NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F099423

Metagenome Family F099423

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099423
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 68 residues
Representative Sequence VSEDFYDHMKKEKELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYRGLRTWVVGFIPGF
Number of Associated Samples 59
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 8.74 %
% of genes near scaffold ends (potentially truncated) 31.07 %
% of genes from short scaffolds (< 2000 bps) 84.47 %
Associated GOLD sequencing projects 50
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (48.544 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface
(23.301 % of family members)
Environment Ontology (ENVO) Unclassified
(66.019 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(67.961 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 62.50%    β-sheet: 0.00%    Coil/Unstructured: 37.50%
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Variant

102030405060VSEDFYDHMKKEKELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYRGLRTWVVGFIPGFSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
52.4%47.6%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Deep Ocean
Seawater
Seawater
Marine
Marine
Marine
Marine
Filtered Seawater
Seawater
Hydrothermal Vent Fluids
Marine Sediment
Seawater
Deep Subsurface
18.4%21.4%3.9%5.8%3.9%4.9%11.7%23.3%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI24006J15134_1000584433300001450MarineVTKDFYDHMKEEQKLLYHSYQESLRQKNERMQRMAVWDPEDKTAENSQIKKLIFALYRGLKVWVVRFIPGF*
GOS2246_1003177633300001974MarineMTEDFYDHMKKEKELLNLSYKESLRQKEERMAVWDPKDKPPVFSQIKTLIMTRYRALRTWVVGFIPGF*
KVRMV2_10035625253300002231Marine SedimentVSEDFYDHVKKEQELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYQGFKTWVVGFIPGF*
KVRMV2_10041491433300002231Marine SedimentFYDHMKEEQKLLNLSYQESLRQKEERMAVWDPQDKPAVFSQIKKLIIARYRALREWAVCLYPGKR*
KVRMV2_10063555123300002231Marine SedimentMKNDFYDHMKKEKELLNLSYRESLRQKEERMAVWDPQDKMTVFSQIKTLIIARYXGXXTWVVGFIPGF*
KVWGV2_1029032443300002242Marine SedimentMTEDFYDHMKKEQEFLDLSYRESLRQKHERMAVWDPGEERSVFWEIKTLIMTRYRALRKWAVCLYPGNWW*
KVWGV2_1065532733300002242Marine SedimentMTKDFYEHMKKEQDTLDFSYRESLRQKHERMAVWDPGEEKAVFWEIKTLIMTRYRALKTWVVGFIPGF*
Ga0066223_119889923300004461MarineVIKDFYDHMKEEQKLLYHSYQESLRQKNERMQGMAVWEPDDKTAENSQIKKLIFALYRGLKVWVVRFIPGF*
Ga0068500_102842723300006332MarineMLFKCQIKMTEDFYDHMKKEQDMLDSSYRESLRQKHERMAVWDPGEEKAVFWEIKTLIMTRYRALRKWAVCLYPGNWW*
Ga0068500_117670623300006332MarineMQNLKLETGKKMPKDFYDHMKEEQKLLNLSYQESLRQKEERMAVWDPQDKMTVFSQIKTLIIARYRGLKTWVVGFIPGF*
Ga0100228_109311013300006565MarineLLNLSYQESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYQGFKTWVVGFIPGF*
Ga0100228_148759213300006565MarineVSEDFYDHMKKEKELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTRIIARYQGFKT
Ga0098036_109429923300006929MarineMTKDFYEHMKKEQDMLDFSYRESLRQKHERMAVWDPGEERAVFWEIKTLIMTRYQALKTWVVGFIPGF*
Ga0098036_111735123300006929MarineMLLICQIKMTKDFYEHMKKEQDTLDSSYRESLRQKHERMAVWDPGEEKAVFWEIKTLIMTRYRALKTWVVGFIPGF*
Ga0098036_116828233300006929MarineDLSYRESLRQKAERMAVWDPQDKMAENSQIKTLIIARYQAFKTWVVGFIPGF*
Ga0098036_127726233300006929MarineVSEDFYDHMKKEKELLNLSYKESLRQKKERMAVWDPEDKMTVFSQIKTLIIARYQGFKTWVVGFIPGF*
Ga0110931_103339253300007963MarineMKKEQKLLNLSYQESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYQGFKTWVVGFIPGF
Ga0110931_127421823300007963MarineMTKDFYDHMKEEQKLLYHSYQESLRQKNERMHGMDVWEPDDKTAENSQIKKLIFALYRGLKTWLARFIPGV*
Ga0114899_110339613300008217Deep OceanFYDHMKKEKELLYLSYRESLRQKEERMAVWDPEDKMTVFSQIKTLIMTRYRALRTWVVGFIPGF*
Ga0114899_126746823300008217Deep OceanEQELLNLSYQESLRQKNARMAVWDPKDKTAENSQIKKLINAWYRGLKTWVVRFIPGF*
Ga0114904_103541943300008218Deep OceanVSEDFYDHMKKEKELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYRGLRTWVVGFIPGF*
Ga0114905_110423823300008219Deep OceanMTEDFYDHMKKEQELLNLSYRESLRQKEERMAVWDPKDKTAENSQIKKLINAWYRGLKTWVVRFIPGF*
Ga0114910_108420533300008220Deep OceanHMKKEKELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYQGFKTWVVGFIPGF*
Ga0114903_108197923300009412Deep OceanMKNDFYDHMKKEKELLNLSYRESLRQKEERMAVWDPQDKMTVFSQIKTLIIARYQGFKTWVVGFIPGF*
Ga0114902_104554323300009413Deep OceanMTEDFYDHMKKEQELLNLSYRESLRQKEERMAVWDPKDKTAENSQIKKLINAWYRGLRTWVVRFIPGF*
Ga0114902_107027143300009413Deep OceanMKKEKELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYRGLRTWVVGFIPGF
Ga0114909_112320723300009414Deep OceanMKKEQELLNLSYQESLRQKNERMAVWDPQDKTAENSQIKKLISRSYRGLKGWVVGFIPGF
Ga0114908_111705713300009418Deep OceanMVKDFYDHIKKEQEILNLSYQESLRQKNERMAVWDPGKERAVFWEIKTFIMTRYRALRTWVVGFIPGF*
Ga0114908_115560613300009418Deep OceanMTEDFYDRMKKEQELLNLSYQESLRQKNERMAVWDPQDKTAENSQIKKLISRSYRGLKGWVVGFIPGF*
Ga0114908_124890923300009418Deep OceanKKTLNSMTKDFYNHMKEEQKLLYHSYQESLRQKNERMHGMDVWEPDDKTAENSQIKKLIFALYRGLKTWVVRFIPGF*
Ga0114932_1003731053300009481Deep SubsurfaceMTKDFYEHMKKEQDTLDSSYRESLRQKHERMAVWDPGEEKAVFWEIKTLIMTRYRALKTWVVGFIPGF*
Ga0114932_1010527923300009481Deep SubsurfaceMTEDFYDHMKKEQEFLDLSYRESLRQKHERMAVWDPEEERSVFWEIKTLIMTRYRALRKWAVCLYPGNWW*
Ga0114932_1011738233300009481Deep SubsurfaceVTEDFYDHMKKEQELLNLSYQESLRQKNERMAVWDPQDKTAENSQIKKLISRSYRGLKGWVVGFIPGF*
Ga0114932_1018197543300009481Deep SubsurfaceVENDFYNHMKKEKELLNLSYQESLRQKHERMAVWDPKDKMTVFSQIKTLIIARYRGLRTWVVGFIPGF*
Ga0114932_1023528533300009481Deep SubsurfaceVTEDFYDHMKKEQELLNLSYRESLRQKEERMAVWDPKDNNKKMAVFSQIKKLINAWYRGLRTWVVRFIPGF*
Ga0114932_1070943513300009481Deep SubsurfaceVSEDFYDHVKKEQELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYRGLRTGVVGFIPG
Ga0114900_110500323300009602Deep OceanVSEDFYDHMKKEEELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYRGLRTWVVGFIPGF*
Ga0114901_104691943300009604Deep OceanVSEDFYDHMKKEKELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIAQYRGLRTGVVGFIPGL*
Ga0114901_114647323300009604Deep OceanMTKDFYNHMKEEQKLLYHSYQESLRQKNERMHGMDVWEPDDKTAENSQIKTLIMTRYQALKAWVVGFIPGF*
Ga0114901_119486723300009604Deep OceanMVKDFYDHMKKEQEILNLSYQESLRQKNERMAVWDPGEEKAVFWEIKTFIIARYRALRTWVVGFIPGF*
Ga0114906_102916533300009605Deep OceanVSEDFYDHMKKEKELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYQGFKTWAVGFIPGF*
Ga0114906_106519523300009605Deep OceanMTEDFYDHMKKEQELLNLSYRESLRQKEERMAVWDPKDDNKKMAVFSQIKKLINAWYRGLRTWVVRFIPGF*
Ga0114933_1009834453300009703Deep SubsurfaceVENDFYDHMKKEKELLNLSYRESLRQKAERMAVWDPQDKMTVFSQIKTLIIARYQGFKTWVVGFIPGF*
Ga0114933_1022408833300009703Deep SubsurfaceVTEDFYDHMKKEQELLNLSYQESLRQKRERMAVWDPQDKTAENSQIKKLISRSYRGLKGWVVGFIPGF*
Ga0114933_1025127023300009703Deep SubsurfaceMTKDFYMHMKEEQKLLNLSYQESLRQKEERMAVWDPQDKMTVFSQIKTLIIARYRGLKTWVVGFIPGF*
Ga0114933_1082205143300009703Deep SubsurfaceVSEDFYDHVKKEQELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYQGFKTW
Ga0114933_1089317023300009703Deep SubsurfaceMTKDFYEHMKKEQDTLDSSYRESLRQKNERMAVWDPGEEKAVFWEIKTLIMTRYRALKTWVVGFIPGF*
Ga0114933_1109386513300009703Deep SubsurfaceMKKEKELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYQGFKTWV
Ga0115002_1116751413300009706MarineMWVKKMTKDFYDHMKEEQKILYHSYQESLRQKNERMHKMAVWEPDEETAVFSQIKKLISALYRGLKT*
Ga0098049_108405913300010149MarineELLNLSYQESLRQKHERMAVWDPKDKMTVFSQIKTLIIARYQGFKTWVVGFIPGF*
Ga0098059_116728023300010153MarineVSEDFYDHVKKEQELLNLSYKESLRQKEERMAVWDPNDKMTVFSQIKTSIIARYRGLKTWVVGFIPGF*
Ga0098047_1005006743300010155MarineMSEDFYDHMKKEQEILNLSYQESLRQKSERMAVWEPKDKMTVFSQIKKLIAGSYRGLKGWVVGFIPGF*
Ga0133547_1176415133300010883MarineMELKKMTKDFYDHMKEEQKLLYYSYQESLRQKNERMERMAVWEPDEETAVFSQIKTSILALYRGLKTWVIQF
Ga0114934_1002094153300011013Deep SubsurfaceVTEDFYDHMKKEQEILNLSYQESLRQKNERMAVWDPQDKTAENSQIKKLISRSYRALKGWVVGFIPGF*
Ga0114934_1002596163300011013Deep SubsurfaceVTEDFYDHMKKEQELLNLSYQESLRQKNERMAVWDPQDKTAENSQIKKLISRSYRGLKGWVV
Ga0114934_1012475543300011013Deep SubsurfaceMKKEQELLNLSYQESLRQKEERMAVWDPEDKMTVFSQIKSLIIARYRGLRTWVVGFIPGF
Ga0114934_1013829213300011013Deep SubsurfaceMTEDFYDHMKKEQEFLDLSYRESLRQKHERMAVWDPEEERSVFWEIKTLIMTRYRALRKWAVCLYPGNW
Ga0114934_1017039743300011013Deep SubsurfaceLKNVIMLSICQIKMTKDFYEHMKKEQDMLDFSYRESLRQKHERMAVWDPGEERAVFWEIKTLIMTRYQALKTWVVGFIPGF*
Ga0114934_1019135723300011013Deep SubsurfaceVSEDFYDHMKKEKELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYQGFKTWVVGFIPGF*
Ga0163180_1190960823300012952SeawaterMTEDFYDHMKKEQDILDSSYRESLRQKHERMAVWDPGEEKAVFWEIKTFIMTRYRALRKWAVCLYPGNWW*
Ga0181416_107502643300017731SeawaterMKEEQKLLYHSYQESLRQKNERMHGMDVWEPDDKTAENSQIKTLIFALYRGLKTWVVR
Ga0181418_114423713300017740SeawaterMTKDFYNHMKEEQKLLYHSYQESLRQKNERMHGMDVWEPDDKTAENSQIKKLIFALYRGLKTWVV
Ga0181389_109455313300017746SeawaterVTKDFYDHMKEEQKLLYHSYQESLRQKNERMQRMAVWDPEDKTAENSQIKKPINAWYRGLKTWVVRF
Ga0181420_104162633300017757SeawaterMTKDFYNHMKEEQKLLYHSYQESLRQKNERMHGMDVWEPDDKTAENSQIKKPINAWYRDLKTWVVRFIPGF
Ga0181420_108370643300017757SeawaterMLSKCQIRMTEDFYDHMKKEQDILDSSYRESLRQKHERMAVWDPGEEKAVFWEIKTLIMTRYRALRTWVVGFIPGF
Ga0181385_119929533300017764SeawaterMTEDFYDHMKKEQELLDLSYRESLRQKAERMAVWDPQDKMAENSQIKTLIIARYQAFKTWVVGFIPGF
Ga0181413_121211933300017765SeawaterVTKDFYDHMKEEQKLLYHSYQESLRQKNERMQRMAVWDPGEERAVFWEIKTFIIARYRALRTWVVG
Ga0181430_109798943300017772SeawaterMTKDFYNHMKEEQKLLYHSYQESLRQKNERMHGMDVWEPDDKTAENSQIKTLIFALYRGLKTWVVRF
Ga0181386_111204543300017773SeawaterVSEDFYDHMKKEKELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYRGLRTWVVG
Ga0181386_120566413300017773SeawaterVTEDFYDHMKKEKELLDLSYRESLRQKEERMAVWDSEDKMTVFSQIKTFIIARYRGLRTWVVGFIPGF
Ga0181432_107142423300017775SeawaterVSEDFYDHMKKEQEILNLSYQESLRQKSERMAVWDPQDKMTVFSRIKKLIAGSYRGLKLWVVGFIPGF
Ga0181423_116683413300017781SeawaterMTKDFYNHMKEEQKLLYHSYQESLRQKNERMHGMDVWEPDDKTAENSQIKKPINAWYRDLKTWVV
Ga0211514_1063349723300020459MarineMLFTCQIKMTEDFYEHMKKEQDILDSSYRESLRQKHERMAVWDPGEEKAVFWEIKTFIMTRYQGFKTWVVGFIPGF
Ga0211579_1013671113300020472MarineQNMLDSSYRESLRQKHERMAVWDPGEEKAVFWEIKTLIMTRYRALRTWVVGFIPGF
Ga0211625_10000885283300020473MarineMLFKCQIKMTEDFYDHMKKEQDILDASYRESLRQKHERMAVWDPGEEKAVFWEIKTFIIARYRALREWAVCLYPGKRLK
Ga0226832_1010526133300021791Hydrothermal Vent FluidsVTEDFYDHMKKEQELLNLSYQESLRQKNERMAVWDPQDKTAENSQIKKLISRSYRGLKGWVVGFIPGF
Ga0209992_1001568513300024344Deep SubsurfaceKELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYQGFKTWVVGFIPGF
Ga0209992_1003070833300024344Deep SubsurfaceMTKDFYEHMKKEQDTLDSSYRESLRQKHERMAVWDPGEEKAVFWEIKTLIMTRYRALKTWVVGFIPGF
Ga0209992_1004907043300024344Deep SubsurfaceMTEDFYDHMKKEQEFLDLSYRESLRQKHERMAVWDPEEERSVFWEIKTLIMTRYRALRKWAVCLYPGNWW
Ga0209992_1005742453300024344Deep SubsurfaceVENDFYDHMKKEKELLNLSYRESLRQKAERMAVWDPQDKMTVFSQIKTLIIARYQGFKTWVVGFIPGF
Ga0209992_1008291753300024344Deep SubsurfaceKIVTEDFYDHMKKEQELLNLSYQESLRQKNERMAVWDPQDKTAENSQIKKLISRSYRGLKGWVVGFIPGF
Ga0209992_1014658223300024344Deep SubsurfaceVTEDFYDHMKKEQELLNLSYRESLRQKEERMAVWDPKDNNKKMAVFSQIKKLINAWYRGLRTWVVRFIPGF
Ga0208919_103292123300025128MarineMKKEKELLNLSYKESLRQKKERMAVWDPEDKMTVFSQIKTLIIARYQGFKTWVVGFIPGF
Ga0208919_106449233300025128MarineMQNLKLETGKKMPEDFYDHMKEEQKLLNLSYQESLRQKEERMAVWDPQDKMTVFSQIKTLIIARYRGLKTWVVGFIPGF
Ga0208919_110900633300025128MarineMTKDFYDHMKEEQKLLYHSYQESLRQKNERMHGMDVWEPDDKTAENSQIKKLIFALYRGLKTWVVRFIPGF
Ga0209232_108849753300025132MarineMKKEQDILDSSYRESLRQKHERMAVWDPGEEKAVFWEIKTLIMTRYRALRTWVVGFIPGF
Ga0209232_110896913300025132MarineMDFYDHMKKEQKLLNLSYQESLRQKSERMAVWDPQDKMTVFSQIKTFIIARYRGLRTGVVRFIPG
Ga0209337_100411733300025168MarineVTKDFYDHMKEEQKLLYHSYQESLRQKNERMQRMAVWDPEDKTAENSQIKKLIFALYRGLKVWVVRFIPGF
Ga0209337_105007233300025168MarineVTKDFYNHMKEEQKLLYHSYQESLRQKNERMHGMDVWEPDDKTAENSQIKKPINAWYRGLKTWVVRFIPGF
Ga0208449_102351313300025280Deep OceanVSEDFYDHMKKEKELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYRGLRTW
Ga0208030_101473553300025282Deep OceanMTKDFYNHMKEEQKLLYHSYQESLRQKNERMHGMDVWEPDDKTAENSQIKTLIMTRYQALKAWVVGFIPGF
Ga0208450_106076923300025301Deep OceanMTEDFYDHMKKEQELLNLSYRESLRQKEERMAVWDPKDKTAENSQIKKLINAWYRGLKTWVVRFIPGF
Ga0208684_105332853300025305Deep OceanFYDHMKKEKELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYQGFKTWVVGFIPGF
Ga0256381_105696813300028018SeawaterVSEDFYDHVKKEQELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYQGFKTWVVGFIPGF
Ga0256382_102246843300028022SeawaterMLHLKLKNVITLLKCRKKMTEDFYDHMKKEQELLDLSYRESLRQKAERMAVWDPQDKIAENSQIKKLIMTRYQALKAWVVGFIPGF
Ga0256382_116934233300028022SeawaterMLFTCQIKMTKDFYEHMKKEQDMLDSSYRESLRQKHERMAVWDPGEEKAVFWEIKTLIMTRYRALRTWVVGFIPGF
Ga0256380_106366933300028039SeawaterVSEDFYDHMKKEKELLNLSYKESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYQGFKTWVVGFIPGF
Ga0183683_102245323300029309MarineMSNDFYDNMKKEQYMLDDSYRESLRQKHERMAVWDPGEKTPVFSQIKKLIIARYRALKKWAVCLYPGKRLK
Ga0183755_101317163300029448MarineMLLICQIKMTKDFYEHMKKEQDTLDSSYRESLRQKHERMAVWDPGEEKAVFWEIKTLIMTRYRALKTWVVGFIPGF
Ga0183755_101796153300029448MarineMTEDFYEHMKKEQDMLDSSYRESLRQKHERMAVWDPGEEKAVFWEIKTLIMTRYRALRTWVVGFIPGF
Ga0310344_1055552613300032006SeawaterMPKDFYDHMKEEQKLLNLSYQESLRQKEERMAVWDPEDKMTVFSQIKTLIIARYRGLRTWVVGFIPG
Ga0326756_029462_387_6023300034629Filtered SeawaterVIKDFYDHMKEEQKLLYHSYQESLRQKNERMQGMAVWEPDDKTAENSQIKKLIFALYRGLKVWVVRFIPGF
Ga0326741_024642_861_10523300034654Filtered SeawaterMKEEQKLLYHSYQESLRQKNERMQGMAVWEPDDKTAENSQIKKLIFALYRGLKVWVVRFIPGF


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