Basic Information | |
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Family ID | F099444 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 103 |
Average Sequence Length | 54 residues |
Representative Sequence | MSYTKNETALLNFQNDISKLFYYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDS |
Number of Associated Samples | 67 |
Number of Associated Scaffolds | 103 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 88.89 % |
% of genes near scaffold ends (potentially truncated) | 1.94 % |
% of genes from short scaffolds (< 2000 bps) | 17.48 % |
Associated GOLD sequencing projects | 62 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (79.612 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (37.864 % of family members) |
Environment Ontology (ENVO) | Unclassified (85.437 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (97.087 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 71.43% β-sheet: 0.00% Coil/Unstructured: 28.57% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Marine Seawater Marine Plankton Marine Oceanic Marine Surface Seawater Seawater Marine Seawater Marine Hydrothermal Vent Fluids Marine Harbor Volcanic Co2 Seep Seawater |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
ACM22_11389563 | 3300001846 | Marine Plankton | MSYTKNELAVIDLISDINKLFSYVGEEDDQIAFDSLKQFEKYCVKFVNAIEVEQ* |
JGI25128J35275_10767461 | 3300002488 | Marine | MSYTRNERALLNLQNDINKLFDYVGEENDQIPFTSLRTFEKACVTFVN |
JGI26064J46334_10113783 | 3300003185 | Marine | MSYTKNEEALLNLQNDIGKLFSYVGEEDDLIPVYSLRQFEKACVRFVNAIECCDE* |
INDIC_18184241 | 3300003475 | Marine | MSYTKNEQALLNLQNDINKLFYYVGEEDDQIPVWSLKKFEKACVTFVNAIECCE* |
Ga0066845_1000136317 | 3300005432 | Marine | MSYTKNEEALLNLQNDINKLFYYVGEEDDQIPVWSLRKFEKACVTFVNAIECCE* |
Ga0066845_100453523 | 3300005432 | Marine | MSYTKNETALLNFQNDISKLFYYVGEEDDQIPFSFLRQFERYCIAFVNAIEVEEDS* |
Ga0066845_102366481 | 3300005432 | Marine | LINFQSDINKLFYYVGEENDQIPFESLKKFEKYCINFVNTIEVEQ* |
Ga0066830_100180901 | 3300005433 | Marine | MSYTKNETALLNFQNDISKLFDYVGEEDDQIPFSSLRKFERYCIAFINAIEVEED |
Ga0066830_100855672 | 3300005433 | Marine | MSYTKNETALLNFQNDISKLFYYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDS* |
Ga0066865_101325072 | 3300005523 | Marine | MSYTKNEQALLNLQNDIGKLFSYVGEEDDLIPVYSLRQFEKACVTFVNAIECCDE* |
Ga0066835_100120789 | 3300005606 | Marine | MSYTKNEAALLNFQNDISKLFYYVGEEDDQIPFSSLRKFERYCIAFINAIEVEEDN* |
Ga0066835_100296044 | 3300005606 | Marine | MSDYTKNELALLNLTNDISKLFYYVGEEDDSIPVSSLKKFEQYCVKFVNAIEVDHDE* |
Ga0066840_100179323 | 3300005608 | Marine | MSYTKNEEALLNLQNDINKLFYYVGEEDDQIPVWSLRKFEKACVTFVNAIECCE** |
Ga0066840_100715761 | 3300005608 | Marine | MSYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFERYCIAFINAIEVE |
Ga0066840_100902331 | 3300005608 | Marine | MSDYTKNELALLNLTNDISKLFYYVGEEDDSIPVSSLKKFEQYCVKFVNAIEVDHNE* |
Ga0066840_101430252 | 3300005608 | Marine | MSYTKNEAALLNFQNDISKLFDYVGEEDDQIPFSSLRTFERYCIAFINAIEVEEDS* |
Ga0066377_101135301 | 3300005934 | Marine | MSYTKNELALINFQSDINKLFYFVGEENDQIPFEYLKKFEKYCINFVNTIEVEQ* |
Ga0066364_100602715 | 3300005960 | Marine | MSYTKNELAVIDLINDINKLFYYVGEDDDQIPFESLKQFEKYCVKFVNAIEVEQ* |
Ga0066370_101512282 | 3300005971 | Marine | MSYTKNEVALETLISDINKLFYYVGEENDQIPFESLKQFEKYCINFVNTIEVEQ* |
Ga0066370_102460762 | 3300005971 | Marine | MSYTKNEVALETLISDINNLFYFVGEENDQIPIEFLKKFEKYCINFVNTIEVEQ* |
Ga0066370_102673651 | 3300005971 | Marine | MNDYTKNELALINFQSDINKLFYYVGEEDDQIPFESLKQFEKYCVKFVNAIEVEQ* |
Ga0068468_10686235 | 3300006305 | Marine | MSEYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDS* |
Ga0068468_10994415 | 3300006305 | Marine | MSEYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIRFINSIEVEEDD* |
Ga0068468_11253601 | 3300006305 | Marine | GVCSKMSEYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIRFINSIEVEEDD* |
Ga0068486_10775771 | 3300006329 | Marine | MSEYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIRFINSI |
Ga0068486_13857051 | 3300006329 | Marine | NEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIRFINSIEVEEDD* |
Ga0068500_11076475 | 3300006332 | Marine | MSYTKNEEALLNLQNDIGKLFSYVGEEDDLIPFYSLRQFEKACVRFVNAIECCDE* |
Ga0099675_107914410 | 3300006334 | Marine | MSEYTKNEAALLDFQHDVGKLFSYVGEEDDQIPFSSLRKFEKYCITFINSIEVMEDD* |
Ga0099693_10213634 | 3300006345 | Marine | MSYTKNELALIDFQSDINKLFDYVGEEDDQIPFESLKTFEKYCVKFVNAIEVEQ* |
Ga0099693_131023612 | 3300006345 | Marine | MSYTKNETALLNFQNDINKLFDYVGEEDDQIPFSSLRTFEKYCIAFINAIEVEEDN* |
Ga0099693_14517813 | 3300006345 | Marine | MSYTKNELAVIDLISDINKLFSYVGEEDDQIDFEDLRQFEKYCVKFVNAIEVEQ* |
Ga0099693_14777156 | 3300006345 | Marine | NELAVIDLISDINKLFSYVGEDDDQIHFEALKQFEKYCVKFVNAIEVEQ* |
Ga0099954_12944083 | 3300006350 | Marine | MSEYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCITFINSIEVMEDD* |
Ga0099954_15113151 | 3300006350 | Marine | MSYTKNETALLNFQNDINKLFDYVGEEDDQIPFSSLRKFEKYCI |
Ga0099963_10220874 | 3300006413 | Marine | MSEYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCITFINSIEVEEDD* |
Ga0099963_13388631 | 3300006413 | Marine | MSYTKNETALLNFQNDINKLFDYVGEEDDQIPFSSLRTFEKYCIAFINAIEVEEDS* |
Ga0099963_14133592 | 3300006413 | Marine | MSYTKNEIALETFISNVNSFFYYVGEENDQIPFESLKQFEKYCVKFVNAIEVEQ* |
Ga0100226_10153994 | 3300006480 | Marine | MSEYTKNEAALLDFQHDVSKLFSYVGEEDDQIPFSSLRKFEKYCIRFINSIEVEEDD* |
Ga0100226_10244124 | 3300006480 | Marine | AVIDLINDINKLFYYVGEDDDQIPFESLKQFEKYCVKFVNAIEVEQ* |
Ga0101666_10792282 | 3300007113 | Volcanic Co2 Seep Seawater | MSYTKNEVALETLISDINYLFYFVGEENDQIPFEYLKKFEKYCINFVNTIEVEQ* |
Ga0115012_109315352 | 3300009790 | Marine | MSYTKNEVALETLISDINKLFYYVGEEDDQIPFESLKKFEKYCINFVNTIEVEQ* |
Ga0115012_114038713 | 3300009790 | Marine | MNDYTKNELALINFQSDINKLFYYVGEEDDQIPFESLKTFEKYCVKFVNAIEVEQ* |
Ga0138383_12399721 | 3300011330 | Marine | FIGVCSKMSYTKNETALLNFQNDISKLFYYVGEEDDLIPFSSFRKFEKYCIAFINAIEVEEDS* |
Ga0160422_108391941 | 3300012919 | Seawater | SDINKLFSYVGEENDQIDFDDLKQFEKYCVKFVNAIEVEQ* |
Ga0160423_103260002 | 3300012920 | Surface Seawater | MSYTKNELALIDFQSDINKLFYYVGEENDQIPFESLKKFEKYCINFVNTIEVEQ* |
Ga0163110_101182525 | 3300012928 | Surface Seawater | MSYTKNELALINLQSDINKLFDYVGEENDQIPFDSLRKFEKACVAFVNAIEVCEA* |
Ga0163110_109184863 | 3300012928 | Surface Seawater | MSYTKNETALLNFQNDISKLFYYVGEEDDQIPFSSLRQFERYCIAFVNAIEVEEDS* |
Ga0163110_111908163 | 3300012928 | Surface Seawater | MSYTKNETALLNFQNDISKLFYYVGEEDDQIPFSSLRTFEKYCIAFINAIEVEEDS* |
Ga0163180_100761628 | 3300012952 | Seawater | MSDYTKNELALLDLTNDINKLFDYVGEEDDLIPVSSLKKFEQYCVKFVNAIEVDHDE* |
Ga0163180_103199092 | 3300012952 | Seawater | MSYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDD* |
Ga0163180_105835181 | 3300012952 | Seawater | KMSYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDD* |
Ga0163180_106992712 | 3300012952 | Seawater | MSYTKNEEALLNLQNDIGKLFSYVGEEDDLIPVYSLRQFEKACVRFVNAIECCDA* |
Ga0163180_117478922 | 3300012952 | Seawater | MSYTKNETALLNLQNDISKLFYYVGEEDDQIPFSSLRKFEKYCITFINAFEVEEDS* |
Ga0163179_1003532211 | 3300012953 | Seawater | MSDYTKNELALLDLTNDINKLFDYVGEEDDLIPVSSLKKFEQYCVKFVNTIEVDQNG* |
Ga0163179_121215421 | 3300012953 | Seawater | MSYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIAFINA |
Ga0211707_10013372 | 3300020246 | Marine | MSEYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDS |
Ga0211584_10052295 | 3300020248 | Marine | MSYTKNEQALLNLQNDINKLFYYVGEEDDQIPVWSLKKFEKACV |
Ga0211584_10134566 | 3300020248 | Marine | LLNLQNDINKLFYYVGEEDDQIPVWSLKKFEKACVTFVNAIECCE |
Ga0211586_10054145 | 3300020255 | Marine | MSYTKNEQALLNLQNDINKLFYYVGEEDDQIPVWSLKKFEKACVTFVNAIECCEX |
Ga0211588_10046853 | 3300020260 | Marine | MSYTKNEEALLNLQNDIGKLFSYVGEEDDLIPVYSLRQFEKACVTFVNAIECCE |
Ga0211483_100154341 | 3300020281 | Marine | MSYTKNEQALLNLQNDINKLFYYVGEEDDQIPVWSLKKFEKACVTFVNAIECCE |
Ga0211471_10493782 | 3300020287 | Marine | MSYTKNELALINFQSDINKLFYYVGEENDQIPFESLKKFEKYCINFVNTIEVEQ |
Ga0211474_10052513 | 3300020296 | Marine | MSYTRNERALLNLQNDINKLFDYVGEENDQIPFTSLRTFEKACVAFVNAIEVES |
Ga0211490_10090846 | 3300020297 | Marine | MSDYTKNELALIDFQSDINKLFYYVGEEDDQIPFESLKQFEKYCVKFVNAIEVEQ |
Ga0211628_10523161 | 3300020311 | Marine | MSYTKNETALLNLQNDISKLFYYVGEEDDQIPFSSLRKFEKYCITFINAIEVEEDN |
Ga0211589_10553072 | 3300020315 | Marine | MSYTKNELALINFQSDINKLFYYVGEENDQIPFESLKQFEKYCVKFINTIEVEQ |
Ga0211589_10619283 | 3300020315 | Marine | MSEYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIRFINSIEVEEDD |
Ga0211597_10087904 | 3300020320 | Marine | MSYTKNEEALLNLQNDIGKLFSYVGEEDDLIPVYSLRQFEKACVTFVNAIECCEX |
Ga0211489_101983072 | 3300020366 | Marine | MSYTKNETALLNFQNDISKLFYYVGEEDDQIPFSSLRKFEKYCIA |
Ga0211703_101062442 | 3300020367 | Marine | MSYTKNEVALETLMSDINKLFYYVGEENDQIPFESLKQFEKYCINFVNTIEVEQ |
Ga0211672_102507203 | 3300020370 | Marine | MSYTKNETALLNLQNDISKLFYYVGEEDDQIPFSSLRKFEKYCITFINAIEVEEDS |
Ga0211647_100226935 | 3300020377 | Marine | MSYTKNELALINLQSDINKLFDYVGEENDQIPFDSLRKFEKACVAFVNAIEVCEA |
Ga0211699_101183031 | 3300020410 | Marine | MSYTKNEVALETLISDINNLFYFVGEEDDQIPFEYLKKFEKYCINFVNTIEVEQ |
Ga0211557_104192561 | 3300020418 | Marine | EXNLLVPIPXTXFIGVCSKMSYTKNETALLNFQNDISKLFYYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDS |
Ga0211512_100506751 | 3300020419 | Marine | DINKLFDYVGEEDDLIPVSSLKKFEQYCVKFVNAIEVDHDE |
Ga0211580_1000022325 | 3300020420 | Marine | MSDYTKNELALLNLTNDISKLFYYVGEEDDSIPVSSLKKFEQYCVKFVNAIEVDHDE |
Ga0211565_100177227 | 3300020433 | Marine | MSYTKNETALLNFQNDISKLFDYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDS |
Ga0211565_105054342 | 3300020433 | Marine | MSYTKNEVALETLISDINNLFYFVGEDDDQIPFEYLKKFEKYCINFVNTIEVEQ |
Ga0211708_101590004 | 3300020436 | Marine | MSYTKNEVALETLISDINNLFYFVGEENDQIPIEFLKKFEKYCINFVNTIEVEQ |
Ga0211576_103841471 | 3300020438 | Marine | MSYTRNERALLNLQNDINKLFDYVGEENDQIPFTSLRTFEKACVTFVNAIEVES |
Ga0211576_106803102 | 3300020438 | Marine | MSDYTKNELALLNLTNDISKLFYYVGEEDDSIPVSSLKKFEQYCVKFVNT |
Ga0211695_100150132 | 3300020441 | Marine | MSYTKNEEALLNLQNDIGKLFSYVGEEDDLIPVYSLRQFEKACVRFVNAIECCDE |
Ga0211638_104169371 | 3300020448 | Marine | ELALIDLIGDINKLFYYVGEENDQIPFESLKQFEKYCVKFINTIEVEQ |
Ga0211473_1000972613 | 3300020451 | Marine | MSDYTKNELALLDLTNDINKLFDYVGEEDDLIPVSSLKKFEQYCVKFVNAIEVDHDE |
Ga0211473_100158877 | 3300020451 | Marine | MSYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDD |
Ga0211473_106880471 | 3300020451 | Marine | ALIDFQSDINKLFYYVGEEDDQIPFESLKTFEKYCIKFVNAIEVEQ |
Ga0211535_101604853 | 3300020461 | Marine | MSYTKNELAVIDLINDINKLFYYVGEDDDQIPFESLKQFEKYCVKFVNAIEVEQ |
Ga0211546_100915781 | 3300020462 | Marine | NDINKLFDYVGEEDDLIPVSSLKKFEQYCVKFVNAIEVDHDE |
Ga0211546_100939108 | 3300020462 | Marine | NDINKLFDYVGEEDDLIPVSSLKKFEQYCVKFVNTIEVDQNG |
Ga0211577_1000132721 | 3300020469 | Marine | MSDYTKNELALLNLTNDISKLFYYVGEEDDSIPVSSLKKFEQYCVKFVNTIEVDHNE |
Ga0226836_106153241 | 3300021792 | Hydrothermal Vent Fluids | MSEYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFEKYCIRFINSIEIEEDD |
Ga0209348_10729752 | 3300025127 | Marine | MSYTKNEQALLNLQNDIGKLFSYVGEEDDLIPVYSLRQFEKACVTFVNAIECCDE |
Ga0209348_11899343 | 3300025127 | Marine | SITNKSQMSDYTKNELALLNLTNDISKLFYYVGEEDDSIPVSSLKKFEQYCVKFVNAIEVDHNE |
Ga0209645_100511516 | 3300025151 | Marine | MSYTKNEEALLNLQNDINKLFYYVGEEDDQIPVWSLRKFEKACVTFVNAIECCE |
Ga0208878_10232303 | 3300026083 | Marine | MSYTKNELALINFQSDINKLFYFVGEENDQIPFEYLKKFEKYCINFVNTIEVEQ |
Ga0208451_10067892 | 3300026103 | Marine Oceanic | MSYTKNEEALLNLQNDIGKLFSYVGEEDDLIPVYSLRQFEKACVRFVNAIECCDEX |
Ga0208405_10326392 | 3300026189 | Marine | MSYTKNEQALLNLQNDIGKLFSYVGEEDDLIPVYSLRQFEKACVTFVNAIECCDEX |
Ga0208405_10436953 | 3300026189 | Marine | MSYTKNEAALLDFQHDVSKLFYYVGEEDDQIPFSSLRKFERYCIAFINAIEVEEDS |
Ga0135227_10444311 | 3300029302 | Marine Harbor | MSYTKNELALIDFQSDINKLFYYVGEEDDQIPFESLKTFEKYCVKFVTAGS |
Ga0183748_10662072 | 3300029319 | Marine | MSYTKNETALLNFQNDISKLFYYVGEEDDQIPFSSLRTFEKYCIAFINAIEVEEDS |
Ga0183757_100204716 | 3300029787 | Marine | MSDYTKNELALLDLTNDINKLFDYVGEEDDLIPVSSLKKFEQYCVKFVNTIEVDQNG |
Ga0073989_132782623 | 3300031062 | Marine | ALIDFQSDINKLFYYVGEEDDQIPFESLKTFEKYCVKFVNAIEVEQ |
Ga0315331_107386541 | 3300031774 | Seawater | WTLTHYNSIIANKSQMSDYTKNELALLNLTNDISKLFYYVGEEDDSIPVSSLKKFEQYCVKFVNTIEVDHNE |
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