHVI
Number of Associated Samples 74
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 13.00 %
% of genes near scaffold ends (potentially truncated) 23.30 %
% of genes from short scaffolds (< 2000 bps) 83.50 %
Associated GOLD sequencing projects 55
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (51.456 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil
(54.369 % of family members)
Environment Ontology (ENVO) Unclassified
(46.602 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(82.524 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54
1P1_DRAFT_00856950
2P1_DRAFT_00235230
3P3_DRAFT_00671170
4beta3_all_00993270
5Perma_A_C_04308630
6B3_v_00110250
7P1_C_00364270
8Bog_all_C_02770030
9JGI20191J14862_10096013
10JGI20179J14886_10163273
11JGI24129J20441_10389363
12JGIcombinedJ21911_100630492
13JGIcombinedJ21911_100795951
14JGIcombinedJ21913_101517251
15JGIcombinedJ21913_102097043
16JGIcombinedJ21913_102148161
17JGIcombinedJ21912_100280792
18JGIcombinedJ21912_101345941
19JGIcombinedJ21912_102858872
20JGIcombinedJ21915_100493851
21JGIcombinedJ21915_100877723
22JGIcombinedJ21915_101163462
23JGI24130J36418_100257221
24JGI24131J36419_100807042
25JGI24138J36424_100377813
26JGI24134J36421_100753411
27JGI24136J36422_100206142
28JGI24136J36422_100302442
29Ga0070707_1010607731
30Ga0066795_100007878
31Ga0066795_100358512
32Ga0066795_102270691
33Ga0066794_100640891
34Ga0066794_102219771
35Ga0075417_101845134
36Ga0070716_1016595322
37Ga0075527_100131913
38Ga0075527_102191152
39Ga0075521_101679302
40Ga0075520_10440516
41Ga0075520_11166592
42Ga0075520_13169141
43Ga0066797_10845713
44Ga0066797_12698431
45Ga0075528_100177893
46Ga0075528_102040452
47Ga0075524_104376381
48Ga0120148_10458961
49Ga0120127_100225892
50Ga0120147_10175022
51Ga0120181_10990672
52Ga0182010_105066302
53Ga0182010_107083501
54Ga0182017_106537402
55Ga0182019_101418973
56Ga0182027_107256161
57Ga0182027_123737562
58Ga0184605_100967683
59Ga0184605_101948533
60Ga0184608_103038392
61Ga0184619_100269505
62Ga0184619_101090772
63Ga0256681_103272784
64Ga0256681_125141363
65Ga0208081_10083835
66Ga0208081_10341082
67Ga0208850_10490342
68Ga0208587_11039581
69Ga0207932_10548852
70Ga0208584_10660332
71Ga0208584_10918881
72Ga0208716_10270322
73Ga0208080_10696801
74Ga0209385_10289161
75Ga0209385_10949802
76Ga0209744_11634702
77Ga0209745_11767421
78Ga0209745_12065071
79Ga0209539_11073792
80Ga0209748_10730461
81Ga0209538_10833511
82Ga0209538_12024262
83Ga0209176_100527991
84Ga0209014_101913802
85Ga0209429_102299261
86Ga0209226_100895533
87Ga0209226_103079451
88Ga0209584_100097172
89Ga0209540_100826621
90Ga0209540_106571642
91Ga0209585_103664181
92Ga0207665_111241342
93Ga0209880_10109903
94Ga0209814_100398772
95Ga0307282_100332823
96Ga0307284_103816451
97Ga0302323_1019708452
98Ga0255312_10581081
99Ga0302322_1021523631
100Ga0311301_114184211
101Ga0334822_065692_563_679
102Ga0370487_0174034_36_152
103Ga0370501_0071841_791_913
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 46.97%    β-sheet: 0.00%    Coil/Unstructured: 53.03%
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5101520253035MALLVAEREIEMNSRGGGVGIVGVIIIVLVILWLVHVIExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
48.5%51.5%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater
Groundwater Sediment
Soil
Peatlands Soil
Arctic Peat Soil
Permafrost
Soil
Untreated Peat Soil
Fen
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Sandy Soil
Soil
Fen
Populus Rhizosphere
4.9%54.4%3.9%7.8%5.8%7.8%2.9%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
P1_DRAFT_008569502088090004SoilMAAKVIGREIEMNSRSGGIGIVGVIVIVLVILWLVGVIKL
P1_DRAFT_002352302088090004SoilMRRPNGRAVTEREIEMNSRTGGVGIVGVIIIVLVVLWLLKVI
P3_DRAFT_006711702088090008SoilMAVQVIGREIKMNSRSGGIGIVGVIVIILVILWLVGVIKL
beta3_all_009932702124908028SoilVQPRSISRKLALLVAEREIEMNSRGGGVGIVGVIIIVLVILWLVHVI
Perma_A_C_043086302124908032SoilRLNGLTGQEIEMNYRSGGVGIVGVIVIVLVILWLVGVIKL
B3_v_001102502124908039SoilVQPRSISRKLASLVAEREIEMYSRGGGVGIVGVIIIVLVILWLVHVI
P1_C_003642702140918006SoilMAHLLVTRSEIDMNYRSGGIGIVGVIVIVLVILFLVGVIKL
Bog_all_C_027700302140918008SoilVQPRSISRKLALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLVHVI
JGI20191J14862_100960133300001394Arctic Peat SoilMVGLVIEQEIDMNYRSGGIGIVGVIVIVVVILFXVGVIKL*
JGI20179J14886_101632733300001410Arctic Peat SoilVAFLATEREIEMNYRSGGIGIVGVIVIVVVILFLV
JGI24129J20441_103893633300001870Arctic Peat SoilMALLVAEREIEMNSRGGGVGIVGVIIIVLVILWLVHVI*
JGIcombinedJ21911_1006304923300002066Arctic Peat SoilMAVQVIGREIEMNSRSGGIGIVGVIVIVLVILWLAHVI*
JGIcombinedJ21911_1007959513300002066Arctic Peat SoilVQPRSISRKLALLVAEREIEMNSRGGGVGIVGVIIIVLVIL
JGIcombinedJ21913_1015172513300002068Arctic Peat SoilVQPRSISRKLALLVAEREIEMYSRGGGIGIVGVIIIVLVILWLIHVI*
JGIcombinedJ21913_1020970433300002068Arctic Peat SoilVAFLATEREIEMNYRSGGIGIVGVIVIVVVILFLVGV
JGIcombinedJ21913_1021481613300002068Arctic Peat SoilMRRPNGRAATEREIEMNSRTGGIGIVGVIIIVLVVLWLLKVI*
JGIcombinedJ21912_1002807923300002069Arctic Peat SoilVTNLETKMNYRSGGIGIVGVIVIVIVVLFLLGRL*
JGIcombinedJ21912_1013459413300002069Arctic Peat SoilMAVQVIGREIMNSRSGGIGIVGVIVIVLVILWLVGVIKL*
JGIcombinedJ21912_1028588723300002069Arctic Peat SoilAFLATEREIEMNYRSGGVGIVGVIIIVLVILWLVHVI*
JGIcombinedJ21915_1004938513300002071Arctic Peat SoilMASLVAEREIKMYSRGGGIGIVGVIIIVLVILWLVHVI*
JGIcombinedJ21915_1008777233300002071Arctic Peat SoilMALLVAEREIEMNYRSGGVGIVGVIVIVLVILWLVHVI*
JGIcombinedJ21915_1011634623300002071Arctic Peat SoilAVQVIGREIEMNSRSGGIGIVGVIVIVLVILWLAHVI*
JGI24130J36418_1002572213300002549Arctic Peat SoilMAVQVIGREIEMNSRSGGIGIVGVIVIXLVILWLVGVIKL*
JGI24131J36419_1008070423300002550Arctic Peat SoilMAVQVIGREIEMNSRSGGIGIVGVIVIVLVILWLVGVIKL*
JGI24138J36424_1003778133300002563Arctic Peat SoilMRRPNGRAATEGEIEMNSRTGGVGIVGVIIIVLVILWLLKVI*
JGI24134J36421_1007534113300002564Arctic Peat SoilMVGLVIEQEIDMNYRSGGIGIVGVIFIVVVILFLVGVIKL*
JGI24136J36422_1002061423300002569Arctic Peat SoilMAVQVIGREIEMNSRSGGIGIXGVIVIVLVILWLVGVIKL*
JGI24136J36422_1003024423300002569Arctic Peat SoilMRRPNGRAVTEREIEMNSRTGGVGIVGVIIIVLVVLWLLKVI*
Ga0070707_10106077313300005468Corn, Switchgrass And Miscanthus RhizosphereMALLASQREIEMYRSGGIGIVGVIVIVLVILWLVGVIKL*
Ga0066795_1000078783300005938SoilMALLVAEWEIEMNSRGGGVGIVGVIIIVLVILWLVHVI*
Ga0066795_1003585123300005938SoilMAVQVIGREIKMNSRSGGIGIVGVIIIVLVILWLVHVI*
Ga0066795_1022706913300005938SoilVAFLATEREIEMNYRSGGVGIVGVIIIVLVILWLVHVI*
Ga0066794_1006408913300005947SoilCEAAAARLTHMRRPNGRAVTEREIEMNSRTGGVGIVGVIIIVLVVLWLLKVI*
Ga0066794_1022197713300005947SoilMVGLVIEQEIDINYRSGGIGIVGVIFIVVVILFLVGVIKL*
Ga0075417_1018451343300006049Populus RhizosphereLGVVTNLEMKMNYRSGGIGIVGVIVIVLIVLFVVGRL*
Ga0070716_10165953223300006173Corn, Switchgrass And Miscanthus RhizosphereVSQREIEMYIGGGIGIVGVIVIVLVILWLVGVIKL*
Ga0075527_1001319133300006640Arctic Peat SoilMALLVAEREIEMYSRGGGIGIVGVIIIVLVILWLIHVI*
Ga0075527_1021911523300006640Arctic Peat SoilMAVQVIGREIEMNSRSGGIGIIGVIVIVLVILWLVGVIKL*
Ga0075521_1016793023300006642Arctic Peat SoilVQPRSISRTLALLVAEREIDMYSRGGGVGIVGVIIIVLVILWLIHVI*
Ga0075520_104405163300006795Arctic Peat SoilVQPRGISRKLALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLVHVI*
Ga0075520_111665923300006795Arctic Peat SoilMAAKVIGREIEMNSRSGGIGIVGVIVIVLVILWLLHVI*
Ga0075520_131691413300006795Arctic Peat SoilVSAEDGPLVAEREIEMYSRGGGVGIVGVIIIVLVILWLLHVI*
Ga0066797_108457133300006864SoilMAAKVIGREIEMNSRSGGIGIVGVIVIILVILWLVGVIKL*
Ga0066797_126984313300006864SoilVQPRSIGRKLALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLIHVI*
Ga0075528_1001778933300006949Arctic Peat SoilMAVQVIGREIEMNSRSGGIGIVGVIVIVLVILWLLHVI*
Ga0075528_1020404523300006949Arctic Peat SoilVQPLSISRKLALLVAEREIEMNSRGGGVGIVGVIIIVLVILWLVHVI*
Ga0075524_1043763813300006950Arctic Peat SoilVQPRSISRKLALLVAEREIEMYSRGGGVGIVGVIIIVLVVLWLIHVI*
Ga0120148_104589613300011999PermafrostPQHDPVPEQEIEMRNGGVGIIGVIVIVLVILWLAGVIKL*
Ga0120127_1002258923300013503PermafrostMAAVAHHWEIEMNRNGGIGIIGVIVIVLVILWLLGVIKL*
Ga0120147_101750223300013758PermafrostVPEQEIEMRNGGVGIIGVIVVVLVILWLVGVIRL*
Ga0120181_109906723300013766PermafrostVPEQEIEMRNGGVGIIGVIVIVLVILWLAGVIKL*
Ga0182010_1050663023300014490FenVQPRSISRKLALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLVHVI*
Ga0182010_1070835013300014490FenVQPRSISRKLALLVAEQEIEMYSRGGGVGIVGVIIIVLV
Ga0182017_1065374023300014494FenMALLVAEREIEMYSRGGGIGIVGVIIIVLVILWLVHVI*
Ga0182019_1014189733300014498FenVQPRSISRKLALLVAEREIEMNSRGGGVGIVGVILIVLVILWLVHVI*
Ga0182027_1072561613300014839FenVQPRSLSRKLALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLVHVI*
Ga0182027_1237375623300014839FenRALLATEVEIEMNRGGGVGIVGVIVIVLVILWLVHVI*
Ga0184605_1009676833300018027Groundwater SedimentMALLGAGWEVEMRGGGIGIIGVIVIVLVILWLLGYIKL
Ga0184605_1019485333300018027Groundwater SedimentSGTALSACQTEVDMNRGGGIGIVGVIIIVLVILWLVGVIKV
Ga0184608_1030383923300018028Groundwater SedimentMGRMALLGARWEVEMRGGGIGIIGVIVIVLVILWLLGYIKL
Ga0184619_1002695053300018061Groundwater SedimentMALLGARWEVEMRGGGIGIIGVIVIVLVILWLLGYIKL
Ga0184619_1010907723300018061Groundwater SedimentMGRMALLGAGWEVEMRGGGIGIIGVIVIVLVILWLLGYIKL
Ga0256681_1032727843300023311FreshwaterRRMALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLVHVI
Ga0256681_1251413633300023311FreshwaterMPARRLSGFSATEREIEMNYRSGGVGIVGVIIIVLVILWLLHVI
Ga0208081_100838353300025443Arctic Peat SoilMGLLVTEREIEMNYRSGGIGIVGVIIIVLVILWLVHVI
Ga0208081_103410823300025443Arctic Peat SoilMAVQVIGREIEMNSRSGGIGIVGVIVIVLVILWLAHVI
Ga0208850_104903423300025457Arctic Peat SoilVAFLATEREIEMNYRSGGVGIVGVIIIVLVILWLVHVI
Ga0208587_110395813300025484Arctic Peat SoilVALSATGWEIEMNYRSGGVGIVGVIVIVLVILWLVHVI
Ga0207932_105488523300025495Arctic Peat SoilMRRPNGRAATEGEIEMNSRTGGVGIVGVIIIVLVILWLLKVI
Ga0208584_106603323300025533Arctic Peat SoilVQPPSISRKLALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLIHVI
Ga0208584_109188813300025533Arctic Peat SoilVQPRSISRKLALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLIHVI
Ga0208716_102703223300025548Arctic Peat SoilMAAKVIGREIEMNSRSGGIGIVGVIVIILVILWLVGVIKL
Ga0208080_106968013300025553Arctic Peat SoilLEWPSWILESENEMNNRGGGVGIVGVIVIVLVVLWLLHVI
Ga0209385_102891613300025650Arctic Peat SoilRKLASLVAEREIEMYSRGGGVGIVGVIIIVLVILWLVHVI
Ga0209385_109498023300025650Arctic Peat SoilVQPRSISRTLALLVAEREIDMYSRGGGVGIVGVIIIVLVILWLIHVI
Ga0209744_116347023300025692Arctic Peat SoilVQPRSISRKLALLVAEREIEMYSRGGGIGIVGVIIIVLVILWLIHVI
Ga0209745_117674213300025739Arctic Peat SoilMAHLLVTKREIGMNYRSGGIGIVGVIVIVLVILFLVGVIKL
Ga0209745_120650713300025739Arctic Peat SoilMRRPNGRAATEREIEMNSRTGGIGIVGVIIIVLVVLWLLKVI
Ga0209539_110737923300025764Arctic Peat SoilMAVQVIGREIEMNSRSGGIGIVGVIVIVLVILWLLHVI
Ga0209748_107304613300025836Arctic Peat SoilAVQVIGREIEMNSRSGGIGIVGVIVIVLVILWLAHVI
Ga0209538_108335113300025846Arctic Peat SoilLALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLIHVI
Ga0209538_120242623300025846Arctic Peat SoilQSAGVVTNLETKMNYRSGGIGIVGVIVIVIVVLFLLGRL
Ga0209176_1005279913300025854Arctic Peat SoilMAVQVIGREIKMNSRSGGIGIVGVIIIVLVILWLAHVI
Ga0209014_1019138023300025857Arctic Peat SoilMGLLVTEREIEMNYRSGGVGIVGVIIIVLVILWLVHVI
Ga0209429_1022992613300025864Arctic Peat SoilVTRSEIGMNYRSGGIGIVGVIVIVLVILFLVGVIKL
Ga0209226_1008955333300025865Arctic Peat SoilMASLVAEREIKMYSRGGGIGIVGVIIIVLVILWLVHVI
Ga0209226_1030794513300025865Arctic Peat SoilMAHLLVTRSEIGMNYRSGGIGIVGVIVIVLVILFLVGVIKL
Ga0209584_1000971723300025878Arctic Peat SoilVSAEDGPLVAEREIEMYSRGGGVGIVGVIIIVLVILWLLHVI
Ga0209540_1008266213300025888Arctic Peat SoilMALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLIHVI
Ga0209540_1065716423300025888Arctic Peat SoilALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLIHVI
Ga0209585_1036641813300025891Arctic Peat SoilVQPRSISRKLALLVAEREIEMYSRGGGVGIVGVIIIVLVVLWLIHVI
Ga0207665_1112413423300025939Corn, Switchgrass And Miscanthus RhizosphereVVSQREIEMYIGGGIGIVGVIVIVLVILWLVGVIKL
Ga0209880_101099033300026271SoilMAVQVIGREIKMNSRSGGIGIVGVIIIVLVILWLVHVI
Ga0209814_1003987723300027873Populus RhizosphereLGVVTNLEMKMNYRSGGIGIVGVIVIVLIVLFVVGRL
Ga0307282_1003328233300028784SoilMALLGARWEVEMRGGGIGIIGVIVIVLVILWLLGYIK
Ga0307284_1038164513300028799SoilRMALLGAGWEVEMRGGGIGIIGVIVIVLVILWLLGYIKL
Ga0302323_10197084523300031232FenVQPRSISRKLALLVAEREIEMNSRGGGVGIVGVILIVLVILWLVHVI
(restricted) Ga0255312_105810813300031248Sandy SoilDTQLNGRSSMNYRTGGVGIVGVIVIVLVILWLVGVIKI
Ga0302322_10215236313300031902FenAFLATEVEIEMNRGGGVGIVGVIVIVLVILWLVHVI
Ga0311301_1141842113300032160Peatlands SoilSRRATREVDMNRGGGVGIVGVIVIVLVILWLVHVI
Ga0334822_065692_563_6793300034070SoilMAFLATEREIEMNYRSGGVGIVGVIIIVLVILWLLKVI
Ga0370487_0174034_36_1523300034170Untreated Peat SoilMASLVSGRESEMNSRTGGVGIVGVIVIVLVILWLLKVI
Ga0370501_0071841_791_9133300034195Untreated Peat SoilMGLLVTEREIEMNYRSGGIGIVGVIVIVLVILFLVGVIKL


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