Basic Information | |
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Family ID | F099351 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 103 |
Average Sequence Length | 59 residues |
Representative Sequence | MHNRFPSPVKVLVELLFVVSVIMICLGSAFGKLDEFVGHPMLAFVIFCGAVFLWYRFQET |
Number of Associated Samples | 88 |
Number of Associated Scaffolds | 103 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 64.08 % |
% of genes near scaffold ends (potentially truncated) | 40.78 % |
% of genes from short scaffolds (< 2000 bps) | 82.52 % |
Associated GOLD sequencing projects | 79 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (97.087 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge (19.417 % of family members) |
Environment Ontology (ENVO) | Unclassified (33.981 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (39.806 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 76.67% β-sheet: 0.00% Coil/Unstructured: 23.33% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Wetland Freshwater Lake Sediment Sediment Wetland Sediment Freshwater Wetlands Freshwater Natural And Restored Wetlands Wetland Arctic Peat Soil Soil Untreated Peat Soil Natural And Restored Wetlands Tropical Peatland Peat Soil Wastewater Anaerobic Digestor Sludge Activated Sludge Hydrocarbon Resource Environments Biosolids Hydrocarbon Resource Environments Enrichment Culture Anaerobic Biogas Reactor Granular Sludge |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Draft_00246705 | 3300000032 | Hydrocarbon Resource Environments | MHNRFPSPVKVLVELXFVVSVIMICLGSAFGKLDEFVGHPMLALVIFCGAVFLWYRFQET |
WSSedB1CaDRAFT_100180092 | 3300000313 | Wetland | LHFLSLKRSNDTGRCEMHNKFPSPVKVLVELLFVVSVILICMGAAFGKLDEFVGHPVLAFVIFCGAVFLWYRFQET* |
WSSedB1CaDRAFT_100484003 | 3300000313 | Wetland | MHNKFPSPVKVLVELLFVVSVILICMGAAFGKLDEFVGHPVLAFVVFCGAVFLWYRF |
WSSedL1B2DRAFT_10031422 | 3300000894 | Wetland | MKVLVELLFVVSVIMICLGSAFGKVDEFVGHPILALVIFCGAVFLWYRFQET* |
JGIcombinedJ13530_1013748253 | 3300001213 | Wetland | MHNRYPSPVKVLVELLFVASVILICIGAAFGKLDEFVGHPVLAFVIFCCAVFLWYRFQET |
MLSBCLC_100159069 | 3300002220 | Hydrocarbon Resource Environments | MHNRFPSPVKVLVELLFVVSVIMIGKLDEFVGHPMLALVIFCGAVFLWYRFQET* |
JGI11641J44799_100159203 | 3300002961 | Wetland | MHNRFPSPMKVLVELLFVVSVIMICLGSAFGKVDEFVGHPILALVIFCGAVFLWYRFQET |
JGI20214J51088_1000087618 | 3300003432 | Wetland | MHNRFPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPVLAFVIFCGAVFLWYRFQET |
JGI20214J51088_101364432 | 3300003432 | Wetland | MHNKFPSPVKVLVELLFVVSVILICMGAAFGKLDEFVGHPVLAFVVFCGAVFLWYRFQET |
JGI20214J51650_108158651 | 3300003541 | Wetland | MHNRFPSPIKLFVELLFVVSVIIICMGAAFGKLDEFVGHPVMAFVIFCAAVFLWYRFQET |
Ga0031656_100285672 | 3300003858 | Freshwater Lake Sediment | MHNRFPSPMKVLVELLFVVSVIMICMGSAFGKLDEFVGHPILALVIFCGAVFLWYRFQET |
JGI26437J51864_100227273 | 3300003910 | Freshwater Lake Sediment | MKVLVELLFVVSVILICLGSAFGKLDEFVGHPMLALVIFCGAVFLWYRFQET* |
Ga0066599_1001283911 | 3300004282 | Freshwater | MKVLVELLFVVSVILICIGSSFGKLDEFIGHPILALVIFCGAVFLWYRFQET* |
Ga0068711_10269801 | 3300005144 | Enrichment Culture | MHNRYPSPVKVLVELLFVVSVILICLGSAFGKLDEFVGHPVLAFVIFCGAVFLWYRFQET |
Ga0079062_10070921 | 3300006388 | Anaerobic Digestor Sludge | QKRYYDTGRCAMNSQYPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVLFCGAVFLWYRFQET* |
Ga0079081_12869871 | 3300006593 | Anaerobic Digestor Sludge | YDTGRCAMNSQYPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVIFCGAVFLWYRFQET* |
Ga0079073_12615881 | 3300006594 | Anaerobic Digestor Sludge | YYDTGRCAMNSRYPSPVKVLVELLFVVSVILICAGAAFGKLDEFVGHPMLAFVLFCGAVFLWYRFQET* |
Ga0079103_14333061 | 3300006599 | Anaerobic Digestor Sludge | YDTGRCAMNSQYPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVLFCGAVFLWYRFQET* |
Ga0105095_100061754 | 3300009053 | Freshwater Sediment | MKVLVELLFVVSVIMICLGSAFGKLDEFVGHPMLALVIFCGAVFLWYRFQET* |
Ga0105095_100866411 | 3300009053 | Freshwater Sediment | MKVLVELLFVVSVIMICLGSAFGKLDEFVGHPILALVIFCGAVFLWYRFQET* |
Ga0105106_107083271 | 3300009078 | Freshwater Sediment | RHNDTGRCAMHNRFPSPMKVLVELLFVVSVIMICLGSAFGKLDEFVGHPMLALVIFCGAVFLWYRFQET* |
Ga0105098_100958851 | 3300009081 | Freshwater Sediment | NDTGRCAMHNRFPSPMKVLVELLFVVSVIMICLGSAFGKVDEFVGHPILALVIFCGAVFLWYRFQET* |
Ga0105099_100649343 | 3300009082 | Freshwater Sediment | MKVLVELLFVVSVIMICLGSAFGKLDEFVGHPILALVIFCAAVFLWYRFQET* |
Ga0105107_106283372 | 3300009087 | Freshwater Sediment | MHNRFPSPTKVLVELLFVVSVIMICLGSAFGKLDEFVGHPILALVIFCGAVFLWYRFQET |
Ga0102851_102162623 | 3300009091 | Freshwater Wetlands | MQRVKRHNDTGRCAMHNRFPSPVKVLVELLFVVSVIMICLGSAFGKLDEFVGHPMLAFVIFCGAVFLWYRFQET* |
Ga0115026_104604241 | 3300009111 | Wetland | MHNRFPSPIKVLVELLFVVSVILICLGSAFGKLDEFVGHPMLALVIFCGAVFLWYRFQET |
Ga0115027_101296401 | 3300009131 | Wetland | MKVLVELLFVVSVILICIGSSFGKLDEFIGHPILALVIFCGAVFLWYRF |
Ga0115027_107630032 | 3300009131 | Wetland | KRHNDTGRCAMHNRFPSPMKVFVELLFVVSVILICLGSAFGKLDEFVGHPMLALVIFCGAVFLWYRFQET* |
Ga0105100_100341134 | 3300009166 | Freshwater Sediment | MERHNDTGRCAMHNRFPSPMKVLVELLFVVSVIMICLGSAFGKVDEFVGHPILALVIFCGAVFLWYRFQET* |
Ga0113563_103039411 | 3300009167 | Freshwater Wetlands | NRFPSPVKVLVELLFVVSVIMICLGSAFGKLDEFVGHPMLAFVIFCGAVFLWYRFQET* |
Ga0105097_107112622 | 3300009169 | Freshwater Sediment | VELLFVVSVIMICMGSAFGKLDEFVGHPILALVIFCGAVFLWYRFQET* |
Ga0115028_102916642 | 3300009179 | Wetland | MKVFVELLFVVSVILICLGSAFGKLDEFVGHPMLALVIFCGAVFLWYRFQET* |
Ga0123326_10719361 | 3300009647 | Anaerobic Biogas Reactor | MNSQYPSPVKVLVELLFVDSVILICIGAAFGKLDEFVGHPMLAFVLFCGAVFLWYRFQET |
Ga0116154_100925653 | 3300009776 | Anaerobic Digestor Sludge | KVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVIFCGAVFLWYRFQET* |
Ga0116156_105092452 | 3300009780 | Anaerobic Digestor Sludge | AMNSQYPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVIFCGAVFLWYRFQET* |
Ga0116178_103684272 | 3300009781 | Anaerobic Digestor Sludge | QKRYYDTGRCAMNSQYPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVIFCGAVFLWYRFQET* |
Ga0116157_102174381 | 3300009782 | Anaerobic Digestor Sludge | VKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVLFCGAVFLWYRFQET* |
Ga0130016_108940212 | 3300009868 | Wastewater | MNSQYPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLALVIFCGAVFLWYRFQET |
Ga0116237_108027981 | 3300010356 | Anaerobic Digestor Sludge | SPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVIFCGAVFLWYRFQET* |
Ga0116241_103782692 | 3300010429 | Anaerobic Digestor Sludge | AMNSRYPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVIFCGAVFLWYRFQET* |
Ga0075319_10318911 | 3300014257 | Natural And Restored Wetlands | MHNRFPSPVKVLVELLFVVSVIMICLGSAFGKLDEFVGHPILALVIFCGAVFLWYRFQET |
Ga0075315_10246601 | 3300014258 | Natural And Restored Wetlands | MHNRFPSPVKVLVELLFVVSVIMICLGSAFGKVDEFVGHPILALVIFCGAVFLWYRFQET |
Ga0075360_10041583 | 3300014261 | Natural And Restored Wetlands | MHNRFPSPVKVLVELLFVVSVIMICLGSAFGKLDEFVGHPVLAFVIFCGAVFLWYRFQET |
Ga0075321_11208181 | 3300014300 | Natural And Restored Wetlands | MHNRFPSPVKVLVELLFVVSVILICMGAAFCKLDEFVGHPVLAFVIFC |
Ga0075317_11805152 | 3300014309 | Natural And Restored Wetlands | KVLVELLFVVSVIMICLGSAFGKLDEFVGHPILALVIFCGAVFLWYRFQET* |
Ga0075356_10440572 | 3300014323 | Natural And Restored Wetlands | MHNRFPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPVLAFVVFCGAVFLWYRFQET |
Ga0187786_100411651 | 3300017944 | Tropical Peatland | MHNRYPSAVKLFVELLFVVSVIMICMGAAFGKLDDFVGHPVLAFVIFCAAIFLWYRFQET |
Ga0187777_105076552 | 3300017974 | Tropical Peatland | MHNRYPSPVKLFVELLFVVSVIMICMGAAFGKLDEFVGHPVLAFVIFCAAIFLWYRFQET |
Ga0179947_10634832 | 3300019202 | Anaerobic Digestor Sludge | MNSQYPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVLFCGAVFLWYRFQET |
Ga0179955_10650361 | 3300019203 | Anaerobic Digestor Sludge | YDTGRCAMNSQYPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVLFCGAVFLWYRFQET |
Ga0179955_10655992 | 3300019203 | Anaerobic Digestor Sludge | MNSRYPSPVKVLVELLFVVSVILICAGAAFGKLDEFVGHPMLAFVLFCGAVFLWYRFQET |
Ga0179940_10510091 | 3300019205 | Anaerobic Digestor Sludge | DTGRCAMNSQYPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVIFCGAVFLWYRFQET |
Ga0179956_12033471 | 3300019227 | Anaerobic Digestor Sludge | MNSQYPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVLFCGAVFLWYRFQ |
Ga0179935_10004142 | 3300019231 | Anaerobic Digestor Sludge | MNSQYPSPVKVLVELLFVVSVILICIGAVFGKLDEFVGHPMLAFVLFCGAVFLWYRFQET |
Ga0172286_13117861 | 3300019252 | Wetland | MHNRFPSPMKVFVELLFVVSVILICLGSAFGKLDEFVGHPMLALVIFCGAVFLWYRFQET |
Ga0214088_12830962 | 3300020814 | Granular Sludge | SPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVLFCGAVFLWYRFQET |
Ga0214088_17480382 | 3300020814 | Granular Sludge | MNSRYPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVIFCGAVFLWYRFQET |
Ga0226659_100082453 | 3300021603 | Granular Sludge | MNSRYPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVLFCGAVFLWYRFQET |
Ga0079039_10706862 | 3300022185 | Freshwater Wetlands | MHNRFPSPMKVLVELLFVVSVILICLGSAFGKLDEFVGHPMLALVIFCGAVFLWYRFQET |
Ga0079039_15158681 | 3300022185 | Freshwater Wetlands | MHNRFPSPVKVLVELLFVVSVIMICLGSAFGKLDEFVGHPMLALVIFCGAVFLWYRFQET |
Ga0079039_15990221 | 3300022185 | Freshwater Wetlands | MHNRFPSPMKVLVELLFVVSVIMICLGSAFGKLDEFVGHPMLALVIFCGAVFLWYRFQET |
Ga0208824_11801431 | 3300025629 | Anaerobic Digestor Sludge | MNSRYPSPVKVLVELLFVVSVILICAGAAFGKLDEFVGHPMLAFVLFCGAVFLWYRF |
Ga0209719_11514722 | 3300025677 | Anaerobic Digestor Sludge | MNSQYPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVIFCGAVFLWYRFQET |
Ga0208197_11939181 | 3300025720 | Anaerobic Digestor Sludge | MNSRYPSPVKVLVELLFVVSVILICAGAAFGKLDEFVGHPVLAFVIFCGAVFLWYRFQET |
Ga0209745_11676841 | 3300025739 | Arctic Peat Soil | MHNRFPSPVKVLVELLFVVSVIMICMGSAFGKLDEFVGHPILAFVIFCGAVFLWYRFQET |
Ga0209200_10153673 | 3300025784 | Anaerobic Digestor Sludge | MSSRYPSPVKVLVELLFVVSVILICAGAAFGKLDEFVGHPMLAFVLFCGAVFLWYRFQET |
Ga0210092_10106261 | 3300025978 | Natural And Restored Wetlands | MHNRIPSPMKVLVELLFVVSVIMICLGSAFGKVDEFVGHPILALVIFCGAVFLWYRFQET |
Ga0209312_10568572 | 3300026195 | Anaerobic Biogas Reactor | MNSQYPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVLFC |
Ga0209612_10780421 | 3300026250 | Anaerobic Biogas Reactor | VLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVLFCGAVFLWYRFQET |
Ga0209703_12266191 | 3300027723 | Freshwater Sediment | MHNRFPSPMKVLVELLFVVSVIMICLGSAFGKLDEFVGHPILALVIFCGAVFLWYRFQET |
Ga0209464_102981082 | 3300027778 | Wetland Sediment | MHNRFPSPMKVLVELLFVVSVILICIGSSFGKLDEFIGHPILALVIFCGAVFLWYRFQET |
Ga0209397_100234382 | 3300027871 | Wetland | MHNRFPSPVKVLVELLFVVSVIMICLGSAFGKLDEFVGHPMLAFVIFCGAVFLWYRFQET |
Ga0209293_103882981 | 3300027877 | Wetland | MHNRFPSPVKVLVELLFVVSVIMICLGSAFGKLDEFVGHPMLALVIFCG |
Ga0209450_104231282 | 3300027885 | Freshwater Lake Sediment | MHNRFPSPMKVLVELLFVVSVILICLGSAVGKLDEFVGHPMLALVIFCGAVFLWYRFQET |
Ga0209253_101686542 | 3300027900 | Freshwater Lake Sediment | MHHRFPSPMKVLVELLFVVSVIMICMGSAFGKLDEFVGHPILALVIFCGAVFLWYRFQET |
Ga0209048_100273822 | 3300027902 | Freshwater Lake Sediment | MHHKFPSPMKVLVELLFVVSVIMICMGSAFGKLDEFVGHPILALVIFCGAVFLWYRFQET |
Ga0209048_100615561 | 3300027902 | Freshwater Lake Sediment | PSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPVLAFVIFCGAVFLWYRFQET |
Ga0209048_100637701 | 3300027902 | Freshwater Lake Sediment | MHNRFLSPVTLFVELLFVVSVIMICMGAAFGKLDEFVGHPILAFVILCVAVFLWYRFQET |
Ga0209048_102836441 | 3300027902 | Freshwater Lake Sediment | MHNRFPSPLKVLVELLFVVSVIMICMGSAFGKLDEFVGHPLLAFVIFCGAVFLWYRFQET |
Ga0302244_10827471 | 3300028626 | Activated Sludge | RYYDTGRCAMNSRYPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVIFCGAVFLWYRFQET |
Ga0302238_11293392 | 3300028644 | Activated Sludge | RCAMNSQYPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVIFCGAVFLWYRFQET |
Ga0168097_10556781 | 3300029255 | Biosolids | GRCAMNSQYPSPVKVLVELLFVVSVILICIGAAFGKLDEFVGHPMLAFVLFCGAVFLWYRFQET |
Ga0315290_100327231 | 3300031834 | Sediment | MHNRFPSPMKVLVELLFVVAVIMICMGSAFGKLDEFVGHPILALVIFCGAVFLWYRFQET |
Ga0315295_101348322 | 3300032156 | Sediment | MHNRFPSPMKVLVELLFVVSVIMICMGSAFGKLDEFIGHPILALVIFCGAVFLWYRFQET |
Ga0335085_107522711 | 3300032770 | Soil | MHNRYPSPVKLFVELLFVVSVIVICMGAAFGKLDEFIGHPVLAFVILCAAVFLWYRFQET |
Ga0335069_122648621 | 3300032893 | Soil | MHNRYPSAVKLFVELLFVVSVIMICMGAAFGKLDDFVGHPVLAFVIFCAAIFLWYRFQE |
Ga0335084_107956301 | 3300033004 | Soil | NDTGRCAMQNRFPSPVKVLVELLFVVSVILICIGAAFGKLDDFVGHPVLAFVIFCGAVFLWYRFQET |
Ga0316605_114216201 | 3300033408 | Soil | MHNRFPSPMKVLVELLFVVSVIMICLGSAFGKLDEFVGHPMLALVIFCGAVFLWYRFQE |
Ga0316605_116536201 | 3300033408 | Soil | VLVELLFVVSVIMICLGSAFGKLDEFVGHPILALVIFCGAVFLWYRFQET |
Ga0316625_1002882122 | 3300033418 | Soil | VKVLVELLFVVSVIMICLGSAFGKLDEFVGHPMLALVIFCGAVFLWYRFQET |
Ga0316601_1025668582 | 3300033419 | Soil | MHNRFPSPTKVLVELLFVVSVIMICLGSAFGKVDEFVGHPILALVIFCGAVFLWYRFQET |
Ga0326726_100233745 | 3300033433 | Peat Soil | MRNKFPSPVKVLVELLFVVSVILICMGAAFGKLDEFVGHPVLAFVIFCGAVFLWYRFQET |
Ga0326726_100373843 | 3300033433 | Peat Soil | MHNRYPSPVKVLVELLFVASVILICIGAAFGKLDEFVGHPVLAFVIFCCAVFLWYQFQET |
Ga0316613_112585941 | 3300033434 | Soil | MHNRFPSPMKVLVELLFVVSVILICLGSAFGKLDEFVGHPMLALVIFCGAVFLW |
Ga0316620_102141823 | 3300033480 | Soil | MHNRFPSPVKVLVELLFVVSVIMICLGSAFGKLDEFVGHPMLALVIFCGAVFLWYRF |
Ga0316624_104779881 | 3300033486 | Soil | VELLFVVSVILICIGAAFGKLDEFVGHPVLAFVIFCGAVFLWYRFQET |
Ga0316630_109730421 | 3300033487 | Soil | MHNRFPSPMKVLVELLFVVSVIMICLGSAFGKLDEFVGHPILALVIFCGAV |
Ga0316630_111181071 | 3300033487 | Soil | FPSPMKVLVELLFVVSVIMICLGSAFGKLDEFVGHPILALVIFCGAVFLWYRFQET |
Ga0316631_103340511 | 3300033493 | Soil | MHNRFPSPVKVLVELLFVVSVIMICLGSAFGKLDEFVGHPMLALVIFCGAVFLWY |
Ga0316628_1004705103 | 3300033513 | Soil | MHNRFPSPTKVLVELLFVVSVIMICLGSAFGKLDEFVGHPLLALVIFCGAVFLWYRFQET |
Ga0370479_0000260_2786_2968 | 3300034123 | Untreated Peat Soil | MHNRFPSPVKVLVELLFVVSVIMICVGSAFGKLDEFVGHPILALVIFCGAVFLWYRFQET |
Ga0370479_0222816_1_135 | 3300034123 | Untreated Peat Soil | MKVLVELLFVVSVIMICMGSAFGKLDEFVGHPILALVIFCGAVFL |
Ga0370486_111405_370_528 | 3300034126 | Untreated Peat Soil | MKVLVELLFVVSVIMICMGSAFGKLDEFVGHPILALVIFCGAVFLWYRFQET |
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