NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099341

Metagenome / Metatranscriptome Family F099341

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099341
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 46 residues
Representative Sequence VNSVTAGDIFIGTNTITTVSGETINIKANVNFSGTVLGLPLAYNYFLR
Number of Associated Samples 92
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 1.00 %
% of genes near scaffold ends (potentially truncated) 95.15 %
% of genes from short scaffolds (< 2000 bps) 84.47 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (68.932 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh
(24.272 % of family members)
Environment Ontology (ENVO) Unclassified
(38.835 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(87.379 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58
1OpTDRAFT_100952971
2NpDRAFT_101275152
3JGI26079J46598_11057701
4JGI26081J50195_11002121
5JGI26086J50260_10575581
6JGI26273J51734_100983411
7JGI26085J52751_10189073
8Ga0066612_11057642
9Ga0073579_15527043
10Ga0078893_117443471
11Ga0070743_101515063
12Ga0075506_16829323
13Ga0075510_108356982
14Ga0098054_11955583
15Ga0070754_101041441
16Ga0075479_102827813
17Ga0098051_11643363
18Ga0070753_11967611
19Ga0105050_106606871
20Ga0102942_11677661
21Ga0102927_13669661
22Ga0070751_13893211
23Ga0102824_10073811
24Ga0102827_10811691
25Ga0102951_11547233
26Ga0102960_11693951
27Ga0102963_13377311
28Ga0102892_10877561
29Ga0115566_103443481
30Ga0102815_106972581
31Ga0114994_107068893
32Ga0115008_106761321
33Ga0115572_105984313
34Ga0115103_11413121
35Ga0129348_13027972
36Ga0129345_12575121
37Ga0136656_10402584
38Ga0136549_103581233
39Ga0129344_10385783
40Ga0129344_11790861
41Ga0116813_10823632
42Ga0117790_10346133
43Ga0182070_12494281
44Ga0181409_12516321
45Ga0181422_11705833
46Ga0181379_10107611
47Ga0181565_109111912
48Ga0181583_100266411
49Ga0181582_101843621
50Ga0181585_100593471
51Ga0181585_101707324
52Ga0181569_110914102
53Ga0181606_100589931
54Ga0181567_102029163
55Ga0181567_102982143
56Ga0181591_106105151
57Ga0181566_103174221
58Ga0181566_106212403
59Ga0181566_110348391
60Ga0180037_11304581
61Ga0182066_10682674
62Ga0182059_11007241
63Ga0181595_102214313
64Ga0181575_104238541
65Ga0181599_10706774
66Ga0181570_104171751
67Ga0211511_10927183
68Ga0211488_101993762
69Ga0211477_103130471
70Ga0211577_105434643
71Ga0206677_102526423
72Ga0213867_10307774
73Ga0213867_12423961
74Ga0213859_103039763
75Ga0222718_100353426
76Ga0222718_101675081
77Ga0222718_101760663
78Ga0222719_103405783
79Ga0222719_105701823
80Ga0222719_107529771
81Ga0255764_102665453
82Ga0255774_101349454
83Ga0255761_100734111
84Ga0255761_104657623
85Ga0255759_107073322
86Ga0228633_11161762
87Ga0228675_10503321
88Ga0233444_101202353
89Ga0228629_10950641
90Ga0244775_103181524
91Ga0209138_100458715
92Ga0209659_11408121
93Ga0208162_11107613
94Ga0208150_11800263
95Ga0209555_102251133
96Ga0209923_10056055
97Ga0228644_10719123
98Ga0208437_10541193
99Ga0209090_100699704
100Ga0228615_10601683
101Ga0307488_100409375
102Ga0307489_100132957
103Ga0348335_193051_396_503
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 9.21%    β-sheet: 0.00%    Coil/Unstructured: 90.79%
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51015202530354045VNSVTAGDIFIGTNTITTVSGETINIKANVNFSGTVLGLPLAYNYFLRSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
31.1%68.9%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

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Freshwater
Marine
Marine
Seawater
Aqueous
Seawater
Marine Surface Water
Sackhole Brine
Freshwater To Marine Saline Gradient
Marine
Seawater
Estuarine
Salt Marsh
Marine
Estuarine
Estuarine Water
Pelagic Marine
Freshwater And Marine
Seawater
Pond Water
Water
Marine Methane Seep Sediment
Epidermal Mucus
6.8%10.7%7.8%2.9%7.8%5.8%24.3%4.9%5.8%2.9%4.9%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
OpTDRAFT_1009529713300000928Freshwater And MarineVVNSVTAGDVYIGTNQITTLTGSAINIDANVVFTGTLLGTPLAYNYFLR*
NpDRAFT_1012751523300000929Freshwater And MarineVVNSVTAGDIFVGADTITSLSGAPINIKANIVFSGTVLGLPLAYNYFLK*
JGI26079J46598_110577013300003216MarineIFVGSDTITSLTGDAINIKANVVFSGTVLGLPLAYNYFLR*
JGI26081J50195_110021213300003346MarineIGGGGASLNVNSVTAGDIFIATNTITTVSGELINIKARVNFQGGVLGLPLAYNYMLR*
JGI26086J50260_105755813300003410MarineATLVVNSVTAGDVFIGTDTITTVSGAAINIKANVVFQGTVLGIPLAYNYFLR*
JGI26273J51734_1009834113300003620MarineIGGGGAALNVNSVTAGDIFISSNIITTASGELINITANMNFTGPVTGYPLAYQYFLR*
JGI26085J52751_101890733300003908MarineASLNVNSVTAGDIFIATNTITTVSGELINIKARVNFQGGVLGLPLAYNYMLR*
Ga0066612_110576423300004642MarineGGGASLNVNSVTAGDIFINTNQITTVSGETINIKANVNFSGSVLGLPLAYNYMLR*
Ga0073579_155270433300005239MarineASLVVNSVTAGDIFINGTQITTVSGATINIKANVNFTKSVLGLPLAYNYFLR*
Ga0078893_1174434713300005837Marine Surface WaterGASLNVNTVTAGDIFIGTNQITTVTGTTININATVNFKGGVVGLPLAINYMLR*
Ga0070743_1015150633300005941EstuarineFINTNQITTVSGEQINIKANVNFTGSVLGLPMAYNYFLR*
Ga0075506_168293233300006401AqueousVVNSVTSGDIFIGGTQITTLTGSTINIKANVNFTKTVLGLPLAYNYFLR*
Ga0075510_1083569823300006405AqueousQITTLTGSTINIKANVNFTKTVLGLPLAYNYFLR*
Ga0098054_119555833300006789MarineFIGGTQITTVSGSPITIKANIVFSGTVLGYPLAWNYYQR*
Ga0070754_1010414413300006810AqueousLIVNSVTAGDIFIGTNQITTVTGQPINIKANVNFTGSVLGLPLAFNYLFR*
Ga0075479_1028278133300006870AqueousIVNSVTAGDIFIGTNQITTVTGQPINIKANVNFTGSVLGLPLAFNYLFR*
Ga0098051_116433633300006924MarineQITTVSGEQINIKANVNFTGSVLGLPMAYNYFLR*
Ga0070753_119676113300007346AqueousGTQITTLTGSTINIKANVNFTKTVLGLPLAYNYFLR*
Ga0105050_1066068713300007516FreshwaterVNSVTAGDIFIGADTITTLSGSPININANVVFSGTVLGLPLAYNYFLR*
Ga0102942_116776613300007532Pond WaterSLNVNSVTAGDIFIGGSQITAISGDPINIQANIVYRGSVLGIPLAYQYFLR*
Ga0102927_136696613300007611Pond WaterGGGASLNVNSVTAGDIFIGGSQITAISGDPINIKANIVYRGSVLGIPLAYQYFLR*
Ga0070751_138932113300007640AqueousGGGASLVVNSVTSGDIFIGGTQITTLTGSTINIKANVNFTKTVLGLPLAYNYFLR*
Ga0102824_100738113300007681EstuarineGASLNVNSVTAGDIFINTNQITTVSGETINIKANVNFSGSVLGLPLAYNYMLR*
Ga0102827_108116913300007715EstuarineTNQITTVSGETINIKANVNFSGSVLGLPLAYNYMLR*
Ga0102951_115472333300007725WaterNSVTAGEIFIGTDTITTVSGNPINIKANVLFTGTVLGLPLAYNYFLR*
Ga0102960_116939513300009000Pond WaterGGGATLNVNSVTAGDIFLGTNTITTVSGETINIKANVNFTGTLLGLPLAYNYFLR*
Ga0102963_133773113300009001Pond WaterLNVNTLTAGDIFIGTDTITTVDGEVINIIANVNFTGGVLGLPLAYNFLLK*
Ga0102892_108775613300009057EstuarineNVNSVTAGDIFINTNQITTVSGETINIKANVNFSGSVLGLPLAYNYMLR*
Ga0115566_1034434813300009071Pelagic MarineVVNSVTAGDIFINGTQITTVSGATINIKANVNFTKSVLGLPLAYNYFLR*
Ga0102815_1069725813300009080EstuarineTITTLSGSTININANVVFNGTVLGLPLAYNYFLR*
Ga0114994_1070688933300009420MarineGATLNVNSVTAGDIFIGADTITTLSGNAININANVVFNGTVLGLPLAYNYFLR*
Ga0115008_1067613213300009436MarineGDIFIGADTITSLSGEPINIKANIVFSGTVLGLPLAYNYFLK*
Ga0115572_1059843133300009507Pelagic MarineTAGDIFVGGSTITTLSGSAININANVVFSGTVLGLPLAYNYFLR*
Ga0115103_114131213300009599MarineIFINTNQITTVSGELININANVNFTKSVTGIPLALNYMLR*
Ga0129348_130279723300010296Freshwater To Marine Saline GradientNTVTAGDIFIGTNVITTLENSTINIRATTNFVGGVTGLPVAINYFLR*
Ga0129345_125751213300010297Freshwater To Marine Saline GradientSTQITTVSGATINIKANVNFTGSVLGLPLAFNYLFR*
Ga0136656_104025843300010318Freshwater To Marine Saline GradientSLIVNTVTAGSIFIGTNVITTVDNSVINIKAKLNFEGTVIGTPIAYNYFLR*
Ga0136549_1035812333300010389Marine Methane Seep SedimentIAGTQITTVTGAPINIKANVNFQGTVLGLPIAYNYYFR*
Ga0129344_103857833300012520AqueousIGTNQITTVTGQPINIKANVNFTGSVLGLPLAFNYLFR*
Ga0129344_117908613300012520AqueousGTQITTVSGALINIKANVQFQGAVLGTPLAYNYFLR*
Ga0116813_108236323300013253MarineGGGQASLIVNSLTAGDIFINTTQITTITGSTINIKANVNFTKSVLGLPLAYNYFLR*
Ga0117790_103461333300014042Epidermal MucusGASLNVNSVTAGDIFIDTNRITSVTGGVININARLNFTESVVGLPIAYNYFLR*
Ga0182070_124942813300016758Salt MarshQASLIVNSITAGDIYIAGTQITTVTGAPINIKANVNFQGTVLGLPIAYNYYFR
Ga0181409_125163213300017758SeawaterIIVNSVTAGDIFINGTQITTVSGATINIKANVQFQGAVLGTPLAYNYFLR
Ga0181422_117058333300017762SeawaterGGGATLNVNSVTAGDIFVNTNQITTVSGEQINIKANVNFTGSVLGLPMAYNYFLR
Ga0181379_101076113300017783SeawaterGGATLNVNSVTAGDIFIGTDTITTVSGDPINIKANVVFSGSVLGLPLAYNLFLR
Ga0181565_1091119123300017818Salt MarshVTAGDIFINTDQITTVSGEQINIKANVNFTGQVLGLPLAFNYFIR
Ga0181583_1002664113300017952Salt MarshNTNQITTVSGEKININANVNFTKTVLGLPIAYNYFLR
Ga0181582_1018436213300017958Salt MarshNVNTVTAGSIFIGTNVITTVDNSVINIKAKLNFEGTVIGTPIAYNYFLR
Ga0181585_1005934713300017969Salt MarshNTLTAGDIFIGTDTITTVDGEVINITANVNFTGGVLGLPLAYNFLLK
Ga0181585_1017073243300017969Salt MarshNVNTITAGDIFIGTNEITTVTGNSIRINATVEFRGGVAGYPLASALFMR
Ga0181569_1109141023300017986Salt MarshGQASLIVNSITAGDIYIAGTQITTVTGAPINIKANVNFQGTVLGLPIAYNYYFR
Ga0181606_1005899313300018048Salt MarshNSVTAGDIFINTNQITTVSGEQINIKANVNFTGSVLGLPMAYNYFLR
Ga0181567_1020291633300018418Salt MarshGGGGASLNVNSVTAGDIFIATNTITTVSGELINIKARVNFQGGVLGLPLAYNYMLR
Ga0181567_1029821433300018418Salt MarshGASLNVNTLTAGDIFIGTDTITTVDGEVINITANVNFTGGVLGLPLAYNFLLK
Ga0181591_1061051513300018424Salt MarshISTDTITTVSGSPININANVVFTGSVLGLPLAYNYFLR
Ga0181566_1031742213300018426Salt MarshDIFIGTNQITTVSGSPINIKANVVFEGTVLGLPLAYNYYLRT
Ga0181566_1062124033300018426Salt MarshLNVNSVTAGDIFINTDQITTVSGEQINIKANVNFTGQVLGLPLAFNYFIR
Ga0181566_1103483913300018426Salt MarshTAGDIFIGSNLITTVSGSQINIKANVLFTGSVLGLPLAYNYFLR
Ga0180037_113045813300019214EstuarineTLVVNSVTAGDIFIGGTQITTVSGSPITIKANIVFSGTVLGYPLAWNYYQR
Ga0182066_106826743300019262Salt MarshVTAGDIFIGGTQITTVSGSPINIRANVVFSGTVLGYPLAWNYFQR
Ga0182059_110072413300019272Salt MarshTDQITTVSGEQINIKAIVNFTGQVLGLPLAFNYFIR
Ga0181595_1022143133300020053Salt MarshFINSTQITTVSGATINIKANVNFTKSVLGLPLAYNYFLR
Ga0181575_1042385413300020055Salt MarshFVNTNQITTVSGEQINIKANVNFSKSVLGLPLAYNYFLR
Ga0181599_107067743300020178Salt MarshINSTQITTVSGATINIKANVNFTKSVLGLPLAYNYFLR
Ga0181570_1041717513300020207Salt MarshLIVNSITAGDIYIAGTQITTVTGAPINIKANVNFQGTVLGLPIAYNYYFR
Ga0211511_109271833300020349MarineIGGGGASLNVNTVTAGDIFIGTNQITTVTGTTININATVNFKGGVVGLPLAINYMLR
Ga0211488_1019937623300020362MarineAGDIFIGTNQITTVTGSTININATVNFKGGVVGLPLAINYMLR
Ga0211477_1031304713300020374MarineLNVNTVTAGDIFIGTNQITTVTGTTININATVNFKGGVVGLPLAINYMLR
Ga0211577_1054346433300020469MarineVNSVTAGDIFINTNQITTVSGEQINIKANVNFTGSVLGLPIAYNYFLR
Ga0206677_1025264233300021085SeawaterVTAGDIFIGGTQITTVSGSPITIKANIVFSGTVLGYPLAWNYYQR
Ga0213867_103077743300021335SeawaterGDIFIANNVITTIDSSLINIKARVNFQGGVTGLPLAYNYMLR
Ga0213867_124239613300021335SeawaterGADTITTLSGSPININANVVFNGTVLGLPLAYNYFLR
Ga0213859_1030397633300021364SeawaterVNSVTAGDIFIGTNTITTVSGETINIKANVNFSGTVLGLPLAYNYFLR
Ga0222718_1003534263300021958Estuarine WaterNGTQITTVSGATINIKANVQFQGAVLGTPLAYNYFLR
Ga0222718_1016750813300021958Estuarine WaterDIFIGADTITTLSGSAININANVVFSGTVLGLPLAYNYFLR
Ga0222718_1017606633300021958Estuarine WaterVTAGDIFLGTNTITTVSGETINIKANVNFTGTLLGLPLAYNYFLR
Ga0222719_1034057833300021964Estuarine WaterVTAGDIFVNTNQITTVSGEQINIKANVNFTGSVLGLPMAYNYFLR
Ga0222719_1057018233300021964Estuarine WaterSVTAGDIFIASDTITTVSTSPINIKANVVFSGTVLGLPLAYNYFLR
Ga0222719_1075297713300021964Estuarine WaterGGASLNVNSVTAGDIFIGTNTITTVSGETINIKANVNFSGTVLGLPLAYNYFLR
Ga0255764_1026654533300023081Salt MarshNSVTAGDIFIATNTITTVSGELINIKARVNFQGGVLGLPLAYNYMLR
Ga0255774_1013494543300023087Salt MarshLNVNSVTAGDIFVNTNQITTVSGEQINIKANVNFSKSVLGLPLAYNYFLR
Ga0255761_1007341113300023170Salt MarshTITAGDIFIGTNEITTVTGNSIRINATVEFRGGVAGYPLASALFMR
Ga0255761_1046576233300023170Salt MarshTLTAGDIFIGTDTITTVDGEVINITANVNFTGGVLGLPLAYNFLLK
Ga0255759_1070733223300023178Salt MarshSVTAGDVFIGADTITTLSEGTLNIKANVVFSGTVLGLPLAYNYFLR
Ga0228633_111617623300024228SeawaterGGGGATLVVNSVTAGDIFIGGTQITTVSGSPITIKANIVFSGTVLGYPLAWNYYQR
Ga0228675_105033213300024247SeawaterTAGDIFVNTNQITTVSGEQINIKANVNFTGSVLGLPMAYNYFLR
(restricted) Ga0233444_1012023533300024264SeawaterGATLNVNSVTAGDIFIGADTITTLSGSAININANVVFSGTVLGLPLAYNYFLR
Ga0228629_109506413300024296SeawaterIFIGGTQITTVSGSPITIKANIVFSGTVLGYPLAWNYYQR
Ga0244775_1031815243300024346EstuarineAQLNVNSVTAGDIFVNTNQITTVSGEKININANVNFTKTVLGLPIAYNYFLR
Ga0209138_1004587153300025617MarineNVNSVTAGDVFVGSDIITTLSGSAININANVVFNGTVLGLPLAYNYFLR
Ga0209659_114081213300025658MarineIFVGADTITTLSGATLNIKANVVFSGTVLGVPLAYNYFLR
Ga0208162_111076133300025674AqueousDIFINSTQITTVSGATINIKANVNFTKSVLGLPLAYNYFLR
Ga0208150_118002633300025751AqueousIVNSVTAGDIFIGTNQITTVTGQPINIKANVNFTGSVLGLPLAFNYLFR
Ga0209555_1022511333300025879MarineNQITTVSGETINIKANVNFSGSVLGLPLAYNYMLR
Ga0209923_100560553300026105Pond WaterIGGGGASLNVNSVTAGDIFIGGSQITAISGDPINIQANIVYRGSVLGIPLAYQYFLR
Ga0228644_107191233300026453SeawaterGDIFINTNQITTVSGETINIKANVNFSGSVLGLPLALNYMLR
Ga0208437_105411933300027525EstuarineDTITTLSGSPININANVVFSGSVLGLPLAYNYFLR
Ga0209090_1006997043300027813MarineVTAGDIFINGTQITTVSGATINITANVNFTKSVLGLPLAYNYFLR
Ga0228615_106016833300028418SeawaterIFINTNQITTVSGETINIKANVNFSGSVLGLPLALNYMLR
Ga0307488_1004093753300031519Sackhole BrineGGATLNVNSVTAGDIFIGADTITTLSGNAININANVVFNGTVLGLPLAYNYFLR
Ga0307489_1001329573300031569Sackhole BrineGNTITTLSGSAINIRANVVFSGTVLGLPLAYNYFLR
Ga0348335_193051_396_5033300034374AqueousTQITTLTGSTINIKANVNFTKTVLGLPLAYNYFLR


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