NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099444

Metagenome / Metatranscriptome Family F099444

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099444
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 54 residues
Representative Sequence MSYTKNETALLNFQNDISKLFYYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDS
Number of Associated Samples 67
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 88.89 %
% of genes near scaffold ends (potentially truncated) 1.94 %
% of genes from short scaffolds (< 2000 bps) 17.48 %
Associated GOLD sequencing projects 62
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (79.612 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(37.864 % of family members)
Environment Ontology (ENVO) Unclassified
(85.437 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(97.087 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76
1ACM22_11389563
2JGI25128J35275_10767461
3JGI26064J46334_10113783
4INDIC_18184241
5Ga0066845_1000136317
6Ga0066845_100453523
7Ga0066845_102366481
8Ga0066830_100180901
9Ga0066830_100855672
10Ga0066865_101325072
11Ga0066835_100120789
12Ga0066835_100296044
13Ga0066840_100179323
14Ga0066840_100715761
15Ga0066840_100902331
16Ga0066840_101430252
17Ga0066377_101135301
18Ga0066364_100602715
19Ga0066370_101512282
20Ga0066370_102460762
21Ga0066370_102673651
22Ga0068468_10686235
23Ga0068468_10994415
24Ga0068468_11253601
25Ga0068486_10775771
26Ga0068486_13857051
27Ga0068500_11076475
28Ga0099675_107914410
29Ga0099693_10213634
30Ga0099693_131023612
31Ga0099693_14517813
32Ga0099693_14777156
33Ga0099954_12944083
34Ga0099954_15113151
35Ga0099963_10220874
36Ga0099963_13388631
37Ga0099963_14133592
38Ga0100226_10153994
39Ga0100226_10244124
40Ga0101666_10792282
41Ga0115012_109315352
42Ga0115012_114038713
43Ga0138383_12399721
44Ga0160422_108391941
45Ga0160423_103260002
46Ga0163110_101182525
47Ga0163110_109184863
48Ga0163110_111908163
49Ga0163180_100761628
50Ga0163180_103199092
51Ga0163180_105835181
52Ga0163180_106992712
53Ga0163180_117478922
54Ga0163179_1003532211
55Ga0163179_121215421
56Ga0211707_10013372
57Ga0211584_10052295
58Ga0211584_10134566
59Ga0211586_10054145
60Ga0211588_10046853
61Ga0211483_100154341
62Ga0211471_10493782
63Ga0211474_10052513
64Ga0211490_10090846
65Ga0211628_10523161
66Ga0211589_10553072
67Ga0211589_10619283
68Ga0211597_10087904
69Ga0211489_101983072
70Ga0211703_101062442
71Ga0211672_102507203
72Ga0211647_100226935
73Ga0211699_101183031
74Ga0211557_104192561
75Ga0211512_100506751
76Ga0211580_1000022325
77Ga0211565_100177227
78Ga0211565_105054342
79Ga0211708_101590004
80Ga0211576_103841471
81Ga0211576_106803102
82Ga0211695_100150132
83Ga0211638_104169371
84Ga0211473_1000972613
85Ga0211473_100158877
86Ga0211473_106880471
87Ga0211535_101604853
88Ga0211546_100915781
89Ga0211546_100939108
90Ga0211577_1000132721
91Ga0226836_106153241
92Ga0209348_10729752
93Ga0209348_11899343
94Ga0209645_100511516
95Ga0208878_10232303
96Ga0208451_10067892
97Ga0208405_10326392
98Ga0208405_10436953
99Ga0135227_10444311
100Ga0183748_10662072
101Ga0183757_100204716
102Ga0073989_132782623
103Ga0315331_107386541
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 71.43%    β-sheet: 0.00%    Coil/Unstructured: 28.57%
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Variant

510152025303540455055MSYTKNETALLNFQNDISKLFYYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDSSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
20.4%79.6%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Marine
Seawater
Marine Plankton
Marine Oceanic
Marine
Surface Seawater
Seawater
Marine
Seawater
Marine
Hydrothermal Vent Fluids
Marine Harbor
Volcanic Co2 Seep Seawater
27.2%6.8%15.5%3.9%37.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ACM22_113895633300001846Marine PlanktonMSYTKNELAVIDLISDINKLFSYVGEEDDQIAFDSLKQFEKYCVKFVNAIEVEQ*
JGI25128J35275_107674613300002488MarineMSYTRNERALLNLQNDINKLFDYVGEENDQIPFTSLRTFEKACVTFVN
JGI26064J46334_101137833300003185MarineMSYTKNEEALLNLQNDIGKLFSYVGEEDDLIPVYSLRQFEKACVRFVNAIECCDE*
INDIC_181842413300003475MarineMSYTKNEQALLNLQNDINKLFYYVGEEDDQIPVWSLKKFEKACVTFVNAIECCE*
Ga0066845_10001363173300005432MarineMSYTKNEEALLNLQNDINKLFYYVGEEDDQIPVWSLRKFEKACVTFVNAIECCE*
Ga0066845_1004535233300005432MarineMSYTKNETALLNFQNDISKLFYYVGEEDDQIPFSFLRQFERYCIAFVNAIEVEEDS*
Ga0066845_1023664813300005432MarineLINFQSDINKLFYYVGEENDQIPFESLKKFEKYCINFVNTIEVEQ*
Ga0066830_1001809013300005433MarineMSYTKNETALLNFQNDISKLFDYVGEEDDQIPFSSLRKFERYCIAFINAIEVEED
Ga0066830_1008556723300005433MarineMSYTKNETALLNFQNDISKLFYYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDS*
Ga0066865_1013250723300005523MarineMSYTKNEQALLNLQNDIGKLFSYVGEEDDLIPVYSLRQFEKACVTFVNAIECCDE*
Ga0066835_1001207893300005606MarineMSYTKNEAALLNFQNDISKLFYYVGEEDDQIPFSSLRKFERYCIAFINAIEVEEDN*
Ga0066835_1002960443300005606MarineMSDYTKNELALLNLTNDISKLFYYVGEEDDSIPVSSLKKFEQYCVKFVNAIEVDHDE*
Ga0066840_1001793233300005608MarineMSYTKNEEALLNLQNDINKLFYYVGEEDDQIPVWSLRKFEKACVTFVNAIECCE**
Ga0066840_1007157613300005608MarineMSYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFERYCIAFINAIEVE
Ga0066840_1009023313300005608MarineMSDYTKNELALLNLTNDISKLFYYVGEEDDSIPVSSLKKFEQYCVKFVNAIEVDHNE*
Ga0066840_1014302523300005608MarineMSYTKNEAALLNFQNDISKLFDYVGEEDDQIPFSSLRTFERYCIAFINAIEVEEDS*
Ga0066377_1011353013300005934MarineMSYTKNELALINFQSDINKLFYFVGEENDQIPFEYLKKFEKYCINFVNTIEVEQ*
Ga0066364_1006027153300005960MarineMSYTKNELAVIDLINDINKLFYYVGEDDDQIPFESLKQFEKYCVKFVNAIEVEQ*
Ga0066370_1015122823300005971MarineMSYTKNEVALETLISDINKLFYYVGEENDQIPFESLKQFEKYCINFVNTIEVEQ*
Ga0066370_1024607623300005971MarineMSYTKNEVALETLISDINNLFYFVGEENDQIPIEFLKKFEKYCINFVNTIEVEQ*
Ga0066370_1026736513300005971MarineMNDYTKNELALINFQSDINKLFYYVGEEDDQIPFESLKQFEKYCVKFVNAIEVEQ*
Ga0068468_106862353300006305MarineMSEYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDS*
Ga0068468_109944153300006305MarineMSEYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIRFINSIEVEEDD*
Ga0068468_112536013300006305MarineGVCSKMSEYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIRFINSIEVEEDD*
Ga0068486_107757713300006329MarineMSEYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIRFINSI
Ga0068486_138570513300006329MarineNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIRFINSIEVEEDD*
Ga0068500_110764753300006332MarineMSYTKNEEALLNLQNDIGKLFSYVGEEDDLIPFYSLRQFEKACVRFVNAIECCDE*
Ga0099675_1079144103300006334MarineMSEYTKNEAALLDFQHDVGKLFSYVGEEDDQIPFSSLRKFEKYCITFINSIEVMEDD*
Ga0099693_102136343300006345MarineMSYTKNELALIDFQSDINKLFDYVGEEDDQIPFESLKTFEKYCVKFVNAIEVEQ*
Ga0099693_1310236123300006345MarineMSYTKNETALLNFQNDINKLFDYVGEEDDQIPFSSLRTFEKYCIAFINAIEVEEDN*
Ga0099693_145178133300006345MarineMSYTKNELAVIDLISDINKLFSYVGEEDDQIDFEDLRQFEKYCVKFVNAIEVEQ*
Ga0099693_147771563300006345MarineNELAVIDLISDINKLFSYVGEDDDQIHFEALKQFEKYCVKFVNAIEVEQ*
Ga0099954_129440833300006350MarineMSEYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCITFINSIEVMEDD*
Ga0099954_151131513300006350MarineMSYTKNETALLNFQNDINKLFDYVGEEDDQIPFSSLRKFEKYCI
Ga0099963_102208743300006413MarineMSEYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCITFINSIEVEEDD*
Ga0099963_133886313300006413MarineMSYTKNETALLNFQNDINKLFDYVGEEDDQIPFSSLRTFEKYCIAFINAIEVEEDS*
Ga0099963_141335923300006413MarineMSYTKNEIALETFISNVNSFFYYVGEENDQIPFESLKQFEKYCVKFVNAIEVEQ*
Ga0100226_101539943300006480MarineMSEYTKNEAALLDFQHDVSKLFSYVGEEDDQIPFSSLRKFEKYCIRFINSIEVEEDD*
Ga0100226_102441243300006480MarineAVIDLINDINKLFYYVGEDDDQIPFESLKQFEKYCVKFVNAIEVEQ*
Ga0101666_107922823300007113Volcanic Co2 Seep SeawaterMSYTKNEVALETLISDINYLFYFVGEENDQIPFEYLKKFEKYCINFVNTIEVEQ*
Ga0115012_1093153523300009790MarineMSYTKNEVALETLISDINKLFYYVGEEDDQIPFESLKKFEKYCINFVNTIEVEQ*
Ga0115012_1140387133300009790MarineMNDYTKNELALINFQSDINKLFYYVGEEDDQIPFESLKTFEKYCVKFVNAIEVEQ*
Ga0138383_123997213300011330MarineFIGVCSKMSYTKNETALLNFQNDISKLFYYVGEEDDLIPFSSFRKFEKYCIAFINAIEVEEDS*
Ga0160422_1083919413300012919SeawaterSDINKLFSYVGEENDQIDFDDLKQFEKYCVKFVNAIEVEQ*
Ga0160423_1032600023300012920Surface SeawaterMSYTKNELALIDFQSDINKLFYYVGEENDQIPFESLKKFEKYCINFVNTIEVEQ*
Ga0163110_1011825253300012928Surface SeawaterMSYTKNELALINLQSDINKLFDYVGEENDQIPFDSLRKFEKACVAFVNAIEVCEA*
Ga0163110_1091848633300012928Surface SeawaterMSYTKNETALLNFQNDISKLFYYVGEEDDQIPFSSLRQFERYCIAFVNAIEVEEDS*
Ga0163110_1119081633300012928Surface SeawaterMSYTKNETALLNFQNDISKLFYYVGEEDDQIPFSSLRTFEKYCIAFINAIEVEEDS*
Ga0163180_1007616283300012952SeawaterMSDYTKNELALLDLTNDINKLFDYVGEEDDLIPVSSLKKFEQYCVKFVNAIEVDHDE*
Ga0163180_1031990923300012952SeawaterMSYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDD*
Ga0163180_1058351813300012952SeawaterKMSYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDD*
Ga0163180_1069927123300012952SeawaterMSYTKNEEALLNLQNDIGKLFSYVGEEDDLIPVYSLRQFEKACVRFVNAIECCDA*
Ga0163180_1174789223300012952SeawaterMSYTKNETALLNLQNDISKLFYYVGEEDDQIPFSSLRKFEKYCITFINAFEVEEDS*
Ga0163179_10035322113300012953SeawaterMSDYTKNELALLDLTNDINKLFDYVGEEDDLIPVSSLKKFEQYCVKFVNTIEVDQNG*
Ga0163179_1212154213300012953SeawaterMSYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIAFINA
Ga0211707_100133723300020246MarineMSEYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDS
Ga0211584_100522953300020248MarineMSYTKNEQALLNLQNDINKLFYYVGEEDDQIPVWSLKKFEKACV
Ga0211584_101345663300020248MarineLLNLQNDINKLFYYVGEEDDQIPVWSLKKFEKACVTFVNAIECCE
Ga0211586_100541453300020255MarineMSYTKNEQALLNLQNDINKLFYYVGEEDDQIPVWSLKKFEKACVTFVNAIECCEX
Ga0211588_100468533300020260MarineMSYTKNEEALLNLQNDIGKLFSYVGEEDDLIPVYSLRQFEKACVTFVNAIECCE
Ga0211483_1001543413300020281MarineMSYTKNEQALLNLQNDINKLFYYVGEEDDQIPVWSLKKFEKACVTFVNAIECCE
Ga0211471_104937823300020287MarineMSYTKNELALINFQSDINKLFYYVGEENDQIPFESLKKFEKYCINFVNTIEVEQ
Ga0211474_100525133300020296MarineMSYTRNERALLNLQNDINKLFDYVGEENDQIPFTSLRTFEKACVAFVNAIEVES
Ga0211490_100908463300020297MarineMSDYTKNELALIDFQSDINKLFYYVGEEDDQIPFESLKQFEKYCVKFVNAIEVEQ
Ga0211628_105231613300020311MarineMSYTKNETALLNLQNDISKLFYYVGEEDDQIPFSSLRKFEKYCITFINAIEVEEDN
Ga0211589_105530723300020315MarineMSYTKNELALINFQSDINKLFYYVGEENDQIPFESLKQFEKYCVKFINTIEVEQ
Ga0211589_106192833300020315MarineMSEYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIRFINSIEVEEDD
Ga0211597_100879043300020320MarineMSYTKNEEALLNLQNDIGKLFSYVGEEDDLIPVYSLRQFEKACVTFVNAIECCEX
Ga0211489_1019830723300020366MarineMSYTKNETALLNFQNDISKLFYYVGEEDDQIPFSSLRKFEKYCIA
Ga0211703_1010624423300020367MarineMSYTKNEVALETLMSDINKLFYYVGEENDQIPFESLKQFEKYCINFVNTIEVEQ
Ga0211672_1025072033300020370MarineMSYTKNETALLNLQNDISKLFYYVGEEDDQIPFSSLRKFEKYCITFINAIEVEEDS
Ga0211647_1002269353300020377MarineMSYTKNELALINLQSDINKLFDYVGEENDQIPFDSLRKFEKACVAFVNAIEVCEA
Ga0211699_1011830313300020410MarineMSYTKNEVALETLISDINNLFYFVGEEDDQIPFEYLKKFEKYCINFVNTIEVEQ
Ga0211557_1041925613300020418MarineEXNLLVPIPXTXFIGVCSKMSYTKNETALLNFQNDISKLFYYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDS
Ga0211512_1005067513300020419MarineDINKLFDYVGEEDDLIPVSSLKKFEQYCVKFVNAIEVDHDE
Ga0211580_10000223253300020420MarineMSDYTKNELALLNLTNDISKLFYYVGEEDDSIPVSSLKKFEQYCVKFVNAIEVDHDE
Ga0211565_1001772273300020433MarineMSYTKNETALLNFQNDISKLFDYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDS
Ga0211565_1050543423300020433MarineMSYTKNEVALETLISDINNLFYFVGEDDDQIPFEYLKKFEKYCINFVNTIEVEQ
Ga0211708_1015900043300020436MarineMSYTKNEVALETLISDINNLFYFVGEENDQIPIEFLKKFEKYCINFVNTIEVEQ
Ga0211576_1038414713300020438MarineMSYTRNERALLNLQNDINKLFDYVGEENDQIPFTSLRTFEKACVTFVNAIEVES
Ga0211576_1068031023300020438MarineMSDYTKNELALLNLTNDISKLFYYVGEEDDSIPVSSLKKFEQYCVKFVNT
Ga0211695_1001501323300020441MarineMSYTKNEEALLNLQNDIGKLFSYVGEEDDLIPVYSLRQFEKACVRFVNAIECCDE
Ga0211638_1041693713300020448MarineELALIDLIGDINKLFYYVGEENDQIPFESLKQFEKYCVKFINTIEVEQ
Ga0211473_10009726133300020451MarineMSDYTKNELALLDLTNDINKLFDYVGEEDDLIPVSSLKKFEQYCVKFVNAIEVDHDE
Ga0211473_1001588773300020451MarineMSYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDD
Ga0211473_1068804713300020451MarineALIDFQSDINKLFYYVGEEDDQIPFESLKTFEKYCIKFVNAIEVEQ
Ga0211535_1016048533300020461MarineMSYTKNELAVIDLINDINKLFYYVGEDDDQIPFESLKQFEKYCVKFVNAIEVEQ
Ga0211546_1009157813300020462MarineNDINKLFDYVGEEDDLIPVSSLKKFEQYCVKFVNAIEVDHDE
Ga0211546_1009391083300020462MarineNDINKLFDYVGEEDDLIPVSSLKKFEQYCVKFVNTIEVDQNG
Ga0211577_10001327213300020469MarineMSDYTKNELALLNLTNDISKLFYYVGEEDDSIPVSSLKKFEQYCVKFVNTIEVDHNE
Ga0226836_1061532413300021792Hydrothermal Vent FluidsMSEYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIRFINSIEIEEDD
Ga0209348_107297523300025127MarineMSYTKNEQALLNLQNDIGKLFSYVGEEDDLIPVYSLRQFEKACVTFVNAIECCDE
Ga0209348_118993433300025127MarineSITNKSQMSDYTKNELALLNLTNDISKLFYYVGEEDDSIPVSSLKKFEQYCVKFVNAIEVDHNE
Ga0209645_1005115163300025151MarineMSYTKNEEALLNLQNDINKLFYYVGEEDDQIPVWSLRKFEKACVTFVNAIECCE
Ga0208878_102323033300026083MarineMSYTKNELALINFQSDINKLFYFVGEENDQIPFEYLKKFEKYCINFVNTIEVEQ
Ga0208451_100678923300026103Marine OceanicMSYTKNEEALLNLQNDIGKLFSYVGEEDDLIPVYSLRQFEKACVRFVNAIECCDEX
Ga0208405_103263923300026189MarineMSYTKNEQALLNLQNDIGKLFSYVGEEDDLIPVYSLRQFEKACVTFVNAIECCDEX
Ga0208405_104369533300026189MarineMSYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFERYCIAFINAIEVEEDS
Ga0135227_104443113300029302Marine HarborMSYTKNELALIDFQSDINKLFYYVGEEDDQIPFESLKTFEKYCVKFVTAGS
Ga0183748_106620723300029319MarineMSYTKNETALLNFQNDISKLFYYVGEEDDQIPFSSLRTFEKYCIAFINAIEVEEDS
Ga0183757_1002047163300029787MarineMSDYTKNELALLDLTNDINKLFDYVGEEDDLIPVSSLKKFEQYCVKFVNTIEVDQNG
Ga0073989_1327826233300031062MarineALIDFQSDINKLFYYVGEEDDQIPFESLKTFEKYCVKFVNAIEVEQ
Ga0315331_1073865413300031774SeawaterWTLTHYNSIIANKSQMSDYTKNELALLNLTNDISKLFYYVGEEDDSIPVSSLKKFEQYCVKFVNTIEVDHNE


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