NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099510

Metagenome / Metatranscriptome Family F099510

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099510
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 50 residues
Representative Sequence IRWNGRYGNGVRAFTGSYVASVQAANSFGPTELERRFLVRRARH
Number of Associated Samples 93
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 96.12 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (54.369 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(39.806 % of family members)
Environment Ontology (ENVO) Unclassified
(32.039 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(62.136 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.
1ICChiseqgaiiDRAFT_19629971
2ICChiseqgaiiFebDRAFT_109103341
3F14TB_1002578411
4F14TB_1005421151
5Ga0062593_1035186421
6Ga0062589_1001464533
7Ga0063356_1010313811
8Ga0066809_100335003
9Ga0066388_1042445911
10Ga0068868_1018224922
11Ga0070689_1005586321
12Ga0070674_1019509092
13Ga0068867_1019610142
14Ga0068861_1024067672
15Ga0075422_104916472
16Ga0074056_116958211
17Ga0074059_118103571
18Ga0074054_100176373
19Ga0104323_1058633
20Ga0075418_126917201
21Ga0066709_1041577991
22Ga0114129_117385462
23Ga0105243_112731872
24Ga0111538_124143092
25Ga0111538_138399762
26Ga0105242_119416311
27Ga0105072_11318642
28Ga0126313_106682181
29Ga0126304_103763991
30Ga0126315_107252161
31Ga0126382_121563842
32Ga0134109_104265062
33Ga0134084_101845202
34Ga0134080_106500752
35Ga0126372_112179381
36Ga0126377_117269421
37Ga0105239_112333251
38Ga0151490_15713641
39Ga0137374_112253961
40Ga0137380_108012391
41Ga0137369_107346182
42Ga0157354_10893072
43Ga0136635_100082674
44Ga0157293_102575402
45Ga0157299_102051141
46Ga0157310_100211741
47Ga0164299_103292703
48Ga0164301_113572852
49Ga0164309_101289723
50Ga0164304_109229802
51Ga0164304_113825321
52Ga0164307_101020773
53Ga0164307_104445063
54Ga0164305_117817941
55Ga0157380_121082952
56Ga0120193_100884951
57Ga0173480_103052472
58Ga0173478_104559422
59Ga0134089_103466862
60Ga0134089_104188732
61Ga0134074_13779291
62Ga0134083_103388171
63Ga0184618_100014246
64Ga0184628_100854323
65Ga0066667_107962582
66Ga0190270_129052502
67Ga0193696_10731301
68Ga0193738_10782151
69Ga0222622_102479702
70Ga0207663_107455611
71Ga0207678_115523582
72Ga0207708_112188022
73Ga0207698_112316861
74Ga0207428_109625562
75Ga0268265_108649891
76Ga0247821_104064282
77Ga0307322_102173461
78Ga0307313_100620941
79Ga0307313_100948333
80Ga0307301_100497261
81Ga0307301_103165832
82Ga0307317_102330101
83Ga0307319_102719401
84Ga0307320_103297541
85Ga0307320_104275312
86Ga0307288_100528152
87Ga0307288_104572032
88Ga0307299_100635532
89Ga0307287_100351622
90Ga0307284_101222671
91Ga0307284_102250032
92Ga0307281_100871252
93Ga0307292_101059311
94Ga0307296_100024791
95Ga0307312_102193851
96Ga0307278_105456831
97Ga0307500_102005921
98Ga0307495_100172693
99Ga0307505_102390812
100Ga0310813_114646681
101Ga0307469_108347151
102Ga0307405_116569281
103Ga0247829_100295554
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 33.33%    Coil/Unstructured: 66.67%
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Variant

510152025303540IRWNGRYGNGVRAFTGSYVASVQAANSFGPTELERRFLVRRARHSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
54.4%45.6%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Polar Desert Sand
Groundwater Sediment
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Tropical Forest Soil
Serpentine Soil
Grasslands Soil
Terrestrial
Unplanted Soil
Soil
Soil
Grasslands Soil
Hardwood Forest Soil
Soil
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Groundwater Sand
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Populus Rhizosphere
Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
39.8%4.9%2.9%2.9%2.9%6.8%5.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICChiseqgaiiDRAFT_196299713300000033SoilRAGEGSIRWNGRYSSGVRAFAGPYVARVRATNAFGPAELERRFVVRRTR*
ICChiseqgaiiFebDRAFT_1091033413300000363SoilWNGRYGSGIRAFSGPYVASVRAVNSFGPAQLERRFVVRRAR*
F14TB_10025784113300001431SoilSIRWNGRYGSGIRAFSGPYVASVRAVNAFGPSLLERRFLVRRGR*
F14TB_10054211513300001431SoilVRTIQRQLGPGRASIRWNGRYSSGVRAFTGSYLARVRATNXXGPAELERRFVVRRTR*
Ga0062593_10351864213300004114SoilRTIRWNGRYGNGVRAFTGSYVASVQAANSFGPTELERRFLVRRARH*
Ga0062589_10014645333300004156SoilGQMSIRWNGRYANGVRAFAGRYLARVQASNAFGRAELERRFSVRRAGR*
Ga0063356_10103138113300004463Arabidopsis Thaliana RhizosphereTASGARVRTIRRRLGAGQMTVRWNGRYGNGTRAFSGPYVARVETSNAFGRAELERRFLVRRTRR*
Ga0066809_1003350033300005168SoilGRVKTIRRRLGSGQRTIRWNGRYGNGVRAYTGAYVASVQAANSFGPMELERRFLVKRARR
Ga0066388_10424459113300005332Tropical Forest SoilIRRRLGTGARMIRWNGLYGNGVRAFTGSYTANVRAANSFGPSELERRFLVRRARR*
Ga0068868_10182249223300005338Miscanthus RhizosphereGRGRKSIRWNGFYGNGVRAYSGTYIARVQTSNTFGPAQLERRFFVRRARH*
Ga0070689_10055863213300005340Switchgrass RhizosphereRWNGFYGNGVRAYSGTYIARVQTSNTFGPAQLERRFFVRRARH*
Ga0070674_10195090923300005356Miscanthus RhizosphereTTSIRWNGRYGSGISAFSGPYVASVRAVNAFGPTLLERRFRVLRGR*
Ga0068867_10196101423300005459Miscanthus RhizosphereLRAGQTSIRWNGRYGNGVRAFSGSYIAQVQTSNAFGPAKLERRFFVRRARR*
Ga0068861_10240676723300005719Switchgrass RhizosphereSGRRVRTIRRRLEAGQMSIRWNGRYANGIRAFTGPYVARVLASNELGRTELKRRFSVRRARR*
Ga0075422_1049164723300006196Populus RhizosphereTSHRRFRAGRASMRWNGRYGSGVRAFSGPYVASLRAVNSFGPAQLERRFAVRRGR*
Ga0074056_1169582113300006574SoilVKTIRRRLGSGRRTIQWDGRYGNGVRAYTGSYVASVQAANSFGPTELERRFLVRRARH*
Ga0074059_1181035713300006578SoilIRWNGRYGNGVRAFTGSYVASVQAANSFGPTELERRFLVRRARH*
Ga0074054_1001763733300006579SoilGRYGNGVRAFTGSYVASVQAANSFGPTELERRFLVRRARH*
Ga0104323_10586333300007821SoilGARVRTIRQRHRAGQTSIRWDGRYGNGVRAFSGPYVARVQTTNAFGRSELTRNFSVRRARR*
Ga0075418_1269172013300009100Populus RhizosphereTSIRWNGRYSSGVRAFAGPYVARVRASNAFGPAELERRFVVRRTR*
Ga0066709_10415779913300009137Grasslands SoilIRWNGRYGSGVRAFSGPYVASVRAVNAFGPTLLERRFLVRRGR*
Ga0114129_1173854623300009147Populus RhizosphereITRKLGKGQKSIRWNGRYGNGARAFSGPYVARVSTSNAFGPAELERRFVVRRASR*
Ga0105243_1127318723300009148Miscanthus RhizosphereVRVRTIRQRRRAGQTTIRWNGRYANGARAFSGPYVARVQTSNAFGRAELKRRFSVRRARR
Ga0111538_1241430923300009156Populus RhizosphereGPGRTSIRWNGRYSGGVRAFAGPYVARVRASNAFGPAELERRFVVRRTR*
Ga0111538_1383997623300009156Populus RhizosphereRYGSGIRAFSGPYVASVRAVNAFGPAQLERRFVVRRAR*
Ga0105242_1194163113300009176Miscanthus RhizosphereVHRRFRAGRASMRWNGRYGSGVRAFSGPYVASLRAVNSFGPSQLERRFAVRRVR*
Ga0105072_113186423300009818Groundwater SandGQKSIRWNGRYGNGVRAFSGPYVAKVRTSNSFGPSELERRFSVRRARR*
Ga0126313_1066821813300009840Serpentine SoilTTSIRWNGRYGSGIRAFSGPYVASVRAVNSFGPAQLERRFVVRRGR*
Ga0126304_1037639913300010037Serpentine SoilIRWDGRYGNGDRAFSGRYIARVQTANAFGPAELERRFFVRRARH*
Ga0126315_1072521613300010038Serpentine SoilNGRYVSGVRAFSGPYVASVRAVNAFGPAELERKFVVRRGR*
Ga0126382_1215638423300010047Tropical Forest SoilRRSIRWNGFYGNGVRAFSGPYTVRVQAANAFGPSELEHRFLVRRARR*
Ga0134109_1042650623300010320Grasslands SoilGNGVRALSGSYVASVQAANSFGPTELERRFLVKRARR*
Ga0134084_1018452023300010322Grasslands SoilWNGLYGNGVRALSGSYVASVQAANSFGPTELERRFLVKRARR*
Ga0134080_1065007523300010333Grasslands SoilRNARGGRVKTIRRSLGVGSRMIRWNGLYGNGVRAFSGSYVASVQAANSFGRAELTHRFFVRRTRR*
Ga0126372_1121793813300010360Tropical Forest SoilLGAGTTSIRWNGRYGSGIRAFSGPYVASVKAVNAFGPSMLERRFRVLRGR*
Ga0126377_1172694213300010362Tropical Forest SoilQTIRRRLSAGTTSIRWNGRYGSGIRAFSGPYVAIVRAVNAFGPAELERRFVVRRAR*
Ga0105239_1123332513300010375Corn RhizosphereRRTIRWNGRYGNGVRAFTGAYVASVQAANSFGPTQLERRFLVRRARH*
Ga0151490_157136413300011107SoilIRRRLGSGRRTIQWDGRYGNGVRAYTGSYVASVQAANSFGPMELERRFLVKRARR*
Ga0137374_1122539613300012204Vadose Zone SoilETASGARVRTIQRRLGRGRMSIRWDGRYGNGVRAFSGPYVARVRTSNTFGRAELASRFSVRRARR*
Ga0137380_1080123913300012206Vadose Zone SoilTVRTLRRRLRAGQRSIDWNGRYGNGVRAFSGSYVARVRTTNTFGPAELMRRFSVRRARH*
Ga0137369_1073461823300012355Vadose Zone SoilRVKTIRRRLGSGQRTIRWNGLYGNGVRAFTGSYVASVQAANSFGPTELERRFLVKRARR*
Ga0157354_108930723300012517Unplanted SoilTTSIRWNGRYGSGIRAFSGPYVASVRAVNAFGPTSLERRFRVLRGR*
Ga0136635_1000826743300012530Polar Desert SandARVRTIRQRRRAGQTSIRWNGRYANGVRAFSGSYVARVTTSNRFGVSELERRFLVRRARR
Ga0157293_1025754023300012898SoilYGNGVRAFSGGYVATVRASNAFGPAELERPFAVRRTR*
Ga0157299_1020511413300012899SoilRWNGRYGNGVRAFSGGYVVSVRTSNAFGPAELERASAVRRTR*
Ga0157310_1002117413300012916SoilTSLRWNGRYGNGVRAFSGGYVATVRASNAFGPAELERPFAVRRTR*
Ga0164299_1032927033300012958SoilGAGGRTIRWNGLYGNGVRAYTGSYVASVQAANSFGPTQLERRFLVKRARR*
Ga0164301_1135728523300012960SoilGGRVKTIRRRLGSGQRTISWDGRYGNGVRVFTGSYLASVQAANSFGPTQLERRFLVKRARR*
Ga0164309_1012897233300012984SoilAGTASIRWNGRYGSGIRAFSGPYVASVRAVNAYGPTLLERQFRVLRSR*
Ga0164304_1092298023300012986SoilHLGSGSRTIRWNGRYGNGVRAFTGSYVASVQAANSFGPTELERRFLVRRARH*
Ga0164304_1138253213300012986SoilTIRNARGGRVKTMRRRLGSGHRTVRWNGRYGNGVRAFTGAYVASVQAANSFGPTELERRFLVKRARR*
Ga0164307_1010207733300012987SoilIRWNGRYGSGIRAFSGPYVASVRAVNAYGPTLLERQFRVLRSR*
Ga0164307_1044450633300012987SoilWNGRYGNGVRAFTGSYVASVQAANSFGPTELERRFLVRRARH*
Ga0164305_1178179413300012989SoilPAVVTVTIRNARGGRVKTIRRRLGSGSRTIRWNRRYGNGVRAFTGSYVASVQAANSFGPTELERRFLVRRARH*
Ga0157380_1210829523300014326Switchgrass RhizosphereVRTIRQRRRAGQVSIRWNGRYANGARAFSGPYVARVQTSNAFGRAELKRRFSVRRARR*
Ga0120193_1008849513300014965TerrestrialIPRRPGRGRKSIRWNGRYGNGVRAFSGPYVARVRTSNAFGLSELERRFLVRRARR*
Ga0173480_1030524723300015200SoilQRRLRAGQTSLRWNGRYGNGVRAFSGGYVATVRASNAFGPAELERPFAVRRTR*
Ga0173478_1045594223300015201SoilAGQTSLRWNGRYGNGVRAFSGGYVVSVRASNAFGPAELERAFAVRRSR*
Ga0134089_1034668623300015358Grasslands SoilAGMTSIRWNGRYGSGVRAFSGPYVASVRAVNAFGSAQLERRFLVRRGR*
Ga0134089_1041887323300015358Grasslands SoilGRYGNGIRAFSGPYVARVQTSNAIGRAELQRRFSVRRARR*
Ga0134074_137792913300017657Grasslands SoilGVGSRMIRWNGLYGNGVRAFSGSYVASVQAANSFGPTELERRFLVKRARR
Ga0134083_1033881713300017659Grasslands SoilRLGAGKRTIRWNGLYGNGVRAYTGSYVASVQAANAYGPTELERRFLVKRARR
Ga0184618_1000142463300018071Groundwater SedimentYGNGVRAFSGPYVARVKTTNSFGRAELQRRFSVRRTSR
Ga0184628_1008543233300018083Groundwater SedimentRRLGSGRRTIRWDGRYGNGVRAYTGSYVASVQAANSFGPTELERRFLVRRARH
Ga0066667_1079625823300018433Grasslands SoilGSIRWNGRYGNGVRAFSGTYVARVQTSNSFGRAELTHRFFVRRTRR
Ga0190270_1290525023300018469SoilIRWNGRYGNGVRAFSGPYVARLSTSNSFGPSELERRFVVRRARR
Ga0193696_107313013300020016SoilRRKLRAGTTSIRWNGRYGSGISAFSGPYVASVRAVNAFGPTLLERRFQVRRGR
Ga0193738_107821513300020020SoilSIRWNGVYGNGVRASSGLYLARVQAANAFGPAELERRFLVRRARR
Ga0222622_1024797023300022756Groundwater SedimentWNGRYGSGISAFSGPYVASVRAVNAFGPTLLERRFQVRRGR
Ga0207663_1074556113300025916Corn, Switchgrass And Miscanthus RhizosphereTIRRRLGSGQRTIRWNGRYGNGVRAFTGSYVASVQAANSFGPTELERRFLVRRARH
Ga0207678_1155235823300026067Corn RhizosphereRYGNGVRAASGRYIAQVQTSNAFGPAKLERRFFVRRARR
Ga0207708_1121880223300026075Corn, Switchgrass And Miscanthus RhizosphereKRLRAGQTSIRWNGRYGNGVRAFSGSYIAQVQTSNAFGPAKLERRFFVRRARR
Ga0207698_1123168613300026142Corn RhizosphereIRRYLGRGRKSIRWNGFYGNGVRAYSGTYIARVQTSNTFGPAQLERRFFVRRARH
Ga0207428_1096255623300027907Populus RhizosphereGRYSSGVRAFAGPYVARVRATNAFGPAELERRFVVRRTR
Ga0268265_1086498913300028380Switchgrass RhizosphereGQATIRWNGRYANGARAFSGPYVARVQTSNAFGRAELKRRFSVRRARR
Ga0247821_1040642823300028596SoilGFYGNGVRAFSGPYSVRVQAANAFGPSELERRFLVRRARR
Ga0307322_1021734613300028710SoilRAGQTSIRWNGRYGNGVRAFSGPYIAQVQTSNAFGPAKLERRFFVRRARR
Ga0307313_1006209413300028715SoilRYGNGVRAFSGPYVARVKTTNSFGRAELQRRFSVRRTSR
Ga0307313_1009483333300028715SoilWDGRYGNGVRAYTGSYVASVQAANSFGPTELERRFLVRRARH
Ga0307301_1004972613300028719SoilRKGQTSIRWNGRYGNGVRAFSGSYIARVQTSNAFGPAELERRFFVRRARG
Ga0307301_1031658323300028719SoilKRLRAGQTSIRWNGRYGNGVRAFSGPYIAQVQTSNAFGPAKLERRFFVRRARR
Ga0307317_1023301013300028720SoilWNGRYGNGVRAFSGSYIARVQTSNAFGPAELERRFFVRRARG
Ga0307319_1027194013300028722SoilKLRAGTTSIRWNGRYGSGISAFSGPYVASVRAVNAFGPTLLERRFQVRRGR
Ga0307320_1032975413300028771SoilVRTIRKRLRAGQTSIRWNGRYGNGVRAFSGPYIAQVQTSNAFGPAKLERRFFVRRARR
Ga0307320_1042753123300028771SoilVRTIRQRSRAGQMSIRWNGRYANGARAFSGSYVARVQTSNAFGPAELKRRFSVRRARR
Ga0307288_1005281523300028778SoilSGTTSIRWNGRYGSGISAFSGPYVASVRAVNAFGPTLLERRFQVHRGR
Ga0307288_1045720323300028778SoilRTIRRRLRTGKTSIRWNGRYGNGVRAFSGAYVAQVRTSNALGPAELERNFVVRRRR
Ga0307299_1006355323300028793SoilNGRYGSGISAFSGPYVASVRAVNAFGPTLLERRFQVRRGR
Ga0307287_1003516223300028796SoilVQTVRRKLRAGTTSIRWNGRYGSGISAFSGPYVASVRAVNAFGPTLLERRFQVRRGR
Ga0307284_1012226713300028799SoilIRWNGRYGNGVRAFSGAYVAQVRTSNALGPAELERDFVVRRRR
Ga0307284_1022500323300028799SoilIRNARGGRVKTIRRRLGSGRRTIRWDGRYGNGVRAYTGSYVASVQAANSFGPTELERRFLVRRARH
Ga0307281_1008712523300028803SoilRYGSGISAFSGPYVASVRAVNAFGPTLLERRFQVRRGR
Ga0307292_1010593113300028811SoilRTMRRRLRAGQTSIRWNGRYGNGVRAFSGPYVARVKTTNSFGRAELQRRFSVRRTSR
Ga0307296_1000247913300028819SoilSGATVRTMRRRLRAGQTSIRWNGRYGNGVRAFSGPYVARVKTTNSFGRAELQRRFSVRRTSR
Ga0307312_1021938513300028828SoilYGNGVRAFSGPYVARVQTSNSFGRAELERHFSVRRARR
Ga0307278_1054568313300028878SoilDGRYGNGVRAFSGPYVARVRTSNTFGRAELTRRFSVRRARR
Ga0307500_1020059213300031198SoilIQWDGRYGNGVRAFTGSYVANVQAANSFGPTQLERRFLVRRARH
Ga0307495_1001726933300031199SoilNGVRAFTGSYVANVQAANSFGPTQLERRFLVRRARH
Ga0307505_1023908123300031455SoilIRWNGRYGSGISAFSGPYVASVRAVNAFGPTLLERRFQVRRGR
Ga0310813_1146466813300031716SoilRRKLRAGTTSIRWNGRYGSGIRAFSGPYVASVRAVNAFGPTSLERRFRVLRGR
Ga0307469_1083471513300031720Hardwood Forest SoilRKLRSGTTSIRWNGRYGSGISAFSGPYVASVRAVNAFGPTLLERRFQVRRGR
Ga0307405_1165692813300031731RhizosphereLGRGQRSIRWNGRYGNGVRAFSGPYVARIRTTNAFGPSELERRFLVRRARR
Ga0247829_1002955543300033550SoilSGAGRRSIRWNGFYGNGVRAFSGPYSVRVQAANAFGPSELERRFLVRRARR


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