Metagenome / Metatranscriptome Family F099625

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099625
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	64 residues
Representative Sequence	MFGDYLGGRAARRFAGTLLRLLVTGFLVLAASNNCRMPCSNSPTAFSKAPSCPTRTIAMD
Number of Associated Samples	92
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	70.00 %
% of genes near scaffold ends (potentially truncated)	95.15 %
% of genes from short scaffolds (< 2000 bps)	91.26 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.175 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (13.592 % of family members)
Environment Ontology (ENVO)	Unclassified (21.359 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.573 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 37.50% β-sheet: 0.00% Coil/Unstructured: 62.50%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF01042	Ribonuc_L-PSP	10.68
PF14833	NAD_binding_11	7.77
PF02567	PhzC-PhzF	5.83
PF00291	PALP	2.91
PF02633	Creatininase	1.94
PF00144	Beta-lactamase	1.94
PF02687	FtsX	1.94
PF13508	Acetyltransf_7	0.97
PF03061	4HBT	0.97
PF13424	TPR_12	0.97
PF13649	Methyltransf_25	0.97
PF12276	DUF3617	0.97
PF13676	TIR_2	0.97
PF13340	DUF4096	0.97
PF03466	LysR_substrate	0.97
PF03807	F420_oxidored	0.97
PF14588	YjgF_endoribonc	0.97
PF02452	PemK_toxin	0.97
PF00239	Resolvase	0.97
PF00563	EAL	0.97
PF14559	TPR_19	0.97
PF00271	Helicase_C	0.97
PF07238	PilZ	0.97
PF00011	HSP20	0.97
PF13570	PQQ_3	0.97
PF00583	Acetyltransf_1	0.97
PF01177	Asp_Glu_race	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	10.68
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	5.83
COG1402	Creatinine amidohydrolase/Fe(II)-dependent FAPy formamide hydrolase (riboflavin and F420 biosynthesis)	Coenzyme transport and metabolism [H]	1.94
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.94
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.94
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.94
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.97
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.97
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.97
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.97
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.97
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.97
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.17 %
Unclassified	root	N/A	5.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.17 %
Unclassified	root	N/A	5.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.17 %
Unclassified	root	N/A	5.83 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	30.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	14.56 %
Unclassified	root	N/A	5.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.97 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	30.10 %
Unclassified	root	N/A	5.83 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.97 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	29.13 %
Unclassified	root	N/A	5.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	29.13 %
Unclassified	root	N/A	5.83 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	29.13 %
Unclassified	root	N/A	5.83 %
Hypericibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter	1.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	29.13 %
Unclassified	root	N/A	5.83 %
Hypericibacter adhaerens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter adhaerens	1.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004114\|Ga0062593_100586266	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300005332\|Ga0066388_103160826	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	841	Open in IMG/M
3300005332\|Ga0066388_104149955	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300005367\|Ga0070667_101376534	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300005440\|Ga0070705_100796179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter adhaerens	752	Open in IMG/M
3300005560\|Ga0066670_10839567	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	557	Open in IMG/M
3300005569\|Ga0066705_10635711	All Organisms → cellular organisms → Bacteria → Proteobacteria	650	Open in IMG/M
3300005576\|Ga0066708_10209672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1225	Open in IMG/M
3300005576\|Ga0066708_10445423	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	831	Open in IMG/M
3300005586\|Ga0066691_10503636	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	723	Open in IMG/M
3300005598\|Ga0066706_11103285	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	606	Open in IMG/M
3300005834\|Ga0068851_10626436	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300005843\|Ga0068860_100318812	All Organisms → cellular organisms → Bacteria	1525	Open in IMG/M
3300006041\|Ga0075023_100496071	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	549	Open in IMG/M
3300006175\|Ga0070712_101657133	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300006581\|Ga0074048_12664310	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300006794\|Ga0066658_10683081	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	565	Open in IMG/M
3300006797\|Ga0066659_10633085	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	870	Open in IMG/M
3300006797\|Ga0066659_11154063	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300006800\|Ga0066660_10953574	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	694	Open in IMG/M
3300006854\|Ga0075425_100281326	All Organisms → cellular organisms → Bacteria	1915	Open in IMG/M
3300006854\|Ga0075425_101671734	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300007255\|Ga0099791_10113314	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300009177\|Ga0105248_10186687	All Organisms → cellular organisms → Bacteria → Proteobacteria	2336	Open in IMG/M
3300010043\|Ga0126380_11122110	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	672	Open in IMG/M
3300010047\|Ga0126382_10615248	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	896	Open in IMG/M
3300010048\|Ga0126373_11650928	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300010323\|Ga0134086_10093302	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300010337\|Ga0134062_10003885	All Organisms → cellular organisms → Bacteria → Proteobacteria	5280	Open in IMG/M
3300010366\|Ga0126379_12108781	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	665	Open in IMG/M
3300010373\|Ga0134128_12995025	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300010376\|Ga0126381_101388755	All Organisms → cellular organisms → Bacteria → Proteobacteria	1015	Open in IMG/M
3300011119\|Ga0105246_11369564	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300012189\|Ga0137388_10785641	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300012200\|Ga0137382_10308905	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1104	Open in IMG/M
3300012925\|Ga0137419_11159725	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	646	Open in IMG/M
3300012929\|Ga0137404_11702878	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300012930\|Ga0137407_11476376	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	647	Open in IMG/M
3300012930\|Ga0137407_11861879	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300012977\|Ga0134087_10693990	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	539	Open in IMG/M
3300012989\|Ga0164305_12178426	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	510	Open in IMG/M
3300014159\|Ga0181530_10311823	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300014162\|Ga0181538_10328067	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300014262\|Ga0075301_1113934	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300014497\|Ga0182008_10960266	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300014501\|Ga0182024_12634028	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300014655\|Ga0181516_10510276	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	617	Open in IMG/M
3300015262\|Ga0182007_10410699	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300015372\|Ga0132256_103013389	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	566	Open in IMG/M
3300015374\|Ga0132255_100543545	All Organisms → cellular organisms → Bacteria	1712	Open in IMG/M
3300015374\|Ga0132255_100624267	All Organisms → cellular organisms → Bacteria	1595	Open in IMG/M
3300015374\|Ga0132255_105085483	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300016387\|Ga0182040_10652874	Not Available	856	Open in IMG/M
3300017948\|Ga0187847_10443723	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	716	Open in IMG/M
3300017974\|Ga0187777_11417019	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	513	Open in IMG/M
3300018042\|Ga0187871_10106959	Not Available	1608	Open in IMG/M
3300018046\|Ga0187851_10890902	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300021170\|Ga0210400_10334915	All Organisms → cellular organisms → Bacteria	1245	Open in IMG/M
3300021420\|Ga0210394_10125897	Not Available	2220	Open in IMG/M
3300021420\|Ga0210394_10436673	All Organisms → cellular organisms → Bacteria	1152	Open in IMG/M
3300021432\|Ga0210384_11392157	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300021478\|Ga0210402_10736745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	910	Open in IMG/M
3300022840\|Ga0224549_1056264	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	536	Open in IMG/M
3300024179\|Ga0247695_1048570	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300024254\|Ga0247661_1055444	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300025321\|Ga0207656_10454368	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300025900\|Ga0207710_10045941	All Organisms → cellular organisms → Bacteria → Proteobacteria	1949	Open in IMG/M
3300025911\|Ga0207654_10285352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter adhaerens	1118	Open in IMG/M
3300025915\|Ga0207693_10625598	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300025940\|Ga0207691_10935655	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300025941\|Ga0207711_11097833	All Organisms → cellular organisms → Bacteria → Proteobacteria	736	Open in IMG/M
3300025960\|Ga0207651_11374380	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300026328\|Ga0209802_1288858	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	545	Open in IMG/M
3300026523\|Ga0209808_1208830	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300026552\|Ga0209577_10033434	All Organisms → cellular organisms → Bacteria	4453	Open in IMG/M
3300026552\|Ga0209577_10873012	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	504	Open in IMG/M
3300026557\|Ga0179587_10427249	All Organisms → cellular organisms → Bacteria → Proteobacteria	865	Open in IMG/M
3300027903\|Ga0209488_10165694	All Organisms → cellular organisms → Bacteria → Proteobacteria	1669	Open in IMG/M
3300027915\|Ga0209069_10834292	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300028746\|Ga0302233_10213427	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	736	Open in IMG/M
3300028780\|Ga0302225_10442976	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	608	Open in IMG/M
3300029920\|Ga0302142_1179559	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	646	Open in IMG/M
3300029944\|Ga0311352_11456190	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300030399\|Ga0311353_11360101	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300030524\|Ga0311357_10266757	All Organisms → cellular organisms → Bacteria	1651	Open in IMG/M
3300030524\|Ga0311357_11403429	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300030618\|Ga0311354_10284850	All Organisms → cellular organisms → Bacteria	1717	Open in IMG/M
3300030844\|Ga0075377_11736825	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1579	Open in IMG/M
3300031028\|Ga0302180_10071117	All Organisms → cellular organisms → Bacteria → Proteobacteria	2047	Open in IMG/M
3300031525\|Ga0302326_12645165	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	625	Open in IMG/M
3300031720\|Ga0307469_12021406	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	560	Open in IMG/M
3300031754\|Ga0307475_11130072	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300031788\|Ga0302319_10690423	All Organisms → cellular organisms → Bacteria → Proteobacteria	1037	Open in IMG/M
3300031858\|Ga0310892_10314985	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
3300031910\|Ga0306923_12322340	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300031913\|Ga0310891_10344304	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	534	Open in IMG/M
3300031942\|Ga0310916_11667543	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300032180\|Ga0307471_100862854	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1072	Open in IMG/M
3300032180\|Ga0307471_102767149	All Organisms → cellular organisms → Bacteria → Proteobacteria	622	Open in IMG/M
3300032261\|Ga0306920_100025291	All Organisms → cellular organisms → Bacteria → Proteobacteria	8378	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.55%
Host-Associated	Host-Associated	18.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.82%
Plants	Host-Associated → Plants	18.45%
Aquatic	Environmental → Aquatic	8.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.62%
Peat	Environmental → Terrestrial → Peat	11.65%
Freshwater	Environmental → Aquatic → Freshwater	6.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.83%
Sediment	Environmental → Aquatic → Sediment	1.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.40%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	11.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.74%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.80%
Loam	Environmental → Terrestrial → Soil → Loam	4.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	11.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.74%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.97%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.59%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.71%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	8.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.94%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.97%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.97%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.97%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014262	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D1	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014655	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG	Environmental	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022840	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5	Environmental	Open in IMG/M
3300024178	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35	Environmental	Open in IMG/M
3300024179	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36	Environmental	Open in IMG/M
3300024254	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK02	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300029920	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_3	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030844	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062593_1005862665	3300004114	Soil	MFGDYLGGRAARRFAGTLLRLLVTGFLVLAASNNCRMPCSNSPTAFSKAPSCPTRTIAMDGC
Ga0066388_1031608263	3300005332	Tropical Forest Soil	MFGDYLGGRAARRFAGTLLRLLVTGFFVLAASNNCRMPCSNSPTAFSKAPSCPTRTIAMD
Ga0066388_1041499552	3300005332	Tropical Forest Soil	MLRPYLGGRAARRFAGTLLRLLVTGFLVLAASNNCRMPCSNRPTAFSKTPSCPTRTIAMDGCRANDGGR
Ga0070667_1013765342	3300005367	Switchgrass Rhizosphere	MFGDYLGGRAARRFAGTLLRLLVTGFLVLAASNNCRMPCSNSPTAFSKAPSCPTRTIAMDGCRANDGGRKTFTVSVE*
Ga0070705_1007961792	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MSGNYLGGRAARRFAGTLLRLFVTGFLVLAASNSCRIPCSNSPTAFSKAPSCPIRTIAMDGRRSNDGGRNTFT
Ga0066670_108395671	3300005560	Soil	MSEDYLGRRAARRFAGTPLWCLVMGFVVSAASNNCRNPCANSSTAFPKAPSCATRTIATDRCSSNDG
Ga0066705_106357111	3300005569	Soil	MLGDYLRGRAFRRFAGTPLRCLVTGFLVSAASNNCRNPCANSSTAFPKAPSCPTRTIATD
Ga0066708_102096723	3300005576	Soil	MSGDYLGRRAARRFAGTPLWCLVMGFVVSAASNNCRNPCANSSTAFPKAPSCATRTIATDRCSSNDGGC
Ga0066708_104454231	3300005576	Soil	MSEDYLGRRAARRFAGTPLWCLVMGFVVSAASNNCRNPCANSSTAFPKAPSCATRTIATDRCSSNDGGC
Ga0066691_105036361	3300005586	Soil	MSGDYLGRRAARRFAGTPLWCFVMGFVVSAASNNCRNPCANSSTAFPKAPSCATRTIATDRCS
Ga0066706_111032852	3300005598	Soil	MLGDYLRGRASRRFAGTPLRCLVTGFVVSAASNNCRNPCANSSTAFPKAPSSPTRTIAT
Ga0068851_106264361	3300005834	Corn Rhizosphere	MFGDYLGGRAARRFAGTLLRLLVTGFLVLAASNNCRMPCSNSPTAFSKAPSCPTRTIAMDGCR
Ga0068860_1003188121	3300005843	Switchgrass Rhizosphere	MFADYLGGRAARRFAGTLRRLLVTGLLVLAASNNCRMPCSNSSTAFSKAPSCPTRTIAMDGCRSNDGGRNTF
Ga0075023_1004960711	3300006041	Watersheds	MSGDYLGGRAGRRFAGTLLRLLVTGFLVLAASNNCRMPFSNSPTAFSKAPSCPTRTIATDGCRSNDGGRN
Ga0070712_1016571331	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRRATTRSMGRGTYLGGRAARRFAGTLLRLFVTGFLVLAASNNCRMPCSNSPTAFSKAPSCPTRTI
Ga0074048_126643102	3300006581	Soil	MSGDYLGGRAARRFAGTPLRCLVAGFLVSAASNRCRNPCANCSTAFPKAPSCATRTIATDRCRSNDGGRN
Ga0066658_106830811	3300006794	Soil	MSEDYLGRRAARRFAGTPLWCLVMGFVVSAASNNCRNPCANSSTAFPKAPSCATRTIATDRCSSNDGGCN
Ga0066659_106330852	3300006797	Soil	MSGDYLGCRAARRFAGTPLWCLVMGFVVSAASNNCRNPCANSSTVFPKAPSCATRTIATDRCSS
Ga0066659_111540631	3300006797	Soil	MSGDYLGRRAARRFAGTPLWCFVMGFVVSAASNNCRNPCANSSTAFPKAPSCATRTIATDRCSS
Ga0066660_109535741	3300006800	Soil	MSGDYLGCRAARRFAGTPLWCLVMGFVVSAASNNCRNPCANSSTVFPKAPSCATRTIATD
Ga0075425_1002813261	3300006854	Populus Rhizosphere	MFADYLGGRAARRFAGTLRRLLVTGFLVLAASNNCRMPCSNSSTAFSKAPSCPTR
Ga0075425_1016717341	3300006854	Populus Rhizosphere	MHYLGGRAGRRFAGSLLRLLITGFLVLAASNSCRMPCSNSPTAFSKAPSCPI
Ga0099791_101133141	3300007255	Vadose Zone Soil	MSGDYLGGRAARRFAGTPLRCLVTGFVVSAASNNCRNPCANSSTAFPKAPSCPT
Ga0105248_101866871	3300009177	Switchgrass Rhizosphere	MHYLGDRAGRRFAGTLLRLLVMGFLVLAASNNCRMLCSNSPTAFSKAPSCPTRTIATDGCRSNDGGRSTFTVSIE*
Ga0126380_111221102	3300010043	Tropical Forest Soil	MAAESDASLGDYSRGRAFRRFAGTPLRLLVTDFVVLAASNRCRMRCSNSSTALSKAPSCPTRTIATDKCNSNDGGRN
Ga0126382_106152481	3300010047	Tropical Forest Soil	MFGDYLGGRTTRRFAGTRLRLLVTGLLVLAASNNCRMPCSNSPIAFSKAPSCPTRTIAM
Ga0126373_116509283	3300010048	Tropical Forest Soil	MRDYLGGRAARRFAGTPLRLLVTGFVVLAASNKCRMPCSNSSTALSKAPSCPTRTIATDK
Ga0134086_100933022	3300010323	Grasslands Soil	MSSRPLSSNKRWDYLGGRAFRRFAGTLLRLLVTGFLVLAASNKCRMPCSNSSTDLSKAPSCPTRTIAMDMRKSNDGGRNTL
Ga0134062_100038851	3300010337	Grasslands Soil	MSEDYLGRRAARRFAGTPLWCLVMGFVVSAASNNCRNPCDNSSTAFPKAPS
Ga0126379_121087811	3300010366	Tropical Forest Soil	MRDYLGGRAARRFVGTPLRCLVTDFVVPAASSNCRNPCSNSSTAFPKAPSCPARTIAT
Ga0134128_129950252	3300010373	Terrestrial Soil	MFADYLGGRAARRFAGTLRRLLVTGFLVLAASNNCRMPCSNSSTAFSKAPSCPTRTIAMDGC
Ga0126381_1013887553	3300010376	Tropical Forest Soil	MYGDYLDRRAARLFARTLLRLLVMGFLVLAASNKCRMPSSNSSTALSKAPSFPTRTI
Ga0105246_113695641	3300011119	Miscanthus Rhizosphere	MSGDYLGGRADRRFAGTLLRLLVTGFLVLAASNNCRMPCSNSPTAFPKAPSWPTRTIA
Ga0137388_107856412	3300012189	Vadose Zone Soil	MTQRKWIERLQQATLGDYLRGRAARRLAGTPLRPLDTGFVVFAAPNKCRMPCSNSSTALSRAPSCPIRVIATDRRKSNDGGRNTS
Ga0137382_103089052	3300012200	Vadose Zone Soil	MSGDYLGGRAARRFAGTPLRCLVTGFLVSAASNSCRNPCANCSTAFPKAP
Ga0137419_111597251	3300012925	Vadose Zone Soil	MSGDYLGRRAARRFAGTPLWCLVMGFVVSAASNNCRNPCANSSTAFPKAPSCATRTIATDRCSSNDGG
Ga0137404_117028782	3300012929	Vadose Zone Soil	MSDDYLGGRAARRFAGTPLRCLVTGFVVLAASNKCRMPCSNSSTALSKAPSCPTRTIATDKGNSNDGGRNTS
Ga0137407_114763762	3300012930	Vadose Zone Soil	MSGDYLGRRAARRFAGTPLWCLVMGFVVSAASNNCRNPCANSSTAFPKAPSCATRTIATDRCSSNDGGCNTFTGSIERFLA
Ga0137407_118618792	3300012930	Vadose Zone Soil	MSPKTAQLQHATSEDYLRGRAARRFAGTPFRCLVTGFLVSAASNNCRNPCANSSTAFPKAPSSPTRTIATDRCRSNDGGRNTF
Ga0134087_106939901	3300012977	Grasslands Soil	MLGDYLRGRAFRRFAGTALRCLVTGFVVSAASNNCRNPCANSSTAFPKAPS
Ga0164305_121784261	3300012989	Soil	MSGDYLGGRAARRFTGTPLRCVVTGFVVSAASNNCRSPCSNSSMAFPKA
Ga0181530_103118233	3300014159	Bog	MYAALSAMSGDYLGRRAARRFARTPLRCLVTDFVVSAASNNCRNPCSNNSTAFPKAPSCA
Ga0181538_103280673	3300014162	Bog	MYAALSAMSGDYLGRRAARRFAGTPLRCLVTDFVVSAASNNCRNPCSNNSTAFP
Ga0075301_11139341	3300014262	Natural And Restored Wetlands	MLWRATDYFGGRAARRFAGTLLRLLVTGFLVLAASNNCRMPCSNSPTAFSKAPS
Ga0182008_109602661	3300014497	Rhizosphere	MFADYFGGRAARRFAGTLRRLLVTGFLVLAASNNCRMPCSNSSTAFSKAPSCPT
Ga0182024_126340281	3300014501	Permafrost	MLGHYLRGRASRRFAGTPLRRLVTGFGVSAASNNCRNPCSNSSTAFPKAP
Ga0181516_105102763	3300014655	Bog	VGRRLEPAMPGDYLRGRASRRFAGTPRRCLVSDFVVSGASNNCRNPCSNSSTAFPNAPSCPARTIATDGCRSNDG
Ga0182007_104106992	3300015262	Rhizosphere	VRADYLRDRDLRRFAGTRLLLLVTDFVVLAASNKCRMPCSNSSTALSKAP
Ga0132256_1030133892	3300015372	Arabidopsis Rhizosphere	MSGDYLGGRAARLFAGTPLRLLVTGFVVLAASNNCRMPCSNSPTALSKAPSCPTRTI
Ga0132255_1005435451	3300015374	Arabidopsis Rhizosphere	MPGNYLGRRAARRFAGTPLRCLVTGFLVSAASNNCRSPCANSSTAFPKA
Ga0132255_1006242671	3300015374	Arabidopsis Rhizosphere	MFGDYLGGRSARRFAGTLLRLRVTGFLVPAASNNCRMPCSNSPTALSKAPSCPTRT
Ga0132255_1050854831	3300015374	Arabidopsis Rhizosphere	MFGDYLGGRAARRFAGTLLRLLVTGFLVLAASNNCRMPCSNSPTAFSKAPSCPTRTIAMDGCRANDGGRKTFTVSVE
Ga0182040_106528742	3300016387	Soil	MRDYRAGRTARRFAGTPRRCLVTGFWVSAASNNCRNPCASSSTAFPKAP
Ga0187879_101880801	3300017946	Peatland	MTCRKWIKRLQQAVLGTYLRDRAFPRFAGTPLRLLVTGFLVLAASSKFRMPCSNSSTALSKAPSCPTRTIAMGMCKSKDGGRNTST
Ga0187847_104437232	3300017948	Peatland	MSGDYLRGRAARRFAGTPLRCLVTAFVVSAASNNCRNQCSNCSTAFPKAPSC
Ga0187777_114170191	3300017974	Tropical Peatland	MRQGRRDFLSGQISVWDYLGERAARRFVGRPLWRLVRGFVVSAASSTCRNRSSNSPTAFPKAPSWPARTIATDGRNSNDGGRNTFTVSIDWF
Ga0187871_101069594	3300018042	Peatland	MLGDYLRGRAFRRFAGTPLRFLDAGFFVLAASNKFRMPCSNSSTALS
Ga0187851_108909021	3300018046	Peatland	MLGDYLRGRAFRRFAGTPLRFLDAGFFVLAASNKFRMPCSNSSTALSKAPSCP
Ga0179596_104622451	3300021086	Vadose Zone Soil	MSGDYLGGRAARRFAGTPLRCLVTGFLVSAASNSCRNPCANCSTAFPK
Ga0210400_103349152	3300021170	Soil	MLGDYLRGRAFRRFAGKPLLLLVTGFLVLAASNKCRMPCSNSSTALSKAPSCPTRTIATDMCKSNDGGRNTSTASR
Ga0210394_101258971	3300021420	Soil	MLGDYLRGRAFRRFAATPLRLPVTGLPVSTASNRCRMPCSNSPTALSKAPSCPTRTIATDMCKLNDGGRNTSTVSRDLFL
Ga0210394_104366732	3300021420	Soil	MTQRKWIERLQQATLGDYLRGRASRRFAGTRLRLLVTGFAVSAASNKCRMPCSNSSTALSRAPSCPIRVIATDRRKSNDG
Ga0210384_113921572	3300021432	Soil	MLGDYLRGRAFRRFAGKPLLLLVTGFLVLAASNKCRMPCSNSSTALSKAPSCPTRTIATDMCKSND
Ga0210402_107367452	3300021478	Soil	MASRPLSLQQAMSGDYLGGRAVRRFAGTPLRCLVKGFGVSAASNNCRNPCSNSSTAFPKAPSCPT
Ga0224549_10562642	3300022840	Soil	MSGDYLRGRAARRFAGTILRCLVAGFGVSAASNNSRNPCSNSSMAFPKAPSCPTRTIATDRCRSNDGGRNTFTESIERFL
Ga0247694_10081304	3300024178	Soil	MIKNKMSLKRAELQQVLSGDYLVVRGARRFAGTPLRCIVTGFVVSAASNNCRNPSSNSSTAFPKAPNCWK
Ga0247695_10485702	3300024179	Soil	MLGDYLCGRAFRRFAGTPLRLLVAGFVVLAASNKCQMPCSNSSTALSKAPSCPTRTIATDMCKSNDGGRNTSTVSRELFPVT
Ga0247661_10554441	3300024254	Soil	MSGDYLGSRAARRFAGTPLRCLVTGFLVSAASNKCLMPYSNSSTALSRAPSCPIRVIATD
Ga0207656_104543682	3300025321	Corn Rhizosphere	MFGDYLGGRAARRFAGTLLRLLVTGFLVLAASNNCRMPCSNSPTAFSKAPSCPTRTIAMD
Ga0207710_100459414	3300025900	Switchgrass Rhizosphere	MHYLGDRAGRRFAGTLLRLLVMGFLVLAASNNCRMLCSNSPTAFSKAPSCPTRTIATDGCRSNDGGRSTFTVSIE
Ga0207654_102853522	3300025911	Corn Rhizosphere	MFADYLGGRAARRFAGTLRRLLVTGLLVLAASNNCRMPCSNSSTAFSKAPSCPTRTIAMDGCRSNDGGR
Ga0207693_106255982	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTGNPTYLGGRAARRFAGTLLRLFVTGFLVLAASNNCRMPCSNSPTAFSRAPSCPIRTIAMDGRRSNDGGRNTFTVSN
Ga0207691_109356551	3300025940	Miscanthus Rhizosphere	MFADYLGGRAARRFAGTLRRLLVTGFLVLAASNNCRMPCSNSSTAFSKAPSCPTRTIAMDGCRSNDGGRNTFTVS
Ga0207711_110978332	3300025941	Switchgrass Rhizosphere	MFADYLGGRAARRFAGTLRRLLVTGLLVLAASNNCRMPCSNSSTAFSKAPSCPTRTIAMDGCRSNDGG
Ga0207651_113743802	3300025960	Switchgrass Rhizosphere	MFGDYLGGRAARRFAGTLLRLLVTGFLVLAASNNCRMPCSNSPTAFSKAPSCPTRTIAMDGCRANDG
Ga0209802_12888581	3300026328	Soil	MLGDYLRGRASRRFAGTPLRCLVTGFVVSAASNNCRNPCANSSTAFPKAP
Ga0209808_12088302	3300026523	Soil	MLGDYLRGRAFRRFAGTPLRCLVTGFVVSAASNNCRNPCANSSTAFPKAPSCPTRTI
Ga0209577_100334347	3300026552	Soil	MSGDYLGCRAARRFAGTPLWCLVMGFVVSAASNNCRNPCANSSTVFPKAPSCATRTIATDRCSSND
Ga0209577_108730121	3300026552	Soil	MSGDYLGGRAARRFAGATLQCLVTGFLVSAASNNCRNPCANSSTAFPKA
Ga0179587_104272491	3300026557	Vadose Zone Soil	MSGDYLGGRAARRFAGTPLRCLVTGFLVSAASNSCRNPCANCSTAFPKAPSCPTRTIATDRCRSNDG
Ga0209488_101656943	3300027903	Vadose Zone Soil	VLGDYLRGRAFRRLAGTRLRLLVTGFVVSAASNKCRMPCSNSSTAFSKAPSCPTRTIATDICKSNDGGRNTS
Ga0209069_108342922	3300027915	Watersheds	MSGNYLGGRAARRFAGTLLRLLVMGFLVLAASNNCRMPCSNSPTAFSKAPSCPTRTIAMDGRR
Ga0302233_102134271	3300028746	Palsa	VVGDYLLGRAFRRFAGTSLRLLITGFVVSAASNKCRMPCSNSSTALSKAPSCPTRTIATDMCKSNDGGRNTST
Ga0302225_104429761	3300028780	Palsa	VVGDYLLGRAFRRFAGISLRLLITCFVVSAASNKCRMPCSNSSTALSKAPSCPTRTIATDMCKSKDGGRNTATVSREL
Ga0302142_11795591	3300029920	Bog	VVGDYLLGRAFRRFAGTSLRLLITGFVVSVASNKCRMPCSNSSTALSKAPSCPTRTIATDMCKSNDGGRNT
Ga0311352_114561902	3300029944	Palsa	VLVDYLRGRAFRRFAGTPLRLLVTGFLVLAASNKCRTPCSNIPTALSKAPSCPTRTIAT
Ga0311353_113601011	3300030399	Palsa	MSGDYLGARAARRFAGTPLRCVVTGFVVSAALNNCRNSCSNSSTAFPKA
Ga0311357_102667571	3300030524	Palsa	MSGDYLGRRAARRFAGTPLRRLVTGFVVSAASNNCRNPCANSSTAFPKAPSC
Ga0311357_114034291	3300030524	Palsa	VLVDYLRGRAFRRFAGTPLLLLVTGSLVLAASNKCRMPCSNSPTALSRAPSCPTRTIATDMCKSND
Ga0311354_102848503	3300030618	Palsa	MSGDYLGRRAARRFAGTPLRRLVTGFVVSAASNNCRNPCANSSTAFPKAPSCPTRTIATDRCRSNDGGRNTF
Ga0075377_117368253	3300030844	Soil	MSGDYLGGRAARRFAGTPLRCLVTGFLVSAASNNCRNPCANRSRAFPKAPSCPTRTIATDRCR
Ga0302180_100711173	3300031028	Palsa	MTAQFQQAMSGDYLGGRAARRFAGPPLRCLVTGFVVSAASNNCRNSCSNSSTAFPKAPSCATRTIA
Ga0302326_126451652	3300031525	Palsa	MSGDYLRGRAARRFAGTILRCLVAGFGVSAASNNSRNPCSNSSMAFPKAPSCPTRTIATDRCRSNDGGRNTFTESIERFLA
Ga0307469_120214062	3300031720	Hardwood Forest Soil	MSGNYLGARAARRFAGTLLRLFVTGFLVLAASNNCRMPCSNSPTAFSKAPS
Ga0307475_111300722	3300031754	Hardwood Forest Soil	MFGDYLRGRAFRRFAGTLLRLLVTAFLVLAASNKCRMPCSNSPTALSKAPSCPTR
Ga0302319_106904231	3300031788	Bog	MLDRQKDAEIVEREQAMSEDYFGSLAARRFAGAPRRCLVTGPRVSVASNNCRNPCSSSSTAFPKA
Ga0310892_103149854	3300031858	Soil	MSGDYLGGRAARLFAGTPLRLLVTGFVVLAASNNCRMPCSNSPTALSKAPSCPTRTIAMDGCRSKDGGRNTF
Ga0306923_123223401	3300031910	Soil	VMSGDYLRGRAFRRLAGTLLRFLFTAFLVLAASNKCRMPCSNSSTALSKA
Ga0310891_103443041	3300031913	Soil	MSGDYLGGRAGRRFAGTLLRLLVTGFLVLAVSNNCRMPCSNSPTAFSKAPSCPTR
Ga0310916_116675432	3300031942	Soil	MQRATLGDYLRGRAFRRFAGWRLRLLVTDFLVSAASNKRRMPCFSSSTALSRAPSCPTRTIAMDMRKSNDGGRNTFTVSRALL
Ga0307471_1008628541	3300032180	Hardwood Forest Soil	MSGDYLGRRAARRFAGTPLWCLVTGFVVSAASNNCRNPCANSSTAFPKAPSCATRTI
Ga0307471_1027671492	3300032180	Hardwood Forest Soil	MSGDYLGRRAVRRFAGTRWCLVTGFVVSAASNNCRNPCANSSTAFPKAPSCATRTIATDR
Ga0306920_1000252917	3300032261	Soil	MRDYRAGRTARRFAGTPRRCLVTGFWVSAASNNCRNPCASSSTAFPKAPSCPARTIATDRRRSNDGGRKTFTGLKG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099625

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences