Metagenome / Metatranscriptome Family F099536

Basic Information
Family ID	F099536
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	58 residues
Representative Sequence	ADFSVVLFRPNFMLASEEYPMKAHKNQWLLTMPSPPAIPGGGTNQGTHHGVWCADAFAVT
Number of Associated Samples	77
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.97 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.15

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (21.359 % of family members)
Environment Ontology (ENVO)	Unclassified (26.214 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.369 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94. 1ARcpr5oldR_0022383 2F12B_100804131 3ARCol0yngRDRAFT_10057531 4KanNP_Total_F14TBDRAFT_10253881 5JGI11851J11668_10001391 6JGI11851J11668_10001411 7JGI10213J12805_101248522 8JGI1027J12803_1051797091 9JGIcombinedJ43975_100188203 10JGI25406J46586_102346771 11Ga0063455_1016482731 12Ga0062590_1024088472 13Ga0066674_105499212 14Ga0066683_106564751 15Ga0066675_105199941 16Ga0065704_103577992 17Ga0065704_103694492 18Ga0065705_100863602 19Ga0065705_101121022 20Ga0065705_101649403 21Ga0065707_101071931 22Ga0065707_108558592 23Ga0066388_1013204391 24Ga0066388_1062834761 25Ga0066388_1078647192 26Ga0068869_1006126191 27Ga0068868_1009475242 28Ga0070700_1004382072 29Ga0058697_103436321 30Ga0066708_106122531 31Ga0066654_105391541 32Ga0068861_1019307721 33Ga0066903_1022571502 34Ga0066903_1025235661 35Ga0066903_1031732671 36Ga0066903_1059633571 37Ga0075288_10620712 38Ga0081455_1000733214 39Ga0081455_108493742 40Ga0081539_102129051 41Ga0066656_110832362 42Ga0075417_100546563 43Ga0075417_102320781 44Ga0075417_104048492 45Ga0075427_100026203 46Ga0075427_100093553 47Ga0066659_118881911 48Ga0075428_1004577061 49Ga0075428_1005686092 50Ga0075428_1018157581 51Ga0075421_1002670753 52Ga0075421_1002816902 53Ga0075421_1009302613 54Ga0075430_1015323122 55Ga0075431_1002909963 56Ga0075433_109199812 57Ga0075425_1002366762 58Ga0075434_1020470411 59Ga0075434_1022805191 60Ga0075419_100903971 61Ga0075419_105301593 62Ga0075419_113657051 63Ga0099793_105544441 64Ga0105679_107752012 65Ga0099830_108691561 66Ga0105245_126120842 67Ga0075418_125161231 68Ga0105249_114400311 69Ga0126315_111859291 70Ga0126312_102874861 71Ga0126312_104285332 72Ga0126314_105681671 73Ga0126380_107229982 74Ga0126380_119640921 75Ga0126384_113004371 76Ga0126384_114380911 77Ga0126370_108889241 78Ga0126376_113859451 79Ga0137377_118377342 80Ga0150985_1192452281 81Ga0150985_1230556971 82Ga0157328_10001871 83Ga0157333_10216881 84Ga0157319_10264921 85Ga0157305_100220312 86Ga0137419_116364712 87Ga0137410_116726421 88Ga0126369_132731781 89Ga0157375_103165291 90Ga0157379_100515361 91Ga0137409_102612813 92Ga0207669_103537861 93Ga0207712_117279412 94Ga0209234_10275612 95Ga0209239_10410402 96Ga0209239_13756901 97Ga0209382_102748771 98Ga0247818_112043381 99Ga0307504_102128821 100Ga0307302_104907121 101Ga0306917_110117191 102Ga0310900_100700002 103Ga0314796_098620_103_288
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94. 1ARcpr5oldR_0022383 2F12B_100804131 3ARCol0yngRDRAFT_10057531 4JGI11851J11668_10001411 5JGI10213J12805_101248522 6JGI1027J12803_1051797091 7JGI25406J46586_102346771 8Ga0062590_1024088472 9Ga0066674_105499212 10Ga0066683_106564751 11Ga0065705_100863602 12Ga0065705_101121022 13Ga0065705_101649403 14Ga0065707_101071931 15Ga0066388_1062834761 16Ga0066388_1078647192 17Ga0068868_1009475242 18Ga0066903_1022571502 19Ga0081455_1000733214 20Ga0075417_100546563 21Ga0075427_100026203 22Ga0066659_118881911 23Ga0075421_1002816902 24Ga0075421_1009302613 25Ga0075425_1002366762 26Ga0075434_1022805191 27Ga0075419_113657051 28Ga0105679_107752012 29Ga0099830_108691561 30Ga0126315_111859291 31Ga0126312_102874861 32Ga0126380_107229982 33Ga0126384_114380911 34Ga0126376_113859451 35Ga0150985_1230556971 36Ga0157333_10216881 37Ga0126369_132731781 38Ga0157379_100515361 39Ga0247818_112043381 40Ga0306917_110117191
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60 1Ga0075417_104048492 2KanNP_Total_F14TBDRAFT_10253881 3JGI11851J11668_10001391 4JGI11851J11668_10001411 5Ga0063455_1016482731 6Ga0066674_105499212 7Ga0066683_106564751 8Ga0066675_105199941 9Ga0065704_103694492 10Ga0065705_100863602 11Ga0065705_101121022 12Ga0065705_101649403 13Ga0065707_101071931 14Ga0058697_103436321 15Ga0066708_106122531 16Ga0066903_1031732671 17Ga0081455_1000733214 18Ga0066656_110832362 19Ga0075417_102320781 20Ga0075427_100026203 21Ga0075427_100093553 22Ga0066659_118881911 23Ga0075428_1004577061 24Ga0075421_1002816902 25Ga0075421_1009302613 26Ga0075433_109199812 27Ga0075425_1002366762 28Ga0075419_113657051 29Ga0099793_105544441 30Ga0105679_107752012 31Ga0075418_125161231 32Ga0105249_114400311 33Ga0126315_111859291 34Ga0126312_104285332 35Ga0126314_105681671 36Ga0126380_107229982 37Ga0126384_114380911 38Ga0126376_113859451 39Ga0150985_1230556971 40Ga0157328_10001871 41Ga0157333_10216881 42Ga0157379_100515361 43Ga0247818_112043381 44Ga0306917_110117191
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.15
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.15
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Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF02371	Transposase_20	11.65
PF00582	Usp	1.94
PF13610	DDE_Tnp_IS240	1.94
PF14104	DUF4277	1.94
PF01609	DDE_Tnp_1	1.94
PF12762	DDE_Tnp_IS1595	1.94
PF11695	DUF3291	0.97
PF13524	Glyco_trans_1_2	0.97
PF07730	HisKA_3	0.97
PF13649	Methyltransf_25	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	11.65
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	1.94
COG3293	Transposase	Mobilome: prophages, transposons [X]	1.94
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	1.94
COG5421	Transposase	Mobilome: prophages, transposons [X]	1.94
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	1.94
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	1.94
COG0176	Transaldolase/fructose-6-phosphate aldolase	Carbohydrate transport and metabolism [G]	0.97
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.97
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.97

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Scaffold	Taxonomy	Length	IMG/M Link
3300006049\|Ga0075417_10232078	Not Available	881	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.28%
Host-Associated	Host-Associated	42.72%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	42.72%
Terrestrial	Environmental → Terrestrial	57.28%

Habitat	Taxonomy	Distribution
Phylloplane	Host-Associated → Plants → Phylloplane	0.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.18%
Soil	Environmental → Terrestrial → Soil	57.28%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.71%
Loam	Environmental → Terrestrial → Soil → Loam	12.62%
Sand	Environmental → Terrestrial → Soil → Sand	0.97%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.97%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	26.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.85%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.97%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.97%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.97%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.97%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	26.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	21.36%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.97%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.74%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	4.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.83%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000652	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Col-0 young rhizosphere DNA	Host-Associated	Open in IMG/M
3300000709	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA F1.4 TB amended with BrdU and acetate no abondance	Environmental	Open in IMG/M
3300000754	Amended soil microbial communities from Kansas Great Prairies, USA - acetate Total DNA F2.4TB	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M

Showing 1 to 10 of 77 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ARcpr5oldR_0022383	3300000041	Arabidopsis Rhizosphere	MGDFSVVLFRSDFVLAFEEHPVKVHKNQWLLILPSPPDLHRGAIHQGTYHG
F12B_100804131	3300000443	Soil	HFMLASEEYPMKVHKNQWLSAPLSSPDLPCGATNQGTHPGVWDAAAFPVT*
ARCol0yngRDRAFT_10057531	3300000652	Arabidopsis Rhizosphere	NFMLASEGYLVKVHKNQRLLTLPSPPNLPCGATNQGTYHGVWWADAFAVT*
KanNP_Total_F14TBDRAFT_10253881	3300000709	Soil	MLVSEEDLMKVHKNQWLLSLLFPPDIPCGATNQGTHPGVWDADAFPVT*
JGI11851J11668_10001391	3300000754	Soil	MGDFSVVLFRPHFMLASEGCPMKVHKNQWLSAILSSPDLPCGATNQGTHPGVWDADAFPVT*
JGI11851J11668_10001411	3300000754	Soil	NVEIFYLPADFSVVLFRPNFMLASEEHPMKVHKNQRLLTIPSPPDIPCGATNQGTHHGVWGADTFAVT*
JGI10213J12805_101248522	3300000858	Soil	MKEHKNQWLLTMPSPPAIPGGGTNQGTHHGVWRADA
JGI1027J12803_1051797091	3300000955	Soil	EGYPMKVHKNQRLLTLLSPPILPCGATNQGTYHGVWWTDALTVT*
JGIcombinedJ43975_100188203	3300002899	Soil	MLASEGYPMKVHKNQRLLTLPSLPNLPRGATNQGTYHGVWWTDAFAVT*
JGI25406J46586_102346771	3300003203	Tabebuia Heterophylla Rhizosphere	SVVLFRPNFMLVSEENPMKAHKNQWLLTMPSPPAIPCGGTNQGTHHGVGRADAFAVT*
Ga0063455_1016482731	3300004153	Soil	DFSVVLFRPHCMLASEGYLMKVHKNQRLLTLPSPPNLPCGATNQGTYHDVWWTDAFAVT*
Ga0062590_1024088472	3300004157	Soil	MGDFSVVLFRPNFMLASEGYPMKVHKNQRLLNLPSPPNLPCGATNQGTYHG
Ga0066674_105499212	3300005166	Soil	MGDFSVVLFRPNFMLFSEKNRVKVHTDQGLLTTPSPPALPCGATNQGTHHGVWGADTFA
Ga0066683_106564751	3300005172	Soil	TDFSVVLFRPNFMLVSEVHSMKVHKNQWLLTLPSPFDFPRGATNQGTPHGIWGADAFAVT
Ga0066675_105199941	3300005187	Soil	TDFSVVLFRPNFMLASEGYLIKVHTNQRLLTLPSPPNLPCGATHQGTYHGVWWTDAFAVT
Ga0065704_103577992	3300005289	Switchgrass Rhizosphere	LPLDRSLLMGDFSVVLFRPNFMLASEEHPMKVHKNQRLLTIPSSPDIPCGATNQGTHHGVWGADTFAVT*
Ga0065704_103694492	3300005289	Switchgrass Rhizosphere	MRKSWIELTDFSVVLFRPNFMLASEEYPMKAHKNQWLLTMLYPPAIPCGGANQGTHHGVWRADAFAVT*
Ga0065705_100863602	3300005294	Switchgrass Rhizosphere	MLVSEEYLMKAHKNQWLLNLLFPPDIPWGATNQGTHPRVWGADAIAVA*
Ga0065705_101121022	3300005294	Switchgrass Rhizosphere	MLASEGHCMKAHKNQWLLTMPSPPAIPCEGANQGIHHGVWGADAFAVA*
Ga0065705_101649403	3300005294	Switchgrass Rhizosphere	MLTSEEHPMKVNKNQWLLTIPSPPDTLCGATNQGTRHGVWGAVAFAVT*
Ga0065707_101071931	3300005295	Switchgrass Rhizosphere	MLVSEESSMKAHKNQWFLNLLSPPDFPCGVTNWGTHYGVWGAEAFAVT*
Ga0065707_108558592	3300005295	Switchgrass Rhizosphere	DFSVVLFRPNFMLASEEHLMKVHKNQWLSTMPSHPDLPYGATNQGLHHGVRGADAFAVT*
Ga0066388_1013204391	3300005332	Tropical Forest Soil	DFSVVLFRPNFMLASEEYPMKAHKYQWLLTMPSPPAIPGGGTNQGTHHGVWLANAFAVT*
Ga0066388_1062834761	3300005332	Tropical Forest Soil	MIRKKTVYHWMSFPDFSVVLFRPNFMLASEWYLVKVHKNQRLLTLPSPPNLPCGATNQGTYHGVWWADAFA
Ga0066388_1078647192	3300005332	Tropical Forest Soil	MLVSEEYPMKVHKNQWILTMPSPPAIPGGGTNQGTHHGVWCADAFA
Ga0068869_1006126191	3300005334	Miscanthus Rhizosphere	LMGDFSVVLFRPNFMLSSEGYPMKVHKNQRLLILPSPPNLPCGATNQGAHHDVWVQTPSQ
Ga0068868_1009475242	3300005338	Miscanthus Rhizosphere	VGEPPSTEIGVPNIPDFSVVLFRPNFMLASEEYPMKAHKNQWLLTMSSPPAIPGGGTNQRTHHGVWRADAFAVT*
Ga0070700_1004382072	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MLASEEYPMKAHKNQWLLTMSSPPAIPGGGTNQRTHHGVWRADAFAVT*
Ga0058697_103436321	3300005562	Agave	PPDFSVMLIRPNFMLASEGYLVKVHTNQRLLTLPSPPNLPCGATNQGTYHGVWWADAFAVT*
Ga0066708_106122531	3300005576	Soil	TDFSVVLFRPNFMLASEGYPMKVHKNQWLSTLLSPPNLPCGATNQGTYHGVWGQMPSQ*
Ga0066654_105391541	3300005587	Soil	MLASEGYLVKAHKNQRLLTLPSPPNLPCGATNQGTYHGVWW
Ga0068861_1019307721	3300005719	Switchgrass Rhizosphere	DFSVVLFRPNFMLASEGYPMKVHKNQRLLNLPSPPNLPCGATNQGTYHGVWWADAFAVI*
Ga0066903_1022571502	3300005764	Tropical Forest Soil	HMKVPKNQWVWAMLSPPNLPGGGTNQGTHPGVWGADAYAVT*
Ga0066903_1025235661	3300005764	Tropical Forest Soil	MGDFSVVLFRPNFMLASEEYPMKAHKYQWLLTMPSPPAIPGGGTNQGTHHGVWLANAFAVT*
Ga0066903_1031732671	3300005764	Tropical Forest Soil	DFSVVLFRPNFMLVSEEYPMKAHKNQWFLTPPSPPDLPWGATNQGTHHGVWRADAFAGT*
Ga0066903_1059633571	3300005764	Tropical Forest Soil	DFSVVLFRPHFMLVSEEYPMKVHKNQWLLTMPSPPAIPGGGTNQGTHHGVWCADAFAVT*
Ga0075288_10620712	3300005874	Rice Paddy Soil	TDFSVVLFRPNFMLASEEYPMKAHKNQWLLTMLSPPAIPCGGANQGTHHGVWRADAFAVT
Ga0081455_1000733214	3300005937	Tabebuia Heterophylla Rhizosphere	MGDFSVVPFRLNFMLFSEKNHVKALKNQWVLTTSSPPAIPCGGTNPGTHHVSVDTSVYER
Ga0081455_108493742	3300005937	Tabebuia Heterophylla Rhizosphere	GSLIADFSVVLFRPNFMLASEGYLVKVHKNQRLLTLPSPPNLPCGATNQGTYHGVWWADA
Ga0081539_102129051	3300005985	Tabebuia Heterophylla Rhizosphere	KPSDFSVVLFRPNFMLASEEYPMKAHKNQWLLTVLSPPAIPCGGTNQGTHHGVWRADTFAVT*
Ga0066656_110832362	3300006034	Soil	PDFSVVLFRPNFMLASEEHPMKTHKNQWLSTMPSPPAILWGATNQGTHHGVWGADAFAVT
Ga0075417_100546563	3300006049	Populus Rhizosphere	MGDFSVVLLQSDFMLASEEHPMKVHKNQWLSNLLSPPDVPRGATNQGTHPRGWGAGACAVT*
Ga0075417_102320781	3300006049	Populus Rhizosphere	MLVSEEYLMKVHKYQWLLNLLFPPDIPCGATNQGRHHGVWGADAIAVA*
Ga0075417_104048492	3300006049	Populus Rhizosphere	ADFSVVLFRPNFMLASEEYPMKAHKNQWLLTMPSPPAIPGGGTNQGTHHGVWCADAFAVT
Ga0075427_100026203	3300006194	Populus Rhizosphere	MSKVVVGLSTDFSVVLFRSDFVLVSEEHLMKMHKNQWLLTFCLPPDISWRAMNQGTHHG
Ga0075427_100093553	3300006194	Populus Rhizosphere	MGDFSVVLLQSDFMLASEEHPMKVHKNQWLSNLLSPPDIPRGATNQGTHPRGWGAGACAVT*
Ga0066659_118881911	3300006797	Soil	FRQQLLLASGVSRFPDFSVVLFRPNFMLASEGYPMKVHKNQWLSTLLSPPNLPCGATNQGTYHGVCGTDAFAVT*
Ga0075428_1004577061	3300006844	Populus Rhizosphere	MLASEGYLVKVHKNQRLLTLLSPPNLPCGATNQGTYHGVWWTDALT
Ga0075428_1005686092	3300006844	Populus Rhizosphere	MLASEGYPMKVHKNQRLLTLPSPPNLPRGATNQGTYYGVWWTDAFAVT*
Ga0075428_1018157581	3300006844	Populus Rhizosphere	DFSVVLFRPNFMLASEEHLMKVHKNQWFLTMPSSPDLPYGATNQGLHHGVRGADAFAVT*
Ga0075421_1002670753	3300006845	Populus Rhizosphere	MLASEEYPMKVHKNQWLPTLLSSPDLPCGATNQGTHPGVRDADAFPVT*
Ga0075421_1002816902	3300006845	Populus Rhizosphere	MVENCTDFSVVLFRPNFTLVSEGNPVKTHKNQRLLNPLCPLDISWGAMNQGTHDGIWGAGTFAVT*
Ga0075421_1009302613	3300006845	Populus Rhizosphere	MGDFSVVLFRPNCMLASEKHPMKVHKNQCVLTNSFPPDTPCGATNQGTQHGVWGANAFAVT*
Ga0075430_1015323122	3300006846	Populus Rhizosphere	MLASEEYPMKAHKNQWLLTMPSPPAIPGGGTNQGTHHGVWCADAFAVT*
Ga0075431_1002909963	3300006847	Populus Rhizosphere	MLVSEEYPMKAHKNQWLLIMPSPPAIPGGGTNQGTHHGVWRADAFAVTEMRQSTAM
Ga0075433_109199812	3300006852	Populus Rhizosphere	MFTPDFSVVLFRLDFMLASEEDPMKAHKNQWLLTMPSPPAIPCGAMNQGTHHGVWRADAFAVT*
Ga0075425_1002366762	3300006854	Populus Rhizosphere	MGDFSVVLFRSDCMLMSEEHPMKAHKNQWLLILPSPPDLPWGAIHQGTYHRVWGADAFAVT*
Ga0075434_1020470411	3300006871	Populus Rhizosphere	DFSVVLFRPNFMLASEEHLMKVHKNQWLLTMPSSPDLPYGATNQGLHHGVRGADAFAVT*
Ga0075434_1022805191	3300006871	Populus Rhizosphere	MKVHKNQWFLTLPSPPDIPYEAMNQGTHHGVWGAD
Ga0075419_100903971	3300006969	Populus Rhizosphere	MKAHKNQWLLTMPSPPAIPCGGTNQGTHHGVRRADTLAAT*
Ga0075419_105301593	3300006969	Populus Rhizosphere	SVVLFRSNFMLVSEEYPMKAHKNQWLLIMPSPPAIPGGGTNQGTHHGVWRADAFAVT*
Ga0075419_113657051	3300006969	Populus Rhizosphere	MAALPGNSAYEADFSVVLFRPDYMLASEEYPMKVHKNQWLPTLLSSPDLPCGATNQGTHPGVRDADAFPVT*
Ga0099793_105544441	3300007258	Vadose Zone Soil	PDFSVVLFRPNFMLTSEEHPMKAHKNQGLLTTPSPPVIPCGATNQGTHHGVWGADAFAVT
Ga0105679_107752012	3300007790	Soil	MGDFSVVPFRSDFVLVSEGNPVKTHKNQWLLNPLSPLDIPCEATNQGTYPRVGGADA
Ga0099830_108691561	3300009088	Vadose Zone Soil	SHQKFTESQDNTHGTDFSVVLFRPNFMLTSEEHPMKAHKNQGLLTTPSPPVIPCGATNQGTHHGVWGADAFAVT*
Ga0105245_126120842	3300009098	Miscanthus Rhizosphere	MKAHKNQWLLTMLSPPAIPCGGANQGTHHGVWRADAFAVT
Ga0075418_125161231	3300009100	Populus Rhizosphere	SLLMGDFSVVLFRPNFMLASEEHPMKVHKKSTALNLLSPPDILWGATNQGTHHGVWGADTFAVT*
Ga0105249_114400311	3300009553	Switchgrass Rhizosphere	LMGDFSVVLFRPNFMLASEGYPMKVHKNQRLLNLPSPPNLPCGATNQGTYHGVWWADAFAVI*
Ga0126315_111859291	3300010038	Serpentine Soil	ADFSVVLFRSDFLLVSKKNRMKMHRNQWVLDPLSPPDLPWGAMNQGTHHGVWGADTFAVT
Ga0126312_102874861	3300010041	Serpentine Soil	MLGSEEHPMKTHKNQRVLNPLFPPDSPWRVLNQGTHHGVWGADAFAVTQHGTTLSDV
Ga0126312_104285332	3300010041	Serpentine Soil	MLGSEEHPMKTHKNQRALNPLFPPDSPWRVLNQGTHHGVWGADAFAVTQHGTTLSDV
Ga0126314_105681671	3300010042	Serpentine Soil	PDFSVVLFRPNFMLASEEHLMKVHKNQWLLTMPSPPDFPYGATNQGLHHGVRGADAFAVT
Ga0126380_107229982	3300010043	Tropical Forest Soil	SEKNRMKVHKNQWLLNLLLPPDIPCGATKQGIHYDVWGTDAIAVA*
Ga0126380_119640921	3300010043	Tropical Forest Soil	NFMLASEEYPMKAHKNQWLLTMLSPPAIPCGGTNQGTHHGVWRVDTFAVT*
Ga0126384_113004371	3300010046	Tropical Forest Soil	LGVSADQLPDFSVVLFRPHFMLASEGYLMKVHKNQRLLILPSPPNLPGGATNQGTYHGVW
Ga0126384_114380911	3300010046	Tropical Forest Soil	MGDFSVVLFRPNFMLTSEKNPMKVLKNQWIPTLSSSHDLPCSATNQGTPHSGWGADAFV*
Ga0126370_108889241	3300010358	Tropical Forest Soil	MRAAKVSDFSVVLFRPNFMLASEEYPMKAHKNQWLLTMLSPPAIPCGGANQGTHHGVWRADAFAVT*
Ga0126376_113859451	3300010359	Tropical Forest Soil	DRERGHYWAVYLDPDFSVVLFRPDFMLASEGYPMKVHKNQRLLTLPSPLNLPCGATNQGAYHDVWWADAFAVT*
Ga0137377_118377342	3300012211	Vadose Zone Soil	SVVLFRPNFILVSEVHSMKVHKNQWLLTLPSPFDFPRGATNQGTPHGIWGADAFAVT*
Ga0150985_1192452281	3300012212	Avena Fatua Rhizosphere	AADFSVVLFRPNFMLASEEHPMKVHKNQRFLTLPSPPDIPWGATNQGTHHCVWGADAFAVT*
Ga0150985_1230556971	3300012212	Avena Fatua Rhizosphere	VSFLTSFLVQSQKYPMKARKNQWLSNLLSPPDIPCGATNQGTHHGVWGADAFAVT*
Ga0157328_10001871	3300012478	Arabidopsis Rhizosphere	MGDFSVVLFRSDFVLAFEEHPVKVHKNQWLLILPSPPDLHRGAIHQGTYHGVWGADAFAVT*
Ga0157333_10216881	3300012484	Soil	MGDFSVVLFRPNFMLASEDHLMKVHKNQWLSTMPSPPALPYGATNQGLHHGVRGADAFAGT*
Ga0157319_10264921	3300012497	Arabidopsis Rhizosphere	MGDFSVVLFRSDFVVASKEHPVKVHKNQWLLILPSPPDLHRGAIHQGTYHGVWGADAF
Ga0157305_100220312	3300012891	Soil	MGDFSVVLFRPNFMLASEGYPMKVHKNQRLLNLPSPPNLPCGATNQGTYHGVWWADAFAVI*
Ga0137419_116364712	3300012925	Vadose Zone Soil	DFSVVLFRPNFMLTSEEHPMKAHKNQGLLTTPSPPVLPCGATNQGTHHGVWGADAFAVT*
Ga0137410_116726421	3300012944	Vadose Zone Soil	MVFLSQGRNDSDFSVVLFRPNFMLTSEEHPMKAHKNQGLLTTPSPPVIPCGATNQGTHHGVWGADAFAVT*
Ga0126369_132731781	3300012971	Tropical Forest Soil	SVAVGLMGDFSVVLFRPHFMLASEEYPMKVHKNQWLLTMPSPPAIPGGGTNQGTHHGVWCADAFAVT*
Ga0157375_103165291	3300013308	Miscanthus Rhizosphere	MGDFSVVLFRPNFMLAFEEYPMKAHKNQWLLTMPSPPAIPCGGTNQGTHH
Ga0157379_100515361	3300014968	Switchgrass Rhizosphere	MEAAQRFVSTQYTDFSVVLFRPNFMLSSEGYPMKVHKNQRLLILPSPHNLPCGATNQGAHHDVWVQTPSQ*
Ga0137409_102612813	3300015245	Vadose Zone Soil	MGDFSVVLFRPNFMLTSEEHPMKAHKNQGLLTTPSPPVIPCGATNQGTHHGVWGADAFAVT*
Ga0207669_103537861	3300025937	Miscanthus Rhizosphere	YVQASDFSVVLFRPNFMLASEEYPMKAHKNQWLLTMSSPPAIPGGGTNQRTHHGVWRADAFAVT
Ga0207712_117279412	3300025961	Switchgrass Rhizosphere	PDFSVVLFRPNFMLASEEYPMKAHKNQWLLTMLSPPAIPCGGANQGTHHGVWRADAFAVT
Ga0209234_10275612	3300026295	Grasslands Soil	MGDFSVVLFRPNFMLVSEVHSMKVHKNQWLLTLPSPFDFPRGATNQGTPHGIWGADAFAV
Ga0209239_10410402	3300026310	Grasslands Soil	LFETDISCEFSRENETDFSVVLFRPNFMLVSEVHSMKVHKNQWLLTLPSPFDFPRGATNQGTPHGIWGADAFAVT
Ga0209239_13756901	3300026310	Grasslands Soil	LLLDRVIQTDFSVVLFRPNFMLASEGYPMKVHKNQWLSTLLSPPNLPCGATNQGTYHGVWGTDAFAVT
Ga0209382_102748771	3300027909	Populus Rhizosphere	MGDFSVVLLQSDFMLASEEHPMKVHKNQWLSNLLSPPDIPRGATNQGTHPRGWGAGACAV
Ga0247818_112043381	3300028589	Soil	VDNPDFSVVLFRPNLMLASDTYLMKAHKNQWLSNLLSLPDILRGATHQGTHHGIWGADAFAVT
Ga0307504_102128821	3300028792	Soil	NFMLTSEEHPMKAHKNQGLLTTPSPPVIPCGATNQGTHHGVWGADAFAVT
Ga0307302_104907121	3300028814	Soil	MGDFSVVLFRPNFMLASEEHLMKVHKNQWLSTIPSPPDLPYGATNQGLHHGVRGADAFAV
Ga0306917_110117191	3300031719	Soil	MQRLILPDFFVVLFRPNFMLVSEGYLMKMHKNQWVLNTLFPPDIPWGAIHQGTPHGVWSADTFAVT
Ga0310900_100700002	3300031908	Soil	MGDFSVVLFRPNFMLASEGYPMKAHKNQRLLTLPSPPNLPCGATNQGTYHGVWWADAFAV
Ga0314796_098620_103_288	3300034671	Soil	MGDFSVVLFRPNFMLASEGYPMKAHKNQRLLTLPSPPNLPCGATNQGTCHGVWWADAFAV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099536

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences