Basic Information | |
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Family ID | F099709 |
Family Type | Metagenome |
Number of Sequences | 103 |
Average Sequence Length | 40 residues |
Representative Sequence | MALLVAEREIEMNSRGGGVGIVGVIIIVLVILWLVHVI |
Number of Associated Samples | 74 |
Number of Associated Scaffolds | 103 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 13.00 % |
% of genes near scaffold ends (potentially truncated) | 23.30 % |
% of genes from short scaffolds (< 2000 bps) | 83.50 % |
Associated GOLD sequencing projects | 55 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.42 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (51.456 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil (54.369 % of family members) |
Environment Ontology (ENVO) | Unclassified (46.602 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (82.524 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 46.97% β-sheet: 0.00% Coil/Unstructured: 53.03% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.42 |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Freshwater Groundwater Sediment Soil Peatlands Soil Arctic Peat Soil Permafrost Soil Untreated Peat Soil Fen Soil Corn, Switchgrass And Miscanthus Rhizosphere Sandy Soil Soil Fen Populus Rhizosphere |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
P1_DRAFT_00856950 | 2088090004 | Soil | MAAKVIGREIEMNSRSGGIGIVGVIVIVLVILWLVGVIKL |
P1_DRAFT_00235230 | 2088090004 | Soil | MRRPNGRAVTEREIEMNSRTGGVGIVGVIIIVLVVLWLLKVI |
P3_DRAFT_00671170 | 2088090008 | Soil | MAVQVIGREIKMNSRSGGIGIVGVIVIILVILWLVGVIKL |
beta3_all_00993270 | 2124908028 | Soil | VQPRSISRKLALLVAEREIEMNSRGGGVGIVGVIIIVLVILWLVHVI |
Perma_A_C_04308630 | 2124908032 | Soil | RLNGLTGQEIEMNYRSGGVGIVGVIVIVLVILWLVGVIKL |
B3_v_00110250 | 2124908039 | Soil | VQPRSISRKLASLVAEREIEMYSRGGGVGIVGVIIIVLVILWLVHVI |
P1_C_00364270 | 2140918006 | Soil | MAHLLVTRSEIDMNYRSGGIGIVGVIVIVLVILFLVGVIKL |
Bog_all_C_02770030 | 2140918008 | Soil | VQPRSISRKLALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLVHVI |
JGI20191J14862_10096013 | 3300001394 | Arctic Peat Soil | MVGLVIEQEIDMNYRSGGIGIVGVIVIVVVILFXVGVIKL* |
JGI20179J14886_10163273 | 3300001410 | Arctic Peat Soil | VAFLATEREIEMNYRSGGIGIVGVIVIVVVILFLV |
JGI24129J20441_10389363 | 3300001870 | Arctic Peat Soil | MALLVAEREIEMNSRGGGVGIVGVIIIVLVILWLVHVI* |
JGIcombinedJ21911_100630492 | 3300002066 | Arctic Peat Soil | MAVQVIGREIEMNSRSGGIGIVGVIVIVLVILWLAHVI* |
JGIcombinedJ21911_100795951 | 3300002066 | Arctic Peat Soil | VQPRSISRKLALLVAEREIEMNSRGGGVGIVGVIIIVLVIL |
JGIcombinedJ21913_101517251 | 3300002068 | Arctic Peat Soil | VQPRSISRKLALLVAEREIEMYSRGGGIGIVGVIIIVLVILWLIHVI* |
JGIcombinedJ21913_102097043 | 3300002068 | Arctic Peat Soil | VAFLATEREIEMNYRSGGIGIVGVIVIVVVILFLVGV |
JGIcombinedJ21913_102148161 | 3300002068 | Arctic Peat Soil | MRRPNGRAATEREIEMNSRTGGIGIVGVIIIVLVVLWLLKVI* |
JGIcombinedJ21912_100280792 | 3300002069 | Arctic Peat Soil | VTNLETKMNYRSGGIGIVGVIVIVIVVLFLLGRL* |
JGIcombinedJ21912_101345941 | 3300002069 | Arctic Peat Soil | MAVQVIGREIMNSRSGGIGIVGVIVIVLVILWLVGVIKL* |
JGIcombinedJ21912_102858872 | 3300002069 | Arctic Peat Soil | AFLATEREIEMNYRSGGVGIVGVIIIVLVILWLVHVI* |
JGIcombinedJ21915_100493851 | 3300002071 | Arctic Peat Soil | MASLVAEREIKMYSRGGGIGIVGVIIIVLVILWLVHVI* |
JGIcombinedJ21915_100877723 | 3300002071 | Arctic Peat Soil | MALLVAEREIEMNYRSGGVGIVGVIVIVLVILWLVHVI* |
JGIcombinedJ21915_101163462 | 3300002071 | Arctic Peat Soil | AVQVIGREIEMNSRSGGIGIVGVIVIVLVILWLAHVI* |
JGI24130J36418_100257221 | 3300002549 | Arctic Peat Soil | MAVQVIGREIEMNSRSGGIGIVGVIVIXLVILWLVGVIKL* |
JGI24131J36419_100807042 | 3300002550 | Arctic Peat Soil | MAVQVIGREIEMNSRSGGIGIVGVIVIVLVILWLVGVIKL* |
JGI24138J36424_100377813 | 3300002563 | Arctic Peat Soil | MRRPNGRAATEGEIEMNSRTGGVGIVGVIIIVLVILWLLKVI* |
JGI24134J36421_100753411 | 3300002564 | Arctic Peat Soil | MVGLVIEQEIDMNYRSGGIGIVGVIFIVVVILFLVGVIKL* |
JGI24136J36422_100206142 | 3300002569 | Arctic Peat Soil | MAVQVIGREIEMNSRSGGIGIXGVIVIVLVILWLVGVIKL* |
JGI24136J36422_100302442 | 3300002569 | Arctic Peat Soil | MRRPNGRAVTEREIEMNSRTGGVGIVGVIIIVLVVLWLLKVI* |
Ga0070707_1010607731 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | MALLASQREIEMYRSGGIGIVGVIVIVLVILWLVGVIKL* |
Ga0066795_100007878 | 3300005938 | Soil | MALLVAEWEIEMNSRGGGVGIVGVIIIVLVILWLVHVI* |
Ga0066795_100358512 | 3300005938 | Soil | MAVQVIGREIKMNSRSGGIGIVGVIIIVLVILWLVHVI* |
Ga0066795_102270691 | 3300005938 | Soil | VAFLATEREIEMNYRSGGVGIVGVIIIVLVILWLVHVI* |
Ga0066794_100640891 | 3300005947 | Soil | CEAAAARLTHMRRPNGRAVTEREIEMNSRTGGVGIVGVIIIVLVVLWLLKVI* |
Ga0066794_102219771 | 3300005947 | Soil | MVGLVIEQEIDINYRSGGIGIVGVIFIVVVILFLVGVIKL* |
Ga0075417_101845134 | 3300006049 | Populus Rhizosphere | LGVVTNLEMKMNYRSGGIGIVGVIVIVLIVLFVVGRL* |
Ga0070716_1016595322 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | VSQREIEMYIGGGIGIVGVIVIVLVILWLVGVIKL* |
Ga0075527_100131913 | 3300006640 | Arctic Peat Soil | MALLVAEREIEMYSRGGGIGIVGVIIIVLVILWLIHVI* |
Ga0075527_102191152 | 3300006640 | Arctic Peat Soil | MAVQVIGREIEMNSRSGGIGIIGVIVIVLVILWLVGVIKL* |
Ga0075521_101679302 | 3300006642 | Arctic Peat Soil | VQPRSISRTLALLVAEREIDMYSRGGGVGIVGVIIIVLVILWLIHVI* |
Ga0075520_10440516 | 3300006795 | Arctic Peat Soil | VQPRGISRKLALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLVHVI* |
Ga0075520_11166592 | 3300006795 | Arctic Peat Soil | MAAKVIGREIEMNSRSGGIGIVGVIVIVLVILWLLHVI* |
Ga0075520_13169141 | 3300006795 | Arctic Peat Soil | VSAEDGPLVAEREIEMYSRGGGVGIVGVIIIVLVILWLLHVI* |
Ga0066797_10845713 | 3300006864 | Soil | MAAKVIGREIEMNSRSGGIGIVGVIVIILVILWLVGVIKL* |
Ga0066797_12698431 | 3300006864 | Soil | VQPRSIGRKLALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLIHVI* |
Ga0075528_100177893 | 3300006949 | Arctic Peat Soil | MAVQVIGREIEMNSRSGGIGIVGVIVIVLVILWLLHVI* |
Ga0075528_102040452 | 3300006949 | Arctic Peat Soil | VQPLSISRKLALLVAEREIEMNSRGGGVGIVGVIIIVLVILWLVHVI* |
Ga0075524_104376381 | 3300006950 | Arctic Peat Soil | VQPRSISRKLALLVAEREIEMYSRGGGVGIVGVIIIVLVVLWLIHVI* |
Ga0120148_10458961 | 3300011999 | Permafrost | PQHDPVPEQEIEMRNGGVGIIGVIVIVLVILWLAGVIKL* |
Ga0120127_100225892 | 3300013503 | Permafrost | MAAVAHHWEIEMNRNGGIGIIGVIVIVLVILWLLGVIKL* |
Ga0120147_10175022 | 3300013758 | Permafrost | VPEQEIEMRNGGVGIIGVIVVVLVILWLVGVIRL* |
Ga0120181_10990672 | 3300013766 | Permafrost | VPEQEIEMRNGGVGIIGVIVIVLVILWLAGVIKL* |
Ga0182010_105066302 | 3300014490 | Fen | VQPRSISRKLALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLVHVI* |
Ga0182010_107083501 | 3300014490 | Fen | VQPRSISRKLALLVAEQEIEMYSRGGGVGIVGVIIIVLV |
Ga0182017_106537402 | 3300014494 | Fen | MALLVAEREIEMYSRGGGIGIVGVIIIVLVILWLVHVI* |
Ga0182019_101418973 | 3300014498 | Fen | VQPRSISRKLALLVAEREIEMNSRGGGVGIVGVILIVLVILWLVHVI* |
Ga0182027_107256161 | 3300014839 | Fen | VQPRSLSRKLALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLVHVI* |
Ga0182027_123737562 | 3300014839 | Fen | RALLATEVEIEMNRGGGVGIVGVIVIVLVILWLVHVI* |
Ga0184605_100967683 | 3300018027 | Groundwater Sediment | MALLGAGWEVEMRGGGIGIIGVIVIVLVILWLLGYIKL |
Ga0184605_101948533 | 3300018027 | Groundwater Sediment | SGTALSACQTEVDMNRGGGIGIVGVIIIVLVILWLVGVIKV |
Ga0184608_103038392 | 3300018028 | Groundwater Sediment | MGRMALLGARWEVEMRGGGIGIIGVIVIVLVILWLLGYIKL |
Ga0184619_100269505 | 3300018061 | Groundwater Sediment | MALLGARWEVEMRGGGIGIIGVIVIVLVILWLLGYIKL |
Ga0184619_101090772 | 3300018061 | Groundwater Sediment | MGRMALLGAGWEVEMRGGGIGIIGVIVIVLVILWLLGYIKL |
Ga0256681_103272784 | 3300023311 | Freshwater | RRMALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLVHVI |
Ga0256681_125141363 | 3300023311 | Freshwater | MPARRLSGFSATEREIEMNYRSGGVGIVGVIIIVLVILWLLHVI |
Ga0208081_10083835 | 3300025443 | Arctic Peat Soil | MGLLVTEREIEMNYRSGGIGIVGVIIIVLVILWLVHVI |
Ga0208081_10341082 | 3300025443 | Arctic Peat Soil | MAVQVIGREIEMNSRSGGIGIVGVIVIVLVILWLAHVI |
Ga0208850_10490342 | 3300025457 | Arctic Peat Soil | VAFLATEREIEMNYRSGGVGIVGVIIIVLVILWLVHVI |
Ga0208587_11039581 | 3300025484 | Arctic Peat Soil | VALSATGWEIEMNYRSGGVGIVGVIVIVLVILWLVHVI |
Ga0207932_10548852 | 3300025495 | Arctic Peat Soil | MRRPNGRAATEGEIEMNSRTGGVGIVGVIIIVLVILWLLKVI |
Ga0208584_10660332 | 3300025533 | Arctic Peat Soil | VQPPSISRKLALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLIHVI |
Ga0208584_10918881 | 3300025533 | Arctic Peat Soil | VQPRSISRKLALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLIHVI |
Ga0208716_10270322 | 3300025548 | Arctic Peat Soil | MAAKVIGREIEMNSRSGGIGIVGVIVIILVILWLVGVIKL |
Ga0208080_10696801 | 3300025553 | Arctic Peat Soil | LEWPSWILESENEMNNRGGGVGIVGVIVIVLVVLWLLHVI |
Ga0209385_10289161 | 3300025650 | Arctic Peat Soil | RKLASLVAEREIEMYSRGGGVGIVGVIIIVLVILWLVHVI |
Ga0209385_10949802 | 3300025650 | Arctic Peat Soil | VQPRSISRTLALLVAEREIDMYSRGGGVGIVGVIIIVLVILWLIHVI |
Ga0209744_11634702 | 3300025692 | Arctic Peat Soil | VQPRSISRKLALLVAEREIEMYSRGGGIGIVGVIIIVLVILWLIHVI |
Ga0209745_11767421 | 3300025739 | Arctic Peat Soil | MAHLLVTKREIGMNYRSGGIGIVGVIVIVLVILFLVGVIKL |
Ga0209745_12065071 | 3300025739 | Arctic Peat Soil | MRRPNGRAATEREIEMNSRTGGIGIVGVIIIVLVVLWLLKVI |
Ga0209539_11073792 | 3300025764 | Arctic Peat Soil | MAVQVIGREIEMNSRSGGIGIVGVIVIVLVILWLLHVI |
Ga0209748_10730461 | 3300025836 | Arctic Peat Soil | AVQVIGREIEMNSRSGGIGIVGVIVIVLVILWLAHVI |
Ga0209538_10833511 | 3300025846 | Arctic Peat Soil | LALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLIHVI |
Ga0209538_12024262 | 3300025846 | Arctic Peat Soil | QSAGVVTNLETKMNYRSGGIGIVGVIVIVIVVLFLLGRL |
Ga0209176_100527991 | 3300025854 | Arctic Peat Soil | MAVQVIGREIKMNSRSGGIGIVGVIIIVLVILWLAHVI |
Ga0209014_101913802 | 3300025857 | Arctic Peat Soil | MGLLVTEREIEMNYRSGGVGIVGVIIIVLVILWLVHVI |
Ga0209429_102299261 | 3300025864 | Arctic Peat Soil | VTRSEIGMNYRSGGIGIVGVIVIVLVILFLVGVIKL |
Ga0209226_100895533 | 3300025865 | Arctic Peat Soil | MASLVAEREIKMYSRGGGIGIVGVIIIVLVILWLVHVI |
Ga0209226_103079451 | 3300025865 | Arctic Peat Soil | MAHLLVTRSEIGMNYRSGGIGIVGVIVIVLVILFLVGVIKL |
Ga0209584_100097172 | 3300025878 | Arctic Peat Soil | VSAEDGPLVAEREIEMYSRGGGVGIVGVIIIVLVILWLLHVI |
Ga0209540_100826621 | 3300025888 | Arctic Peat Soil | MALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLIHVI |
Ga0209540_106571642 | 3300025888 | Arctic Peat Soil | ALLVAEREIEMYSRGGGVGIVGVIIIVLVILWLIHVI |
Ga0209585_103664181 | 3300025891 | Arctic Peat Soil | VQPRSISRKLALLVAEREIEMYSRGGGVGIVGVIIIVLVVLWLIHVI |
Ga0207665_111241342 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | VVSQREIEMYIGGGIGIVGVIVIVLVILWLVGVIKL |
Ga0209880_10109903 | 3300026271 | Soil | MAVQVIGREIKMNSRSGGIGIVGVIIIVLVILWLVHVI |
Ga0209814_100398772 | 3300027873 | Populus Rhizosphere | LGVVTNLEMKMNYRSGGIGIVGVIVIVLIVLFVVGRL |
Ga0307282_100332823 | 3300028784 | Soil | MALLGARWEVEMRGGGIGIIGVIVIVLVILWLLGYIK |
Ga0307284_103816451 | 3300028799 | Soil | RMALLGAGWEVEMRGGGIGIIGVIVIVLVILWLLGYIKL |
Ga0302323_1019708452 | 3300031232 | Fen | VQPRSISRKLALLVAEREIEMNSRGGGVGIVGVILIVLVILWLVHVI |
(restricted) Ga0255312_10581081 | 3300031248 | Sandy Soil | DTQLNGRSSMNYRTGGVGIVGVIVIVLVILWLVGVIKI |
Ga0302322_1021523631 | 3300031902 | Fen | AFLATEVEIEMNRGGGVGIVGVIVIVLVILWLVHVI |
Ga0311301_114184211 | 3300032160 | Peatlands Soil | SRRATREVDMNRGGGVGIVGVIVIVLVILWLVHVI |
Ga0334822_065692_563_679 | 3300034070 | Soil | MAFLATEREIEMNYRSGGVGIVGVIIIVLVILWLLKVI |
Ga0370487_0174034_36_152 | 3300034170 | Untreated Peat Soil | MASLVSGRESEMNSRTGGVGIVGVIVIVLVILWLLKVI |
Ga0370501_0071841_791_913 | 3300034195 | Untreated Peat Soil | MGLLVTEREIEMNYRSGGIGIVGVIVIVLVILFLVGVIKL |
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