NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F099523

Metagenome Family F099523

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099523
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 41 residues
Representative Sequence DLDDFPDIVGGHDIVMPAREPIVVPAAASDGDVVAGSDVEE
Number of Associated Samples 92
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 99.03 %
% of genes from short scaffolds (< 2000 bps) 94.17 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (50.485 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere
(9.709 % of family members)
Environment Ontology (ENVO) Unclassified
(51.456 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(72.816 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.
1MBSR1b_0912.00005530
2JGI1027J11758_128135552
3JGI1027J11758_128144872
4soilL1_100212301
5soilL2_101382851
6soilH1_102907043
7Ga0062593_1025056922
8Ga0062590_1016363672
9Ga0062591_1003285821
10Ga0062594_1011597122
11Ga0070690_1004271272
12Ga0070670_1018223831
13Ga0068869_1014975562
14Ga0070680_1001925832
15Ga0070687_1006849963
16Ga0070661_1015258862
17Ga0070675_1022665542
18Ga0070694_1000087277
19Ga0070694_1002233161
20Ga0070694_1005092213
21Ga0070694_1013352631
22Ga0068853_1021736691
23Ga0068857_1011828453
24Ga0068852_1025178472
25Ga0068859_1022416071
26Ga0068859_1025723082
27Ga0068861_1006401582
28Ga0068861_1015207101
29Ga0068870_108533361
30Ga0068863_1008695061
31Ga0068858_1003488522
32Ga0068860_1009630812
33Ga0075422_100584051
34Ga0068871_1019717651
35Ga0075428_1008525062
36Ga0075428_1014744162
37Ga0075433_113632982
38Ga0068865_1020835143
39Ga0075424_1028550841
40Ga0079219_106404031
41Ga0075419_112163481
42Ga0105251_103956562
43Ga0111539_121593891
44Ga0105245_121854571
45Ga0075418_105945731
46Ga0105247_109102851
47Ga0105243_104519682
48Ga0075423_120014911
49Ga0105241_105402972
50Ga0105241_114841142
51Ga0105248_100968121
52Ga0126307_107944182
53Ga0126308_105909022
54Ga0126312_102564242
55Ga0099796_103606561
56Ga0105239_123700492
57Ga0105239_128096462
58Ga0134124_103582422
59Ga0134127_111167971
60Ga0134122_118848381
61Ga0134123_131853801
62Ga0137363_103772531
63Ga0137378_103877631
64Ga0137366_100300041
65Ga0137390_101638031
66Ga0137358_110780141
67Ga0137407_120605891
68Ga0164302_109185991
69Ga0164309_113607282
70Ga0157378_125113021
71Ga0157372_107828002
72Ga0157375_120735842
73Ga0120188_10197291
74Ga0157377_115156601
75Ga0157379_117443402
76Ga0132256_1011955101
77Ga0132255_1008503221
78Ga0132255_1008619721
79Ga0182009_101473101
80Ga0207710_104639541
81Ga0207647_101711532
82Ga0207647_107961611
83Ga0207660_101955641
84Ga0207694_105254371
85Ga0207659_116557781
86Ga0207701_110444161
87Ga0207670_103088721
88Ga0207704_101577262
89Ga0207711_117008441
90Ga0207651_103150152
91Ga0207668_101598872
92Ga0207678_118773801
93Ga0207676_105137382
94Ga0207675_1013334812
95Ga0209215_10356772
96Ga0268264_104262922
97Ga0310888_100098441
98Ga0307408_1003383891
99Ga0307407_109707912
100Ga0310900_111057671
101Ga0307411_108997813
102Ga0310895_103239572
103Ga0310896_109361992
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
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Original

Variant

510152025303540DLDDFPDIVGGHDIVMPAREPIVVPAAASDGDVVAGSDVEESequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.22
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
49.5%50.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Serpentine Soil
Terrestrial
Soil
Agricultural Soil
Sugarcane Root And Bulk Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Populus Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
6.8%3.9%2.9%3.9%2.9%3.9%3.9%2.9%4.9%9.7%3.9%8.7%2.9%4.9%4.9%2.9%2.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
MBSR1b_0912.000055302162886012Miscanthus RhizospherePDIVGGHDIVLPPREPVVITPASGDGDIVAAPEAEE
JGI1027J11758_1281355523300000789SoilFPDIVGGHDITLPAREPLVVAASDGDGAASSEPEE*
JGI1027J11758_1281448723300000789SoilFPDIVGGHDITLPAREPLVVAASDGDGAAPSEPEE*
soilL1_1002123013300003267Sugarcane Root And Bulk SoilEDFPDIVGGHDIVMPAREPIVVPSAGSDGDVVAGSDGEE*
soilL2_1013828513300003319Sugarcane Root And Bulk SoilARERDLDEFPDIVGGHDIVLPSREPLVVPAGPDGDGASAPEEE*
soilH1_1029070433300003321Sugarcane Root And Bulk SoilRDLDEFPDIVGGHDIVLPPREPVVVPSAGGDGDVVAAPENEE*
Ga0062593_10250569223300004114SoilDQARDRDLEEFPDIVGGHDIVVPPREPIIVPAAAPVDGDGVVAGPDGEE*
Ga0062590_10163636723300004157SoilRERDLDEFPDIVGGHDIVLPTREPIVVSSGNGSGTDSDGDVVAAPESEE*
Ga0062591_10032858213300004643SoilRDRDLEDFPDIVGGHDIVLPTREPAVVASPDGDGAAAVPEVEE*
Ga0062594_10115971223300005093SoilDRDLEDFPDIVGGHDIVLPAREPAVVASADGDGAAAAAPEVEE*
Ga0070690_10042712723300005330Switchgrass RhizosphereDLDDFPDIVGGHDIVMPAREPIVVPAVASDGDGDVVAGSDGEEVS*
Ga0070670_10182238313300005331Switchgrass RhizosphereDQARERDLDEFPDIVGGHDIVLPTREPLVVPAGTDGDGAAAPAAPEDE*
Ga0068869_10149755623300005334Miscanthus RhizosphereDRDLDEFPDIVGGHDIVMPPREPIVVPSVAPADGDGAGSPEGEE*
Ga0070680_10019258323300005336Corn RhizosphereRDLDEFPDIVGGHDIVLPPREPVVIPTVPSDGDVVAAPEAEE*
Ga0070687_10068499633300005343Switchgrass RhizosphereFPDIVGGHDIVLPTREPVIVPAGNDGDGVDGDVVAAPPETEE*
Ga0070661_10152588623300005344Corn RhizosphereDRDLDEFPDIVGGHDIPLPVREPLVVAAASDGDGSAPSEPEE*
Ga0070675_10226655423300005354Miscanthus RhizosphereIDQARERDLDEFPDIVGGHDIVLPTREPLVVSATPVADGDGASAPAPEEE*
Ga0070694_10000872773300005444Corn, Switchgrass And Miscanthus RhizosphereEFPDIVGGHDIVMPPREPVVVPAPASNDGEIVASPDGEE*
Ga0070694_10022331613300005444Corn, Switchgrass And Miscanthus RhizosphereLDEFPDIVGGHDIVVPVREPLVVPSGSSTDGDVVAGSDVEE*
Ga0070694_10050922133300005444Corn, Switchgrass And Miscanthus RhizosphereEFPDIVGGHDIVVPAREPIVVPAASSNDGEVVASSDVVEE*
Ga0070694_10133526313300005444Corn, Switchgrass And Miscanthus RhizosphereLDEFPDIVGGHDIVMPSREPIVVPSAAADGDGAGSPEADE*
Ga0068853_10217366913300005539Corn RhizosphereDQARERELDEFPDIVGGHEIPLPTREPLVIAASDGDGASPPETEE*
Ga0068857_10118284533300005577Corn RhizosphereDDFPDIVGGHDIVMPAREPIVVPAASSDGDVVASPDGEE*
Ga0068852_10251784723300005616Corn RhizosphereDQARERDLDDFPDIVGGHDIVMPAREPIVVPSGNDGDVVAGSDGEE*
Ga0068859_10224160713300005617Switchgrass RhizosphereDEFPDIVGGHDIALPAREPLVVAASDGDGAAPSEPEE*
Ga0068859_10257230823300005617Switchgrass RhizosphereEDFPDIVGGHDIVLPAREPAVVASADGDGAAAAAPEVEE*
Ga0068861_10064015823300005719Switchgrass RhizosphereLDEFPDIVGGHDIVLPPREPVVITPASGDGDVVAAPEAEE*
Ga0068861_10152071013300005719Switchgrass RhizosphereQARDRDLEEFPDIVGGHDIVVPPREPIIVPAAAPADGDGLVAAPDGEE*
Ga0068870_1085333613300005840Miscanthus RhizosphereIVGGHDIVMPAREPIVVPSVASDGDGDVVAAPDGEE*
Ga0068863_10086950613300005841Switchgrass RhizosphereIVGGHDIVLPAREPLVVPAGADGDGATPPPAEEE*
Ga0068858_10034885223300005842Switchgrass RhizosphereDEFPDIVGGHDIALPAREPLVVAASDGDSAAPSEPEE*
Ga0068860_10096308123300005843Switchgrass RhizosphereIVGGHDIVVPAREPIVVPSVASDGDVVTGSDGEE*
Ga0075422_1005840513300006196Populus RhizosphereGRDRDLDEFPDIVGGHEIVLPPREPIVVPAAGPSDGDGVAEPDTDTDE*
Ga0068871_10197176513300006358Miscanthus RhizosphereRERELDEFPDIVGGHDITLPVREPLVVAASDGDGVVPSEPEE*
Ga0075428_10085250623300006844Populus RhizosphereFPDIVGGHDIVLPPREPAVVASAADGDGAAPPEVEE*
Ga0075428_10147441623300006844Populus RhizosphereDEFPDIVGGHDIVMPAREPVVVPAPASNDGEVVAGPDVEE*
Ga0075433_1136329823300006852Populus RhizosphereIDQARERELDEFPDIVGGHDIVLPTREPLVVPAGSDGDGASAPDEE*
Ga0068865_10208351433300006881Miscanthus RhizosphereFPDIVGGHDIVVPVREPIVIPAGTSNDGDVVASPDVEE*
Ga0075424_10285508413300006904Populus RhizosphereDQARERELDEFPDIVGGHDIQLPTREPLVVAASDGDGASPPEPEE*
Ga0079219_1064040313300006954Agricultural SoilARERELDEFPDIVGGHDIVLPTREPLVVSAAPGADGDGAAAPEEE*
Ga0075419_1121634813300006969Populus RhizosphereVGGHDIVLPSREPVIISSGNGNATDGDVVAAPETEE*
Ga0105251_1039565623300009011Switchgrass RhizosphereGGHDIVMPPREPIVVPSAAPADGDGAGSPPDSEE*
Ga0111539_1215938913300009094Populus RhizosphereIVGGHDIVMPPREPVVVPAPASNDGEIVASPDGEE*
Ga0105245_1218545713300009098Miscanthus RhizosphereDRDLEDFPDIVGGHDIVLPAREPAVVSADGDGTGTAPEVEE*
Ga0075418_1059457313300009100Populus RhizosphereEFPDIVGGHDIVLPPREPVVVPSAAGDGDVIAAPETEE*
Ga0105247_1091028513300009101Switchgrass RhizosphereIVGGHDIVVPVREPLVIPAADSSDGDGVVAAPDVEE*
Ga0105243_1045196823300009148Miscanthus RhizosphereDQARERDLDDFPDIVGGHDIVMPAREPIVVPSAASDVDVVAGSDGEE*
Ga0075423_1200149113300009162Populus RhizosphereIVGGHDIVVPAREPIVVPAASSNDGEVVASSDVVEE*
Ga0105241_1054029723300009174Corn RhizosphereVGGHDIVIPAREPIVVPAVSSNDGDVVASPDVEE*
Ga0105241_1148411423300009174Corn RhizosphereRDLDEFPDIVGGHDIVLPPREPVVITPASGDGDVVAAPEAEE*
Ga0105248_1009681213300009177Switchgrass RhizosphereLDEFPDIVGGHDIVLPTREPLVVPAGTDGDGAAAPAAPEDE*
Ga0126307_1079441823300009789Serpentine SoilFPDIVGGHDIVVPAREPVVVPAAASNDGDAAPADAEE*
Ga0126308_1059090223300010040Serpentine SoilERELDEFPDIVGGHDIVVPAREPVVVPAAASNDGDAALPDGEE*
Ga0126312_1025642423300010041Serpentine SoilEFPDIVGGHDIVVPAREPVVIPAAASNDGDAIAAPDVEE*
Ga0099796_1036065613300010159Vadose Zone SoilRELDEFPDIVGGHDIVIPTREPVVVAASDGDVPVPEVEE*
Ga0105239_1237004923300010375Corn RhizosphereEFPDIVGGHDIVMPPREPIVVPSAAPADGDGAGSPDAEE*
Ga0105239_1280964623300010375Corn RhizosphereERDLEEFPDIVGGHDITLPPREPIAVAASDGDGAVLPKSEE*
Ga0134124_1035824223300010397Terrestrial SoilRDLDEFPDIVGGHDIVMPAREPIVVPSVAPVDGDGAGTPDVEE*
Ga0134127_1111679713300010399Terrestrial SoilDQARERDLDDFPDIVGGHDIVVPAREPIVVPSVASDGDGDVVTGSDGEE*
Ga0134122_1188483813300010400Terrestrial SoilIVGGHDIVMPAREPLVVPAGTPSDGEVVAGPEVEE*
Ga0134123_1318538013300010403Terrestrial SoilEFPDIVGGHDIVMPPREPIIVPAAAPADGDGLVAAPDGEE*
Ga0137363_1037725313300012202Vadose Zone SoilLDEFPDIVGGHDIVIPTREPVVVAASDGDVPVPEGEE*
Ga0137378_1038776313300012210Vadose Zone SoilEFPDIVGGHDIVIPTREPVVVATSDGDIPVPEVEE*
Ga0137366_1003000413300012354Vadose Zone SoilEFPDIVGGHDMAIPTREPVVVAGSDGEAAAPALAEPEE*
Ga0137390_1016380313300012363Vadose Zone SoilERELDEFPDIVGGHDIVIPTREPVVVAASDGDAAVPEVEE*
Ga0137358_1107801413300012582Vadose Zone SoilQARERELDEFPDIVGGHDIVIPAREPVVVATTDGDGAAPESEE*
Ga0137407_1206058913300012930Vadose Zone SoilTIDQARERELDEFPDIVGGHEIALPPRSAVIAASGDGTSSDGHE*
Ga0164302_1091859913300012961SoilDEFPDIVGGHDITLPVREPLVVAASDGDGAVPSEPEE*
Ga0164309_1136072823300012984SoilDEFPDIVGGHDIVLPAREPLVVSAGADGDGAAPPAEEE*
Ga0157378_1251130213300013297Miscanthus RhizosphereDLDDFPDIVGGHDIVMPAREPIVVPAAASDGDVVAGSDVEE*
Ga0157372_1078280023300013307Corn RhizosphereDDFPDIVGGHDIVVPAREPIVVPSVASDGDGDVVTGSDGEE*
Ga0157375_1207358423300013308Miscanthus RhizosphereRERDLDEFPDIVGGHDIVLPTREPLVVPAGTDGDGAAAPAAPEDE*
Ga0120188_101972913300013760TerrestrialELDEFPDIVGGHEIVIPPREPVIVPAVASTDGDVVAGSDVEE*
Ga0157377_1151566013300014745Miscanthus RhizosphereGRERDLEEFPDIVGGHDITLPPREPIAVAATDGDGVVPVKPEE*
Ga0157379_1174434023300014968Switchgrass RhizosphereIVGGHDIVMPAREPIVIPAVASDGDGEAAPDGEE*
Ga0132256_10119551013300015372Arabidopsis RhizosphereLEEFPDIVGGHDIVMPPREPIIVPSTASNDGDVLASPDVEE*
Ga0132255_10085032213300015374Arabidopsis RhizosphereERELDEFPDIVGGHEIPLPTREPLVIAATDGDGASPPEPEE*
Ga0132255_10086197213300015374Arabidopsis RhizosphereIDQARERELDEFPDIVGGHDIVLPVREPLVVAAASDGDGAGPSEPEE*
Ga0182009_1014731013300021445SoilDIVGGHDIVLPAREPIVVASAAPVDGDGAISPETEE
Ga0207710_1046395413300025900Switchgrass RhizosphereLEDFPDIVGGHDIVMPAREPIVVPSVASDGDAVAEPDGEE
Ga0207647_1017115323300025904Corn RhizosphereRDRDLEDFPDIVGGHDIVLPAREPAVVASADGDGAAAAAPEVEE
Ga0207647_1079616113300025904Corn RhizosphereERDLDDFPDIVGGHDIVIPAREPIVVPAVASDGDGDAVAEADGEE
Ga0207660_1019556413300025917Corn RhizosphereRDLDEFPDIVGGHDIVLPPREPVVIPTVPSDGDVVAAPEAEE
Ga0207694_1052543713300025924Corn RhizosphereIVGGHDIVMPAREPIVVPSVASDGDGDVVAGSDGEE
Ga0207659_1165577813300025926Miscanthus RhizosphereTIDQARERDLDEFPDIVGGHDIVLPTREPLVVSATPVADGDGASAPAPEEE
Ga0207701_1104441613300025930Corn, Switchgrass And Miscanthus RhizosphereIDQARERDLDEFPDIVGGHDIVLPPREPVVIPTVPSDGDVVAAPEAEE
Ga0207670_1030887213300025936Switchgrass RhizosphereLDDFPDIVGGHDIVVPAREPIVVPSVASDGDGDVVTGSDGEE
Ga0207704_1015772623300025938Miscanthus RhizosphereEDFPDIVGGHDIVLPAREPAVVSADGDGTGTAPEVEE
Ga0207711_1170084413300025941Switchgrass RhizosphereDIVGGHDIVMPAREPIVVPAAASDGDVVAGSDVEE
Ga0207651_1031501523300025960Switchgrass RhizosphereDLEDFPDIVGGHDIVMPAREPIVVPSVASDGDAVAEPDGEE
Ga0207668_1015988723300025972Switchgrass RhizosphereRERELDEFPDIVGGHDIALPAREPLVVAASDGDGAAPSEPEE
Ga0207678_1187738013300026067Corn RhizosphereDLDDFPDIVGGHDIVMPAREPIVIPAVASDGDGEAAADGEE
Ga0207676_1051373823300026095Switchgrass RhizosphereARERDLDDFPDIVGGHDIVMPAREPIVVPSAGSDGDVVAGSDGEE
Ga0207675_10133348123300026118Switchgrass RhizosphereQARERELDEFPDIVGGHDIVMPAREPIVVPAVSANDGDVVASPEVEE
Ga0209215_103567723300027266Forest SoilVGGHDIVLPSREPLVVSATPVADGDGASAPTPDEE
Ga0268264_1042629223300028381Switchgrass RhizospherePDIVGGHDIVMPPREPIIVPAAAPADGDGLVAAPDGEE
Ga0310888_1000984413300031538SoilTIDQGRDRDLEDFPDIVGGHDIVLPAREPAVVATPDGDGAAAAVAPEVEE
Ga0307408_10033838913300031548RhizosphereDIVGGHDIVLPSREPLVVSAGPVADGDGASAPTTEEE
Ga0307407_1097079123300031903RhizosphereEFPDIVGGHDIVLPSREPLVVSAGPVADGDGASAPTTEEE
Ga0310900_1110576713300031908SoilDQGRDRDLEDFPDIVGGHDIVLPAREPAVVASADGDGAAAAAPEVEE
Ga0307411_1089978133300032005RhizosphereDLDEFPDIVGGHDIVVPAREPVVIPAAASNDGDVVAAPDVEE
Ga0310895_1032395723300032122SoilDRDLEDFPDIVGGHDIVLPAREPAVVATPDGDGAAAAVAPEVEE
Ga0310896_1093619923300032211SoilDIVGGHDIVLPAREPAVVASADGDGAAAAAPEVEE


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