Metagenome / Metatranscriptome Family F099590

Overview

Basic Information

• Family ID: F099590
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 103
• Average Sequence Length: 53 residues
• Representative Sequence: ETLKDQLCKAGKCPTYTVFKDHSHISEVMSPDTADDSVTGPILKWMKSVK
• Number of Associated Samples: 90
• Number of Associated Scaffolds: 103

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 95.15 %
• % of genes from short scaffolds (< 2000 bps): 93.20 %
• Associated GOLD sequencing projects: 86
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (84.466 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (8.738 % of family members)
• Environment Ontology (ENVO): Unclassified (24.272 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (42.718 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 20.51%
  β-sheet: 0.00%
  Coil/Unstructured: 79.49%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00903	Glyoxalase	5.83
PF01436	NHL	5.83
PF01738	DLH	4.85
PF09363	XFP_C	4.85
PF01019	G_glu_transpept	2.91
PF08240	ADH_N	2.91
PF04014	MazE_antitoxin	1.94
PF00753	Lactamase_B	1.94
PF06325	PrmA	1.94
PF02567	PhzC-PhzF	1.94

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	2.91
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	1.94
COG3897	Protein N-terminal and lysine N-methylase, NNT1/EFM7 family	Posttranslational modification, protein turnover, chaperones [O]	1.94
COG2890	Methylase of polypeptide chain release factors	Translation, ribosomal structure and biogenesis [J]	1.94
COG2264	Ribosomal protein L11 methylase PrmA	Translation, ribosomal structure and biogenesis [J]	1.94
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.97
COG0496	Broad specificity polyphosphatase and 5'/3'-nucleotidase SurE	Replication, recombination and repair [L]	0.97
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	0.97
COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	Cell cycle control, cell division, chromosome partitioning [D]	0.97
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.97

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.47 %
Unclassified	root	N/A	15.53 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.47 %
Unclassified	root	N/A	15.53 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.47 %
Unclassified	root	N/A	15.53 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	41.75 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.85 %
Unclassified	root	N/A	15.53 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.97 %
Unclassified	root	N/A	15.53 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	29.13 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	0.97 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	28.16 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.97 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2.91 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.97 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.97 %
Unclassified	root	N/A	15.53 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	28.16 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.97 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.97 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.97 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.97 %
Unclassified	root	N/A	15.53 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	28.16 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.97 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.97 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.97 %
Occallatibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter	0.97 %
Unclassified	root	N/A	15.53 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	0.97 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	28.16 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.97 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.97 %
Occallatibacter riparius	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	0.97 %
Unclassified	root	N/A	15.53 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.97 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	28.16 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.97 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	0.97 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.97 %
Occallatibacter riparius	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	0.97 %
Unclassified	root	N/A	15.53 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000559|F14TC_104903471	All Organisms → cellular organisms → Bacteria	826
3300004082|Ga0062384_100111316	All Organisms → cellular organisms → Bacteria	1485
3300005184|Ga0066671_10449280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	827
3300005290|Ga0065712_10024802	All Organisms → cellular organisms → Bacteria	1107
3300005328|Ga0070676_11428651	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531
3300005332|Ga0066388_105394196	All Organisms → cellular organisms → Bacteria	648
3300005340|Ga0070689_100023079	All Organisms → cellular organisms → Bacteria	4654
3300005340|Ga0070689_100576162	All Organisms → cellular organisms → Bacteria	972
3300005436|Ga0070713_101929792	All Organisms → cellular organisms → Bacteria	573
3300005564|Ga0070664_101147772	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	732

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.90%
Host-Associated	Host-Associated	30.10%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	11.65%
Plants	Host-Associated → Plants	30.10%
Terrestrial	Environmental → Terrestrial	58.25%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	4.85%
Marine	Environmental → Aquatic → Marine	0.97%
Peat	Environmental → Terrestrial → Peat	3.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.42%
Roots	Host-Associated → Plants → Roots	0.97%
Sediment	Environmental → Aquatic → Sediment	5.83%
Soil	Environmental → Terrestrial → Soil	54.37%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.91%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.97%
Loam	Environmental → Terrestrial → Soil → Loam	17.48%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.97%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.97%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.53%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.94%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.77%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.91%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.97%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.97%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.53%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.97%

Habitat

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.97%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.94%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.88%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.94%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.97%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.97%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.97%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.83%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.97%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.97%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.91%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1049034712	3300000559	Soil	LDPPNIYAFDETLKNALCNAGRCPTSAFYKDHSRVSLVFSPNTADNSVTGPILKWMKGVK
Ga0062384_1001113163	3300004082	Bog Forest Soil	ISVAELDPPNIIGFAETLRDELKKANRNVTYSVYKDHSHISEVMSPNTADKSVTGRIVKWMKSVK*
Ga0066671_104492801	3300005184	Soil	LKDQLCKAGHCPAYLVFKDHSHISEVMSPNTADDSVTGPILKWIKSVK*
Ga0065712_100248021	3300005290	Miscanthus Rhizosphere	DEALKNALCKAGRCPTSAVFKDHSHVSLVFSPNTRDDSVTGPILKWMKSIK*
Ga0070676_114286512	3300005328	Miscanthus Rhizosphere	FAETLRDELCKAGHCATYAVYKDHSHISEVMSPNTADDSVTGSILKWMKSVK*
Ga0066388_1053941962	3300005332	Tropical Forest Soil	NILSFDLALKNALCKAGRCPTTAELIKDHSHVSLVFSPNTSDDSVTGPILKWMKSVK*
Ga0070689_1000230791	3300005340	Switchgrass Rhizosphere	IGFAETLRDQLCKAGRCATYVMYKDHSHISEVMSPDTADTSVTGPILKWMKGVK*
Ga0070689_1005761621	3300005340	Switchgrass Rhizosphere	LCKAGRCPTSAVFKDHSHVSLVFSPNTRDDSVTGPILKWMKSIK*
Ga0070713_1019297922	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LKSELCKAGACPTYMVYKDHSHISEVLSPNTADTSVTGPILKWMKSVK*
Ga0070664_1011477722	3300005564	Corn Rhizosphere	IDSANIWVFDEALKNALCKTGRCPTSAVFKDHSHVSLVFSPNTKDDSVTGPILKWMKSVK
Ga0070764_109194341	3300005712	Soil	PNIIGFAETLRDELKKANRNVTFAVYKDHSHISEVMSPDTADQSVTGPILKWMKSVK*
Ga0075024_1002448571	3300006047	Watersheds	RADRSPARPLQLHKPGIIAFAETLKDQLCKAVHCPEYLVFKDHIHISEVMSPNTADDSVTGPILRWIKNIK*
Ga0075017_1006140241	3300006059	Watersheds	PNIIGFAETLKSELCKAGDCPTYMVYKDHSHISEVMSPDTKDTSVTSPILKWIKSVK*
Ga0070765_1005052311	3300006176	Soil	AETLRDQLAKGGHAPTYVVYKDHSHISEVMSPDTADDSVTGPILKWIKSVK*
Ga0070765_1007995412	3300006176	Soil	FAKTLKDEICKAGKTCPTYLVFKDHSHISQVLSPDTADTSVTGPILNWMKTVK*
Ga0097621_1007737641	3300006237	Miscanthus Rhizosphere	GELDLPGITAFHEVLKEQLCMVNHCPTVMVFKDHSHVSEVFSPNTADDSVTGPILKWMKSAKK*
Ga0075021_110221392	3300006354	Watersheds	LCKAGHCAVYAVYKDHSHISEVMSPDTKDTSVTSPILKWIKSVK*
Ga0066653_101722323	3300006791	Soil	LKNALCKAGRCPTTGYFKDHSHMSLVFSPNTADTSVTAPILKWMKSIK*
Ga0075421_1001890892	3300006845	Populus Rhizosphere	LKNALCKAGRCPTTTFFMDHSHVSLVFSPNTADDSVTGPILKWMKSVK*
Ga0105240_127323002	3300009093	Corn Rhizosphere	CMANHCPTVMIFKDHSHVSEVFSPNTADDSVTGPILKWMKSAKK*
Ga0105245_106706323	3300009098	Miscanthus Rhizosphere	FAQTLRDELTKAGAKPTFMEFKDHSHISEVMSPDTADTSVTGPILKWIKSVK*
Ga0075418_109887792	3300009100	Populus Rhizosphere	DSANIWVFDEALKNALCKAGRCATSMVFKDHSHVSLVFSPNTADDSVTGPILKWMKSVK*
Ga0075418_111095962	3300009100	Populus Rhizosphere	ETLKNALCKIGRCPTTAFYKDHSHVSLVFSPNTADNSVTAPILEWMKSVQ*
Ga0105247_105769702	3300009101	Switchgrass Rhizosphere	PPNIIVFAETLRDELNKAGAKVTFANFKDHSHISEVMSPNTPDDSVTGPILKWIKDVK*
Ga0105247_106355621	3300009101	Switchgrass Rhizosphere	IGFAETLKSELCKAGECPAYMVYKDHSHISEVMSPDTADDSVTGPILKWIKSVK*
Ga0105243_112201101	3300009148	Miscanthus Rhizosphere	LDLSNIITFATTLQDKLTKAGAKPTFMEFKDHSHISEVMSPDTADTSVTGPILKWMKSVK
Ga0105242_132387792	3300009176	Miscanthus Rhizosphere	FAETLRDKLCEAKHCPQYATFKDHSHISEVLSPNTKDTSVTGPILKWMKSVK*
Ga0116225_10816051	3300009524	Peatlands Soil	AELCKAGRCPTYVVYKDHSHISEVMSPDTADTSVTGPILKWMKSVK*
Ga0116118_10644772	3300009637	Peatland	CKAGQCPTYLVFKDHSHISEVMSPDTADTTVTGPILKWIKSVK*
Ga0126304_112126822	3300010037	Serpentine Soil	KAGTCPMTMIFKDHSHMSAVFSANTADQSVTGPILEWMRALQ*
Ga0126310_112997121	3300010044	Serpentine Soil	SFDEGLKNALCKAGRCPTTGYFKDHSHMSLVFSPNTTDTSVTAPILNWMKCIK*
Ga0126373_131658771	3300010048	Tropical Forest Soil	TLRDELCKAGRCATYTVFKDHSHISEVMSPDTADASVTGPILKWIKSVK*
Ga0126377_131772051	3300010362	Tropical Forest Soil	LCKAGRCPTTAELIKDHSHVSLVFSPNTADDSVTGPILKWMKSVK*
Ga0126379_102554772	3300010366	Tropical Forest Soil	ALKDALCKAGRCPTTAEFIKDHSHVSLVFSPNTADDSVTGPILKWMKSVK*
Ga0126379_117250741	3300010366	Tropical Forest Soil	ELCKANRCPTYTVFKDHSHISEVMSPDTADTSVTGPILKWIKSVK*
Ga0105239_108016951	3300010375	Corn Rhizosphere	VIAFAETLRDQLCKGGHCPTYTLFKDHSHISEVMSPDTKDTSVTGPILKWMKSVK*
Ga0136449_1007789443	3300010379	Peatlands Soil	KDELCKAGHCPTYLELKDHSHVSEVFSPNTADDSVTGPILKWMTGVK*
Ga0134121_114521853	3300010401	Terrestrial Soil	QNIIVFGETLRDELTKAGHPVTFVRMKDHSHISEVMSPNTADDSVTTPILKWMKSVK*
Ga0134123_135923552	3300010403	Terrestrial Soil	ELTKAGAKPTFMNFKDHSHISEVMSPDTADTSVTGPILKWMKGVK*
Ga0150983_107142342	3300011120	Forest Soil	LKIALCKAGRCPATGFFKDHSHMSLVFSPNTADNSVTGPILKWMKSVK*
Ga0150983_116174511	3300011120	Forest Soil	NILAFDYALKNALCKAGRCPTTAELIKDHSHVSLVFSPNTADDSVTGPILKWMKGVK*
Ga0137313_10254072	3300011403	Soil	WVFDEALKNALCKAGRCATTAIFKDHSHVSLVFSPNTADDSVTGPILKWMKSVK*
Ga0137422_10854922	3300011416	Soil	CKAGRCPTSTVFKDHSHVSLVFSPNTADNSVTGPILKWMKSVK*
Ga0137441_11956382	3300011425	Soil	VFDEALKNALCKAGRCPTTAIFKDHSHASLVFSPNTADDSVTGPILKWIKSVK*
Ga0137383_106143322	3300012199	Vadose Zone Soil	EALKNALCKTGKCPATAFFKDHSHVSLVFSPNTADNSVTGPILKWMKSVK*
Ga0157295_104239051	3300012906	Soil	TLRDELTKAGAKPTFINFKDHSHISEVMSPDTADTSVTGPILKWMKSVK*
Ga0157374_121051651	3300013296	Miscanthus Rhizosphere	NIIGFAETLKSELCKAGDCPTYMVYKDHSHISEVLSPDTADTSVTGPILKWIKSVK*
Ga0157378_115420013	3300013297	Miscanthus Rhizosphere	EIDSANIWVFDEALKNALCKAGRCPTSAVFKDHSHVSLVFSPNSPDNSVTGPILKWMKSVK*
Ga0163162_113147911	3300013306	Switchgrass Rhizosphere	GVIAFAETLRDQLCKGGHCPTYVLFKDHSHISEVMSPDTKDNSVTGPILKWMKSVK*
Ga0163162_124556352	3300013306	Switchgrass Rhizosphere	ETFKEQLCKAGKCPVYAVFKDHSHISEVMSPDTPDTSVTGPILKWIKSVK*
Ga0182024_111098771	3300014501	Permafrost	MISVAELDPPNIIGFAETLRDELKKANRNVTYVVYKDHSHISEVMSPDTADKSVSGPILKWMKSVK*
Ga0181525_106472551	3300014654	Bog	PPNIIGFAETLRDELKKANRNVSYVAYKDHSHISEVMSPDTADTSVTGTILKWMKSVK*
Ga0181525_107539261	3300014654	Bog	MISVAELDPPNIIGFAETLRDELKKANRNVTYAVYKGHSHISEVMSPDTADESVTGPILRWMNSVR*
Ga0157379_115892942	3300014968	Switchgrass Rhizosphere	IGFAETLKSELCKAGTCPTYMVYKDHSHISEVMSPDTADTSVTGPILKWMKSVK*
Ga0132258_110166123	3300015371	Arabidopsis Rhizosphere	LKKALCNAGRCPTTAFFKDHSHASVVFSPNTADDSVTGPILKWMKSVK*
Ga0132258_118208501	3300015371	Arabidopsis Rhizosphere	DQLCKAGHCPTYVVFKDHSHISEVMSPNTPDDSVTGPILKWIKDVK*
Ga0132258_127794613	3300015371	Arabidopsis Rhizosphere	IWAFDEALKNALCKAGRCPTSAVFKDHSHVSLVFSPNTADNSVTGPILKWMKTVK*
Ga0132256_1006897781	3300015372	Arabidopsis Rhizosphere	PSIIAFAETLKDQLCKAGHCPMYVVFKDHSHISEVMSPDTADDSVTGPILKWIRSVK*
Ga0132257_1019693232	3300015373	Arabidopsis Rhizosphere	GWGEIDSANIWVFDEGLKNALCKAGRCPTSAVFKDHSHVSLVFSPNTADDSVTGPILKWMKSVK*
Ga0132255_1045791232	3300015374	Arabidopsis Rhizosphere	IWAFDEALKNALCKAGRCPTSAVFKDHSHVSLVFSPNTSDNSVTGPILKWMKTVK*
Ga0132255_1057909842	3300015374	Arabidopsis Rhizosphere	QLCKAGHCPTYVVFKDHSHISEVMSPNTPDDSVTGPILKWIKDVK*
Ga0182041_122051032	3300016294	Soil	GWGELDSSNILSFDEALKSALCKAGRCPTTAELIKDHSHVSLVFSPNTADDSVTGPILKWMKSVK
Ga0182032_110028381	3300016357	Soil	YALKDALCKAGRCPATAELIKDHSHVSLVFSPNTADDSVTGPILKWMKSVK
Ga0187781_113793432	3300017972	Tropical Peatland	RDQLCKAGHCPTYEVYKDHSHISEVMSPDTADTSVTGPILKWIKSVK
Ga0173479_107347592	3300019362	Soil	VFDEALKNALCKTGRCPTSAVFKDHSHVSLVFSPNTKDDSVTGPILKWMKSVK
Ga0210403_108559281	3300020580	Soil	GFAETLKAELCKADRCPSYVVYKDHSHISEVMSPDTADTSVTGPILKWMKSVK
Ga0214196_10245083	3300021132	Freshwater	NTAAFSETLKDELCKAGRCPVYLFNKGHNHFSEVMTADTADASVTGPVLKWMKSVK
Ga0210400_103103244	3300021170	Soil	ETLKDQLCKAGKCPTYTVFKDHSHISEVMSPDTADDSVTGPILKWMKSVK
Ga0210383_106867513	3300021407	Soil	LDSSNILAFDVALKDALCKTGRCPTTAEFIKDHSHVSLVFSPNTADDSVTGPILKWMKSV
Ga0210383_111710701	3300021407	Soil	PGMTEFNEVLKEQLCKVGRCPTVMVSKDQSHISEVMSVNTSDDSVSGPILKWIKSVK
Ga0210391_115395722	3300021433	Soil	LDPPNIIGFAETLRDELKKANRNVTYVEYKDHSHISEVMSPDTADTSVTGTILKWMKSVK
Ga0210392_100517954	3300021475	Soil	DELCKANRCPTYMQFKDHSHISEVMSPDTPDTSVTGPILKWIKSVK
Ga0210402_105464812	3300021478	Soil	LCMVKHCPTVMVFKDHSHVSEVFSPNTADDSVTGPILKWMKSAKK
Ga0242657_12214222	3300022722	Soil	NIVGFAETLRDQLTKGGHAPTYVVYKDHSHISEVMSPDTADTSVTGPILTWIKSVK
Ga0207692_110079851	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	IGFAETLKSELCKAGDCPTYMVYKDHSHISEVMSPDTADTSVTGPILKWIKSVK
Ga0207699_108071911	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	IFLGAGELDLPGMTEFHEILKGQLCMVKNCPTVVVFKDHSHVSEVFSPNTADDSVTGPILKWMKSAKK
Ga0207671_106163362	3300025914	Corn Rhizosphere	IAFAETLRDQLCKGGHCPTYVLFKDHSHISEVMSPDTKDNSVTGPILKWMKSVK
Ga0207660_106253612	3300025917	Corn Rhizosphere	QLCKAGRCPTYLVFKDHSHISEVMSPNTADDSVTGPILKWIKDIK
Ga0207700_108145682	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LPGMTEFHEILKGQLCMVKNCPTVMVFKGHSHVSEVFSPNTADDSVTGPILKWMKSAKK
Ga0207686_115390281	3300025934	Miscanthus Rhizosphere	AETLRDQLCKGGHCPTYVLFKDHSHISEVMSPDTKDNSVTGPILKWMKSVK
Ga0207708_104388821	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	NIWVFDEALKNALCKAGRCPTSAVFKDHSHVSLVFSPNTKDDSVTGPILKWMKSVK
Ga0207698_103997891	3300026142	Corn Rhizosphere	EALKNALCKTGRCPTSAVFKDHSHVSLVFSPNTKDDSVTGPILKWMKSVK
Ga0209221_10678902	3300027609	Forest Soil	MISVAELDPPNIIGFAETLRDELKKANRNVTYVVYKDHSHISEVMSPDTADQSVTGPILKWMKSVK
Ga0209060_105167421	3300027826	Surface Soil	ISFSKTLRDELCKAGNCPMYVEFKDHSHISEVMSPDTADTSVTGPILKWMKSVK
Ga0209403_103634341	3300027839	Marine	DSPNVIVFDEALEDALCEAGRCPTVGIFDDHSHMSLVFAPNTDDDSVTGPILEWMRSVD
Ga0209465_106150391	3300027874	Tropical Forest Soil	LRDELCKANRCPTYTVFKDHSHISEVMSPDTADTSVTGPILKWIKSVK
Ga0209624_100653503	3300027895	Forest Soil	RDELKKATRNVTYVVYKEHSHISEVMSPDTADKSVSGPILEWMKSVK
Ga0311362_111258611	3300029913	Bog	SVAELDPANIIGFAETLRDELKKANRNVTYAVYKDHSHISEVMSPDTADESVTGPILRWMNSVR
Ga0311371_107815503	3300029951	Palsa	MISVAELDPPNIIGFAETLRDELKKANRNVTYAVYKDHSHISEVMSPDTADESVTGPILRWMNSVR
Ga0311355_106021632	3300030580	Palsa	TLRDELKKANRNVTYVAYKDHSHISEVMSPDTADTSVTGTILKWMKSVK
Ga0310039_100284333	3300030706	Peatlands Soil	GFAETLRDELSKGGHSATYTVFKDHSHISEVMSPDTADTSVTGPILKWIKSVK
Ga0265461_139457801	3300030743	Soil	PNIIGFAETLRDELKKANRNVTFVEYKDHSHISEVMSPDTADTSVTGTILKWMKSVK
Ga0308199_10442992	3300031094	Soil	ALCKAGRCPATGFFKDHSHMSLVFSPNTADNSVTGPILKWMKSVK
Ga0265340_102382231	3300031247	Rhizosphere	LKDQLCMVNRCPTVMIFKDHSHVSEVFSPNTADDSVTAPILTWMKSVKK
Ga0302320_104853803	3300031524	Bog	IIAFAGTLKDELCKANRCPTYMEFKDHSHISEVMSPDTADTTVTGPILKWMKSVK
Ga0310686_1024711077	3300031708	Soil	FAETLRDQLTKGGHAPTYVVYKDHSHISEVMSPDTADTSVTGPILKWIKSVK
Ga0310686_1195906801	3300031708	Soil	IIGFAETLRDQLIKGGHAPTYVVYKDHSHISEVMSPDTADTSVTGPILKWIKSVK
Ga0310813_112948961	3300031716	Soil	IWVFDEALKNALCKAGRCPTSAVFKDHSHVSLVFSPNSPDNSVTGPILKWMKSVK
Ga0307478_114845912	3300031823	Hardwood Forest Soil	DPANIITFAETLKAELCKANRCPNYAVFKDHSHISEVMSPDTADTSVTGPILQWIKSVKK
Ga0307406_116935592	3300031901	Rhizosphere	GSCPTTTIFKDHSHMSAVFSANTADQSVTGPILEWMRAVK
Ga0308175_1032343571	3300031938	Soil	TLKDQLCQAKHCPTYMVFKDHSHISEVMSPDTPDTSVTGPILKWMKAVK
Ga0306926_110838392	3300031954	Soil	LCKAGRCPATAELIKDHSHVSLVFSPNTADDSVTGPILKWMKSVK
Ga0307471_1012405662	3300032180	Hardwood Forest Soil	LCKANRCPTYVVFKDHSHISEVMSPDTADTSVTGPILKWMKSVK