Metagenome Family F099702

Overview

Basic Information

• Family ID: F099702
• Family Type: Metagenome
• Number of Sequences: 103
• Average Sequence Length: 59 residues
• Representative Sequence: MQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSARN
• Number of Associated Samples: 90
• Number of Associated Scaffolds: 103

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 68.93 %
• % of genes near scaffold ends (potentially truncated): 33.01 %
• % of genes from short scaffolds (< 2000 bps): 85.44 %
• Associated GOLD sequencing projects: 83
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (55.340 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds (11.650 % of family members)
• Environment Ontology (ENVO): Unclassified (29.126 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (49.515 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 64.77%
  β-sheet: 0.00%
  Coil/Unstructured: 35.23%

Predicted 3D Structure

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
f.63.1.1: Claudin	d3jbre_	3jbr	0.85601
f.63.1.1: Claudin	d3x29a_	3x29	0.85049
a.7.14.0: automated matches	d5fvka_	5fvk	0.842
a.25.1.2: Ribonucleotide reductase-like	d3n20b_	3n20	0.84107
a.25.1.0: automated matches	d5uwza_	5uwz	0.84068

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF12850	Metallophos_2	2.91
PF00154	RecA	1.94
PF02518	HATPase_c	1.94
PF13467	RHH_4	0.97
PF00072	Response_reg	0.97
PF04392	ABC_sub_bind	0.97
PF12071	DUF3551	0.97
PF07969	Amidohydro_3	0.97
PF13343	SBP_bac_6	0.97
PF13185	GAF_2	0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	1.94
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.97
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.97
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.97
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.97

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	44.66 %
Unclassified	root	N/A	55.34 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	44.66 %
Unclassified	root	N/A	55.34 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	44.66 %
Unclassified	root	N/A	55.34 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.95 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.97 %
Unclassified	root	N/A	55.34 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.21 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.97 %
Unclassified	root	N/A	55.34 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.97 %

Level 6

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	21.36 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.97 %
Unclassified	root	N/A	55.34 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.97 %

Level 7

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.97 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	15.53 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.97 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.97 %
Unclassified	root	N/A	55.34 %
unclassified Spartobacteria	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria	0.97 %

Level 8

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.97 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.97 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.97 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	11.65 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.97 %
Unclassified	root	N/A	55.34 %

Level 9

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.97 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.88 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.97 %
Rhodopseudomonas rhenobacensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	11.65 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.97 %
Unclassified	root	N/A	55.34 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.97 %

Level 10

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.97 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.88 %
Myxococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	0.97 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.97 %
Rhodopseudomonas rhenobacensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	11.65 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.97 %
Unclassified	root	N/A	55.34 %

Level 11

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.97 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.88 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.97 %
Rhodopseudomonas rhenobacensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	11.65 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.97 %
Unclassified	root	N/A	55.34 %
unclassified Myxococcus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus	0.97 %

Level 12

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.97 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.88 %
Myxococcus sp. RHSTA-1-4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. RHSTA-1-4	0.97 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.97 %
Rhodopseudomonas rhenobacensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	11.65 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.97 %
Unclassified	root	N/A	55.34 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300031150|Ga0255311_1041344	Not Available	967
(restricted) 3300031197|Ga0255310_10019330	All Organisms → cellular organisms → Bacteria → Proteobacteria	1754
(restricted) 3300031248|Ga0255312_1124387	Not Available	635
3300000045|ARCol0oldRDRAFT_c01335	Not Available	1681
3300000363|ICChiseqgaiiFebDRAFT_10778288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	500
3300000787|JGI11643J11755_11791614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	627
3300000891|JGI10214J12806_11584416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	1136
3300003369|JGI24140J50213_10010388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3563
3300004020|Ga0055440_10106495	Not Available	673
3300004114|Ga0062593_101218573	Not Available	791

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.96%
Host-Associated	Host-Associated	32.04%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	16.50%
Plants	Host-Associated → Plants	32.04%
Terrestrial	Environmental → Terrestrial	51.46%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	0.97%
Marine	Environmental → Aquatic → Marine	1.94%
Peat	Environmental → Terrestrial → Peat	5.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.50%
Roots	Host-Associated → Plants → Roots	2.91%
Sediment	Environmental → Aquatic → Sediment	13.59%
Soil	Environmental → Terrestrial → Soil	45.63%

Type

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.97%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.74%
Loam	Environmental → Terrestrial → Soil → Loam	16.50%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.94%
Sand	Environmental → Terrestrial → Soil → Sand	2.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	26.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	13.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.88%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.97%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	16.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.97%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.88%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.97%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	13.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.88%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.97%

Habitat

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.97%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.85%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	5.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.94%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.94%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	5.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.94%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.85%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	2.91%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.88%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	11.65%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000045	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis Col-0 old rhizosphere	Host-Associated
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental
3300004020	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2	Environmental
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ARCol0oldRDRAFT_013352	3300000045	Arabidopsis Rhizosphere	MQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADXAAHKLSARN
ICChiseqgaiiFebDRAFT_107782881	3300000363	Soil	ILTELATDAPALEDQLLYVAKKWVMLAILCEQLTAGADRAAHKLSARN*
JGI11643J11755_117916142	3300000787	Soil	MQIIRECRMRAAILTELATDAPALEDQLLYVAKKWVMLAILCEQLTAGADRAAXKXSARN
JGI10214J12806_115844163	3300000891	Soil	RMRAAILAELATDAPEFENQLLYVAKKWLMLANLCEQLTAGADRAAHKLSARN*
JGI24140J50213_100103881	3300003369	Arctic Peat Soil	MRARILTAIAKDDPEMKNQLLYVAEKWLALAILREQLLANADRTANKKPDKPHSRQ*
Ga0055440_101064952	3300004020	Natural And Restored Wetlands	MQIIRECRMRAAILTRIAKDAPELENQLLYVANKWLTLAILRGQLNAGADRVAHKLPARRSVGRGPGSVVGRY*
Ga0062593_1012185732	3300004114	Soil	MQIVRECRLRAAILTELAKDAPEPELESQLLYVAQDWLTLASLGEQLSADAELGGSTIRL
Ga0062590_1025802251	3300004157	Soil	AILAELATDAPEFENQLLYVAKKWLMLANLCEQLTAGADRAAHKLSARN*
Ga0063356_1019363841	3300004463	Arabidopsis Thaliana Rhizosphere	MQIIRECRTRAAILTELATDAPELENQLLYVAKKWLMLAILCEQLTAGADRAAHELSARN
Ga0063356_1053748991	3300004463	Arabidopsis Thaliana Rhizosphere	MQIIRECRMRAAILTELATDAPALEDQLLYVAKKWVMLAILCEQLTAGADRAAHKLSARN
Ga0066814_100323542	3300005162	Soil	MQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHK
Ga0068997_100973332	3300005204	Natural And Restored Wetlands	MQIIRECRMRAAIVIAIAKDAPELENQLLYVAEKWLTLAALREQLNAGAGRAAHKLPAPN
Ga0070676_104966951	3300005328	Miscanthus Rhizosphere	MRAVILIELAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFAPN*
Ga0070680_1000562406	3300005336	Corn Rhizosphere	MRAAILAELATDAPEFENQLLYVAKKWLMLANLCEQLTAGADRAAHKLSARN*
Ga0070687_1008008352	3300005343	Switchgrass Rhizosphere	TMRIIRECRMRAVILIELAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFAPN*
Ga0070688_1001560683	3300005365	Switchgrass Rhizosphere	MQIIRECRMRAAILTELATDAPGLEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSARN
Ga0070694_1006401882	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MQIIRECRMRAAILTELAEDAPELENQLLYVAKKWLMLANLCEQLTAGADRAAHKLSARN
Ga0070708_1015472391	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MGGSSVSQVGNGTVQIILECRMRAAILTGIAKDAPELKIPLLYLAQEWLTLANLSEQFNVDPDRTAQKLPARH*
Ga0070662_1002388363	3300005457	Corn Rhizosphere	MQIIRECRMRAAILAELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRARHKLFAP
Ga0070681_109064233	3300005458	Corn Rhizosphere	CRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSARN*
Ga0070685_114463631	3300005466	Switchgrass Rhizosphere	MQIVRECRLRAAILTELAKDAPEPELESQLLYVAQDWLTLASLREQLIADAQLGGPTIRL
Ga0070686_1011588421	3300005544	Switchgrass Rhizosphere	ILIELAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFAPN*
Ga0070695_1002539753	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MRIIRECRMRAVILIELAKDAPELENQLVYVAEKWLTLAIIGEQLSSGADRALHKLFAP
Ga0070695_1008294311	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	IIRECRMRAAILAELATDAPEFENQLLYVAKKWLMLANLCEQLTAGADRAAHKLSARN*
Ga0070665_1017233941	3300005548	Switchgrass Rhizosphere	SCVSQVGNGTMQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSARN*
Ga0070704_1008351191	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MRIIRECRMRAVILIELAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKL
Ga0075023_1001844502	3300006041	Watersheds	MQVIRECQVRAVILTELAKDAPEFENQLLYLAEKWLTLAIIGEQLNVDVDR
Ga0075417_100083531	3300006049	Populus Rhizosphere	VAMQIIRECRIRAAILTSIAKDAPELEIQLLYVAKEHLTLAIIIEQLNVGTYR
Ga0075028_1000062734	3300006050	Watersheds	MRATILIELAKDAPELEDQLLYVAKKWLTLAILSEQLNAGANLAANKLSARH*
Ga0075028_1002545902	3300006050	Watersheds	MQIIRECRMRAAILTAIAKDAPELESQLLYVAQKWLMLALLREQLNAGADQPPYRLRALR
Ga0075029_1003278802	3300006052	Watersheds	MQIIRECRMRAAILTAIAKDAPELESQLLYVAQNWLMLALLREQLNAGADQPP*
Ga0075026_1002211852	3300006057	Watersheds	MQIIRECRMRATILTELAKDAPELEDQLLYVAKKWLTLAILSEQLNAGANRAANKLSARH
Ga0075026_1009309401	3300006057	Watersheds	MLVVPVFPGVSQVGSGAMQIIRECRMRAAILTAIAKDAPELESQLLYVAQKWLMLALLREQLNAGADQPPYRLRALR*
Ga0075015_1006590421	3300006102	Watersheds	QIIRECRMRAAILTGLTKDAPELEIQLLYVAKIWLTLAILREQLNAAADRAAHKLPRRH*
Ga0075014_1000092784	3300006174	Watersheds	MLVVPVFPGVSQVGSGTMQIIRECRMRAAILTAIAKDAPELESQLLYVAQKWLMLALLREQLNAGADEPPYRLRALH*
Ga0075367_102682882	3300006178	Populus Endosphere	MQIVRECRLRAAILTELARDASEPELESQLLYVAQDWLTLACLREQLNADAQLRGPTLQS
Ga0097621_1009812031	3300006237	Miscanthus Rhizosphere	MQIVRECRLRAAILTELAKDTPEPEVESQLLYVAQDWLTLASLREQLIADA
Ga0068871_1021178442	3300006358	Miscanthus Rhizosphere	MQIVSECRLRAAILTELAKDTPEPELESQLLYVAQDWLTLASLREQLIADAQLGGPTIR*
Ga0075522_102565673	3300006638	Arctic Peat Soil	MRIIRECRMRARILTAIAKDDPEMKNQLLYVAEQWLALAMLREQLLANADRKPDKPHSRQ
Ga0075428_1001066492	3300006844	Populus Rhizosphere	MRAAILTGLAKDAPELEFQLLYVAKEYLALAMLREQLNADADRRAHKLPARH*
Ga0104326_1126372	3300007740	Soil	MQIARECRMRARILTAIAKDDPEMKNQLLYVAQKWLALAILREQLLAKADRKPDEPHSRQ
Ga0104325_1121242	3300007822	Soil	MQIARECRMRARILTATAKDDPEMKNQLLYVAQKWLALAILREQLLAKADRKPDEPHSRQ
Ga0105243_121165062	3300009148	Miscanthus Rhizosphere	MRIIRECRMRAVILIELAKDAPELENQLVYVAEKWLMLAIIAEQLSSGADRARHKLFAPN
Ga0111538_137725221	3300009156	Populus Rhizosphere	NAMQIIRECRLRAAILTELAKESPELESQLLYVARKWLALASIREQYVIDHAAHKLPALH
Ga0105242_131383521	3300009176	Miscanthus Rhizosphere	MQIIRECRMRAAILAELATDAPEFENQLLYVAKKWLMLANLCEQLTAG
Ga0134125_110404551	3300010371	Terrestrial Soil	MQIIHECRMRATILIELAKEAPELESQLLYVANKWLTLAVLREQLNASSDQATNKFSARH
Ga0105239_110186642	3300010375	Corn Rhizosphere	MQIVRECRLRAAILTELAKDAPEPELESQLLYVAQDWLTLASLREQLSADAEWGGSTIRL
Ga0134124_109709072	3300010397	Terrestrial Soil	MPIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRARHKLFAPN
Ga0134122_110084102	3300010400	Terrestrial Soil	MQIVRECRLRAAILTELAKDTPEPEVESQLLYVAQDWLTLASLREQLIADAQLGGPTIRL
Ga0134122_115755911	3300010400	Terrestrial Soil	MPIIRECRMRAAILAELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRARHKLFAPN
Ga0105246_120622942	3300011119	Miscanthus Rhizosphere	PCVSQVGSGTMRIIRECRMRAVILIELAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFAPN*
Ga0157323_10341742	3300012495	Arabidopsis Rhizosphere	MQIIRECRVRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSARN
Ga0157305_102907051	3300012891	Soil	MRAAILIGLAKDAPELENQLVYVAQKWLTLAIIAEQLSSGADRARHKLFAPN*
Ga0157306_104132151	3300012912	Soil	MQIIRECRMRAVILIELAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFAPN
Ga0164302_117541671	3300012961	Soil	GVAPCKSFAILTGLAKDGPELENQLLYVVKKWLTLAIIGEQLSSGADRALHKLFAPN*
Ga0164309_106757812	3300012984	Soil	MQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLMLAILSEQFNAGADAAAHKLSARN
Ga0163162_126558822	3300013306	Switchgrass Rhizosphere	MQIVRECRLRAAILTELAKDAPEPELESQLLYVAQDWLTLASLREQLSADAELGGSTIRL
Ga0120127_100076933	3300013503	Permafrost	MQIVRECRMRAWILTAIAKDDPEMKNQLLYVAEQWLALAMLREQLLANADRKPDKPHSRQ
Ga0120135_10195882	3300014054	Permafrost	MRIVRERRTRARILTAIAKDDPEMKNQLLYVAEKWLALAMLREQLLANADRKPDKPHSRQ
Ga0132258_110947132	3300015371	Arabidopsis Rhizosphere	MQIIRECRMRAAILTSIAKEAPELEIQLLYVAEEWLTLAIISEQLNAGTDCGGP*
Ga0132256_1024769091	3300015372	Arabidopsis Rhizosphere	RECRMRATILAELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRARHKLFAPN*
Ga0132255_1005758601	3300015374	Arabidopsis Rhizosphere	MQIIRECRMRAAILTSIAKEAPELEIQLLYVAEEWLTLAIISEQLNAGTDWGGP*
Ga0132255_1009476252	3300015374	Arabidopsis Rhizosphere	AAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRARHKLFAPN*
Ga0184611_12990011	3300018067	Groundwater Sediment	MPIIRECRMRAAILTGLAKDAPELENQLLYVAEKWLTLASIAEQLSSGADRALHKLFAPN
Ga0184635_100934651	3300018072	Groundwater Sediment	MPIIRECRMRAAILTGLAKDAPELENQLLYVAEKWLTLAIIAEQLSSGADRALHKLFAPN
Ga0173482_106075462	3300019361	Soil	AVGPCVSQVGSGTMRIIRECRMRAAILIELAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFAPN
Ga0247786_10364082	3300022883	Soil	MQIIRECRMRAAILAELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRARHKL
Ga0247793_10222732	3300023066	Soil	MQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSARN
Ga0207697_104579771	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MRIIRECRMRAVILIELAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFAPN
Ga0207929_10231592	3300025505	Arctic Peat Soil	MRIIRECRMRARILTAIAKDDPEMKNQLLYVAQKWLALAILREQLLANADRKPDKPRPRQ
Ga0207647_103318761	3300025904	Corn Rhizosphere	MQIIRECRMRAAILAELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRARHKLFAPN
Ga0207645_107356431	3300025907	Miscanthus Rhizosphere	SQVGNGTMQIIRECRMRAAILAELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSARN
Ga0207707_103559182	3300025912	Corn Rhizosphere	MQIIRECRMRAAILAELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSARN
Ga0207660_102840552	3300025917	Corn Rhizosphere	MPIIRECRMRAAILAELATDAPEFENQLLYVAKKWLMLANLCEQLTAGADRAAHKLSARN
Ga0207652_112776812	3300025921	Corn Rhizosphere	RAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRAAHKLSARN
Ga0207687_116756782	3300025927	Miscanthus Rhizosphere	MRIIRECRMRAVILIELAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADR
Ga0207701_101523665	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRARHKLFAPN
Ga0207670_108979402	3300025936	Switchgrass Rhizosphere	MQIVSECRLRAAILTELAKDTPEPELESQLLHVAQDWLTLASLREQLIADAQLGGPTIRL
Ga0207661_116984582	3300025944	Corn Rhizosphere	MQIVRECRLRAAILTELAKDTPEPELESQLLYVAQDWLTLASLREQLIADAQLGGPTIRL
Ga0207712_103431592	3300025961	Switchgrass Rhizosphere	TMQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSAR
Ga0207712_116325951	3300025961	Switchgrass Rhizosphere	MQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGAD
Ga0207708_106006162	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MPIIRECRMRAAILAELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRAAHKLSARN
Ga0256821_10312951	3300026452	Sediment	MQIIRECRMRAAILTGIAKDAPELENQLLYVANKWLTLAILRGQLNAGADRVAHKLPARRPVGRGPGSVVGRY
Ga0210002_10102261	3300027617	Arabidopsis Thaliana Rhizosphere	CRMRAAILIGLAKDAPELENQLVYVAQKWLTLAIIAEQLSSGADRARHKLFAPN
Ga0209983_10757061	3300027665	Arabidopsis Thaliana Rhizosphere	MQIIRECRMRAAILTELATDAPALEDQLLYVAKKWVMLAILCEQLTAGADRAAHELSARN
Ga0209966_11632041	3300027695	Arabidopsis Thaliana Rhizosphere	MQIIRECRMRAAILTELATDASALEDQLLYVAKKWVMLAILCEQLTAGADRAAHKLSARN
Ga0209814_100032211	3300027873	Populus Rhizosphere	MRAAILTGLAKDAPELEFQLLYVAKEYLALAMLREQLNADADRRAHKLPARH
Ga0209481_107378572	3300027880	Populus Rhizosphere	MQIIRECRMRAAILTGLAKDAPELEFQLLYVAKEYLALAMLREQLNADADRRAHKLPARH
Ga0209068_100290762	3300027894	Watersheds	VQIIRECRMRATILIELAKDAPELEDQLLYVAKKWLTLAILSEQLNAGANLAANKLSARH
Ga0209068_102892463	3300027894	Watersheds	MQIIHECRMRAVILTELAKDAPEFENQLLYLAEKWLTLAIIGEQLNVDVDRAAHKLSTGH
Ga0209069_100422281	3300027915	Watersheds	TQIIRECRMRAAILTGLTKDAPELEIQLLYVAKIWLTLAILREQLNAAADRAAHKLPRRH
Ga0209069_106128482	3300027915	Watersheds	MQIICECRIRAAILTELAKDSPEFENQLLYVAKKWLTLAIIREQLIAGADRAAHKLSARN
(restricted) Ga0255311_10413442	3300031150	Sandy Soil	MRIIRECRMRAAILIEFAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFAPN
(restricted) Ga0255310_100193302	3300031197	Sandy Soil	MQIIRECRMRAAILIGLAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFASN
(restricted) Ga0255312_11243871	3300031248	Sandy Soil	MRIIRECRMRAAILIGLAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFASN
Ga0170820_161854862	3300031446	Forest Soil	MQIVRECRMRAAILTGIAKDAPEVESQLLYLAQKWLTLAVLREQLINAHKDQLPDDPPSL
Ga0310884_100065308	3300031944	Soil	SSCVSQVGNGTMQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSARN
Ga0326726_100434965	3300033433	Peat Soil	MQIIRECRMRAVILTELAKDAPEFESQLLYVAEKWLILAILSEQLNADTDRAAHKLPALH
Ga0326726_100605884	3300033433	Peat Soil	MQIIRECRMRAVILTELAKDDPEFESQLLYLAQKWLTLAITREQLIAGTDRAHVCF
Ga0326726_102042903	3300033433	Peat Soil	MQIICECRIRAAILTELAKDAPEFENQLLYVAKKWLTLAIISEQLIAGADRAAHKLSARN
Ga0326726_107113821	3300033433	Peat Soil	MQLIRECWMRSVILTELAKDAPEFESQLLYVAKKWLTLAILSEQLSAGADTAALKSLARH
Ga0326723_0023037_13_171	3300034090	Peat Soil	MRATILTGIAKDAPELENQLLYVAEEWLALAALREQLNIGADRAAHKLPAPN
Ga0326723_0255523_604_762	3300034090	Peat Soil	MRAVILTELAKDAPEFANQLLYLAENWLTLAIIGEQLNVDVDRAAHKLSTRH