Metagenome / Metatranscriptome Family F099551

Overview

Basic Information

• Family ID: F099551
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 103
• Average Sequence Length: 43 residues
• Representative Sequence: MAEQHLCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEERM
• Number of Associated Samples: 87
• Number of Associated Scaffolds: 103

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 100.00 %
• % of genes near scaffold ends (potentially truncated): 97.09 %
• % of genes from short scaffolds (< 2000 bps): 92.23 %
• Associated GOLD sequencing projects: 84
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (95.146 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (26.214 % of family members)
• Environment Ontology (ENVO): Unclassified (33.981 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (42.718 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 11.43%
  β-sheet: 20.00%
  Coil/Unstructured: 68.57%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00011	HSP20	28.16
PF01638	HxlR	8.74
PF13191	AAA_16	3.88
PF00583	Acetyltransf_1	3.88
PF01972	SDH_sah	3.88
PF01738	DLH	1.94
PF00027	cNMP_binding	1.94
PF00694	Aconitase_C	1.94
PF01545	Cation_efflux	1.94
PF00126	HTH_1	0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	28.16
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	8.74
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	7.77
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	1.94
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	1.94
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	1.94
COG0281	Malic enzyme	Energy production and conversion [C]	0.97
COG0686	Alanine dehydrogenase (includes sporulation protein SpoVN)	Amino acid transport and metabolism [E]	0.97
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.97
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.97

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.12 %
Unclassified	root	N/A	3.88 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.12 %
Unclassified	root	N/A	3.88 %

Level 3

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.97 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.15 %
Unclassified	root	N/A	3.88 %

Level 4

Name	Rank	Taxonomy	Distribution
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	81.55 %
Unclassified	root	N/A	3.88 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	74.76 %
Candidatus Woesearchaeota	phylum	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %
Unclassified	root	N/A	3.88 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	36.89 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	2.91 %
Unclassified	root	N/A	3.88 %

Level 7

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.97 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.97 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	1.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.94 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	0.97 %
Unclassified	root	N/A	3.88 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	33.01 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae	0.97 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	33.01 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.97 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	1.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.94 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	0.97 %
Unclassified	root	N/A	3.88 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	0.97 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	33.01 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.97 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	0.97 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	1.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %
Unclassified	root	N/A	3.88 %
unclassified Pseudonocardiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae	0.97 %

Level 10

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	33.01 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %
Pseudonocardiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	0.97 %
Unclassified	root	N/A	3.88 %
unclassified Actinomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → unclassified Actinomyces	0.97 %
unclassified Gaiella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella	1.94 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	0.97 %

Level 11

Name	Rank	Taxonomy	Distribution
Actinomyces sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → unclassified Actinomyces → Actinomyces sp.	0.97 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	33.01 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.97 %
Gaiella sp. SCGC AG-212-M14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	1.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %
Pseudonocardiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	0.97 %
Unclassified	root	N/A	3.88 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	0.97 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000033|ICChiseqgaiiDRAFT_c2391909	All Organisms → cellular organisms → Bacteria	2330
3300000156|NODE_c0341274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	651
3300000651|AP72_2010_repI_A10DRAFT_1057694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	515
3300000890|JGI11643J12802_10311834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	574
3300000955|JGI1027J12803_106326788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	719
3300002075|JGI24738J21930_10114079	All Organisms → cellular organisms → Bacteria	584
3300002244|JGI24742J22300_10030072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	946
3300004006|Ga0055453_10088954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	897
3300004156|Ga0062589_102598081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	525
3300004479|Ga0062595_101718171	Not Available	592

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	0.97%
Environmental	Environmental	81.55%
Host-Associated	Host-Associated	17.48%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	11.65%
Plants	Host-Associated → Plants	17.48%
Solid Waste	Engineered → Solid Waste	0.97%
Terrestrial	Environmental → Terrestrial	69.90%

Category

Habitat	Taxonomy	Distribution
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.97%
Freshwater	Environmental → Aquatic → Freshwater	5.83%
Grass	Engineered → Solid Waste → Grass	0.97%
Marine	Environmental → Aquatic → Marine	0.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.68%
Roots	Host-Associated → Plants → Roots	1.94%
Sediment	Environmental → Aquatic → Sediment	4.85%
Soil	Environmental → Terrestrial → Soil	68.93%

Type

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.94%
Composting	Engineered → Solid Waste → Grass → Composting	0.97%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.85%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.97%
Loam	Environmental → Terrestrial → Soil → Loam	6.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.85%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.97%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.97%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.97%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.80%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.77%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.97%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.88%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.97%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.97%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	4.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.97%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.97%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.83%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.97%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.97%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	26.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.94%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.97%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.97%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.88%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered
3300000651	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10	Environmental
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300002075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4	Host-Associated
3300002244	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1	Host-Associated
3300004006	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2	Environmental
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_23919091	3300000033	Soil	MAVQHRCRRHGRPAVASRVRLLPDGTQETEYLCEIDLAEERXSSGF
NODE_03412741	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MAEQHLCQRHGRPAIASRVRLRPDGTQEIEYLCEIDL
AP72_2010_repI_A10DRAFT_10576942	3300000651	Forest Soil	MAEQHLCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEERMSGRLGGG
JGI11643J12802_103118341	3300000890	Soil	MAEQHLCQRHGRPAVASRVRMRPDGTQEVEYLCEIDLAEERMSGRLGRG
JGI1027J12803_1063267881	3300000955	Soil	MAVDQPVCQRHGRPAVASRVRRRPDGTQEVEYLCEIDLAEEQMSS
JGI24738J21930_101140792	3300002075	Corn Rhizosphere	MAEQHLCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEERMS
JGI24742J22300_100300721	3300002244	Corn, Switchgrass And Miscanthus Rhizosphere	MAVDQPVCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEEQMSSRFG
Ga0055453_100889543	3300004006	Natural And Restored Wetlands	MAVEHLCQRHGRPAVASRVRLRPDGTQETEYLCELDLAEERMSSRLD
Ga0062589_1025980811	3300004156	Soil	MATEQHYCERHHRPAVASRVRLRADGSQEVEYLCELDLAEERLSSRGL
Ga0062595_1017181712	3300004479	Soil	VAAEGPLCERHHRPAVASRVRILPDGTRETEYLCEIDLAEE
Ga0070709_111562622	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MAVEHRCKRHGRPAVASRVRLRPDGTQETEYLCELDLAEERMS
Ga0070714_1013405971	3300005435	Agricultural Soil	MAVEHRCKRHGRPAVASRVRLRPDGTQETEYLCELDLAEERMSSR
Ga0070711_1000321621	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MAVEHLCQRHGRPAVASRVRLRPDGTQETEYLCELDLAEERMSSRLGGSS
Ga0066681_104097371	3300005451	Soil	MAVEHLCQRHGRPAVASRVRLRPDGTQETEYLCELDLAEERMSS
Ga0070695_1011663522	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MAEQHLCKRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEERMSGRLGGSR
Ga0070665_1016220321	3300005548	Switchgrass Rhizosphere	MAAEQHFCERHHRPAVASRVRILADGTRETEYLCELDLA
Ga0070704_1003194563	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MAEQHLCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEERMSGRLGGSRS
Ga0066699_108961012	3300005561	Soil	MAVEHLCKRHGRPAVASRVRLRPDGTQEVEYLCEI
Ga0066699_111919922	3300005561	Soil	MAAAEHLCQKHGRPAVATRTRLLPDGTQEVEYLCEI
Ga0070702_1007089563	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MAEQHLCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEERM
Ga0075364_101142811	3300006051	Populus Endosphere	MADQPVCQRHGRPAVASRVHTRPDGTQEVEYLCEIDVAEERMR
Ga0075367_110807541	3300006178	Populus Endosphere	MAEQHLCKRHGRPAVASRVRLRPDGTQEVEYVCEIDLA
Ga0079222_111139442	3300006755	Agricultural Soil	MAVEHLCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEE
Ga0066660_111977851	3300006800	Soil	MSVEQRCQRHGRPAVATRTRLRPDGTQEVEYLCEIDLAEERMAN
Ga0075424_1028055651	3300006904	Populus Rhizosphere	MAAADQPVCPRHGRPAVASRVRLNPDGTQEVEYLCEIDLAEEQMSSRFGGR
Ga0075436_1015309682	3300006914	Populus Rhizosphere	VAAEGPVCERHHRPAVASRVRILPDGTRETEYLCEIDLAEERMSGRFG
Ga0111539_129431972	3300009094	Populus Rhizosphere	MAEQHLCKRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEERMSGRLGGSRSL
Ga0105245_111381311	3300009098	Miscanthus Rhizosphere	MAAEQHFCERHHRPAVASRVRILADGTRETEYLCEIDLAEERMSG
Ga0111538_111995962	3300009156	Populus Rhizosphere	MATEQWCQRHNRPAVASRVRRRADGTEQVEYLCEIDLAE
Ga0126313_104411621	3300009840	Serpentine Soil	MAVEHRCQRHGRPAIASRVRLRPDGTQEVEYLCELDVAEERMPGRFGG
Ga0126312_103195323	3300010041	Serpentine Soil	MAIEHRCQRHGRPAVASRVRLRPDGTQETEYLCELD
Ga0126314_109129831	3300010042	Serpentine Soil	MAVEHRCQRHGRPAIASRVRLRPDGTREVEYLCELDVAEERMSGRFGGR
Ga0126314_110443781	3300010042	Serpentine Soil	VATEQHFCERHGRPAVASRVRINPDGTREVEYLCD
Ga0126310_117125492	3300010044	Serpentine Soil	MAEQPRCQRHGRPAVASRIRLRPDGTQETEYLCELDLAEERMS
Ga0134125_126735741	3300010371	Terrestrial Soil	MAEQHLCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEE
Ga0134122_103571533	3300010400	Terrestrial Soil	MAEQHLCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEERMSGRLGGSR
Ga0134122_113249161	3300010400	Terrestrial Soil	MAVEHLCQRHGRPAVASRVRLRPDGTQETEYLCELDLAEERM
Ga0126317_110418711	3300011332	Soil	MAVEHLCQRHGRPAVASRVRLRPDGTQETEYLCDID
Ga0120148_10784732	3300011999	Permafrost	MAAEQHFCERHHRPAVASRVRTLPDGTQEIEYLCEIDLAAGRIVVARGFADHDYPR*
Ga0137371_109133322	3300012356	Vadose Zone Soil	MAAADQPVCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEEQM
Ga0137419_100918123	3300012925	Vadose Zone Soil	MAAEQHHCEKHHRPAVASRVRILPDGTRQTEYLCEIDLAEQ
Ga0162653_1000091573	3300012937	Soil	MSEQPRCPRHGRPAIASRVRLRPDGTQETEYLCEIDLAEERMQRGFGRRSLQLGES*
Ga0134110_102042762	3300012975	Grasslands Soil	MAVEQHLCQRHGRPAVASRVRLRPDGTQEVEYLCDIDLAEERMGRLGGGR
Ga0137418_105102253	3300015241	Vadose Zone Soil	MAAEQHFCERHHRPAVASRVRTRPDGTQEVEYLCEIDLAEERMASRFGPQ*
Ga0134073_100446952	3300015356	Grasslands Soil	MAAEQHLCRRHGRPAVASRVRVRPDGTQEVEYLCDI
Ga0132256_1019812021	3300015372	Arabidopsis Rhizosphere	MAEQHLCKRHGRPAVASRVRLRPDGTQEVEYLCEI
Ga0184605_104035262	3300018027	Groundwater Sediment	MAEQHLCQRHGRPAVASRIRTRPDGTQEVEYLCEIDLAEE
Ga0184617_10773581	3300018066	Groundwater Sediment	MAEQPVCQRHGRPAVASRVRLRPDGTQEVEYLCEIDVAEERMGRLG
Ga0184635_1000135110	3300018072	Groundwater Sediment	MAVDQPVCKRHGRPAVASRVVTRPDGTQEVEYLCELDLAEERMRSPFGG
Ga0184609_103455192	3300018076	Groundwater Sediment	MAVEQPVCKRHGRPAVASRVVTRPDGTQEVEYLCELDLAEERMRSP
Ga0184625_105787941	3300018081	Groundwater Sediment	MAVEHLCQRHGRPAVASRVRLRPDGTQETEYLCELDLAEERMSSR
Ga0066662_117171922	3300018468	Grasslands Soil	MSVEHLCQRHGRPAVPTRTRPRPDGTQEVEYLCENDLAEARQAH
Ga0184642_10526941	3300019279	Groundwater Sediment	MAVEQPVCQRHGRPAVAQRIRRLPDGTEEVEYLCELDLAEERMSG
Ga0184642_10625452	3300019279	Groundwater Sediment	MATEQHYCQRHNRPAVASRVRVRPDGTQEVEYLCEIDLAEERM
Ga0184642_13222632	3300019279	Groundwater Sediment	MATEQHYCERHHRPAVASRVRVLPDGTQEVEYLCELDLAE
Ga0193704_10532503	3300019867	Soil	MAEQHLCQRHGRPAVASRVRMRPDGTQEVEYLCEI
Ga0193728_11591641	3300019890	Soil	MSVEHRCQRHGRPAVATRTRLRPDGTQEVEYLCEIDLAE
Ga0193730_10988053	3300020002	Soil	MTVEHLCQRHGRPAVASRVRLRPDGTQETEYLCELDLAEE
Ga0193730_11546262	3300020002	Soil	MAAADQPICPRHGRPAVASRVRLNPDGTQEVEYLCEIDLAEEQMSSR
Ga0210382_102891972	3300021080	Groundwater Sediment	MAAADQPVCPRHGRPAVASRVRLRPDGTQEVEYLC
Ga0210382_103277741	3300021080	Groundwater Sediment	MATEQHYCQRHHRPAVASRVRTLPDGTQEVEYLCEIDLAEERM
Ga0179584_11133851	3300021151	Vadose Zone Soil	MAVEHRCQRHGRPAVASRVRLRPDGTQETEYLCELDLAEER
Ga0247743_10488272	3300023067	Soil	MAEQHLCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLA
Ga0247679_10370322	3300024251	Soil	MAVEHLCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEERMG
Ga0207647_106685111	3300025904	Corn Rhizosphere	MAEQHLCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEERMSGRLG
Ga0207652_106161711	3300025921	Corn Rhizosphere	MAVEHLCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEERMGRLGG
Ga0207644_115527471	3300025931	Switchgrass Rhizosphere	MAVDQPVCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEEPMSS
Ga0207667_104235761	3300025949	Corn Rhizosphere	MAEQHLCQRHGRPAVASRVRLRPDGSQEVEYLCEIDLAEERMSGRLGGSR
Ga0207667_114939942	3300025949	Corn Rhizosphere	MAEQHLCKRHGRPAVASRVRLRPDGTQEVEYLCEID
Ga0208777_10204872	3300025996	Rice Paddy Soil	MTAEHLCQRHGRPAVASRVRLRPDGTEEVEYLCEIDLAEERMGRLGG
Ga0207428_108609271	3300027907	Populus Rhizosphere	MADQPVCQRHGRPAVASRVHTRPDGTQEVEYLCEIDV
Ga0207428_111811311	3300027907	Populus Rhizosphere	MAEQHLCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAE
Ga0247749_10355481	3300027993	Soil	MAEQHLCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEERMSGR
Ga0307295_100082191	3300028708	Soil	MAEQHLCQRHGRPAVASRVRQRPDGTQEVEYLCEIDLAEERMS
Ga0307301_102533871	3300028719	Soil	MAAADQPVCPRHGRPAVASRVRLNPDGTQEVEYLCEIDLAEEQM
Ga0307318_101800321	3300028744	Soil	VATEQHYCQRHHRPAVASRVRTLPDGTEEVEYLCELDIAE
Ga0307280_101611151	3300028768	Soil	MAAADQPVCPRHGRPAVASRVRLNPDGTQEVEYLCEIDLAEEQMS
Ga0307288_104826541	3300028778	Soil	MAEQHLCQRHGRPAVASRVRLRPDGTQEVEYLCEIDL
Ga0307323_103430182	3300028787	Soil	MAEQHLCQRHGRPAVASRVRQRPDGTQEVEYLCEIDLAEERMSGRLGGSRSL
Ga0307290_100205395	3300028791	Soil	MAVEQPVCQRHGRPAVAQRIRRLPDGTEEVEYLCE
Ga0307290_101949642	3300028791	Soil	MAEQHLCQRHGRPAVASRVRMRPDGTQEVEYLCEIDLAEERMSGRL
Ga0307290_103399902	3300028791	Soil	MAVEHVCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEERMG
Ga0247824_108470202	3300028809	Soil	MAEQHLCQRHGRPAVASRVRLRPDGTQEVEYLCELDLAEERMS
Ga0307302_100581321	3300028814	Soil	MAEQHLCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEERMSGRLGG
Ga0307302_106251792	3300028814	Soil	MAVEHLCQRHGRPAVASRVRLLPDGTQETEYLCELD
Ga0307310_102950132	3300028824	Soil	MASEQHYCQRHNRPAVASRVRTRPDGTQEVEYLCEIDLAEERMQS
Ga0307314_100196914	3300028872	Soil	MAEQHLCQRHGRPAVASRVRMRPDGTQEVEYLCEID
Ga0307286_100211031	3300028876	Soil	MAVEQPVCQRHGRPAVASRVVTRPDGTQGVEYLCELDLA
Ga0307286_100566951	3300028876	Soil	MAEQPRCQRHGRPAVASRVRLRPDGTQETEYLCELD
Ga0307308_101258142	3300028884	Soil	MAAADQPVCAQHGRPAVASRVRLRPDGTQEVEYLCEIDLAEEQMSSRFGGR
Ga0102757_100030131	3300030785	Soil	MASEQHFCARHHRPAIASRVHLRPDGSQEVEYLCELDVAEERMSNRF
Ga0102757_100504213	3300030785	Soil	MAVEHRCQRHGRPAVASRVRLRPDGTQETEYLCELDLAEERMSSR
Ga0308205_10265822	3300030830	Soil	MAVEQHYCQRHGRPAVASRVRILPDGTQETEYLCELDLA
Ga0308205_10660622	3300030830	Soil	MAVEHRCQRHGRPAVASRVRLRPDGTQETEYLCELDLAEERMSTRLGGS
Ga0308206_11577091	3300030903	Soil	VATEQHYCQRHHRPAVASRVRTLPDGSQEVEYLCELDIAEERLSRGF
Ga0308200_11429512	3300030905	Soil	VAAEQHFCERHHRPAVASRVRILPDGTRETEYLCEIDLAEERM
Ga0308200_11673802	3300030905	Soil	VATEQHYCQRHHRPAVASRVRTLPDGTQEVEYLCEI
Ga0308204_101246991	3300031092	Soil	MAVEHLCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEERMGHLG
Ga0307505_102369452	3300031455	Soil	MAVQHRCQRHGRPAVASRVRLLPDGTQETEYLCEIDLAEERLSSGFGN
Ga0307469_120812792	3300031720	Hardwood Forest Soil	MAVDQPVCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEEQMSSRFGGRGS
Ga0310896_106663212	3300032211	Soil	MAVEHLCQRHGRPAVASRVRLRPDGTQETEYLCELDLAEERMSTRL
Ga0247829_108087311	3300033550	Soil	MAEQHLCQRHGRPAVASRVRLRPDGTQEVEYLCEIDLAEERMSGRLGGS
Ga0373950_0004089_2016_2123	3300034818	Rhizosphere Soil	MAVEHLCQRHGRPAVASRVRLRPDGTQETEYLCELD