NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099331

Metagenome / Metatranscriptome Family F099331

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099331
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 56 residues
Representative Sequence DGKVKKRTTQKGVSKEISNSTLVVASDGTFNQQTASSALKKVCEAIIKDLLK
Number of Associated Samples 91
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 96.12 %
% of genes from short scaffolds (< 2000 bps) 74.76 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (60.194 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh
(33.981 % of family members)
Environment Ontology (ENVO) Unclassified
(36.893 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(91.262 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.
1ACM19_1004543
2GOS2229_10135802
3JGI26088J50261_10655741
4JGI26084J50262_10976152
5Ga0055584_1023721451
6Ga0075510_108616142
7Ga0075476_100653932
8Ga0075477_102784951
9Ga0075475_100252285
10Ga0075475_102026821
11Ga0070746_101229422
12Ga0099848_12118492
13Ga0102825_10422911
14Ga0102859_11593521
15Ga0105749_11299602
16Ga0105748_104130142
17Ga0075480_100262757
18Ga0075480_100542741
19Ga0102813_11863171
20Ga0102826_11831162
21Ga0115551_14026122
22Ga0129342_10834152
23Ga0129351_11360531
24Ga0129351_12261871
25Ga0163111_118131782
26Ga0182045_13499711
27Ga0182051_11978151
28Ga0182047_15123912
29Ga0182046_10470571
30Ga0182095_14940711
31Ga0182090_17748931
32Ga0181412_10192093
33Ga0181412_10193823
34Ga0181390_10262841
35Ga0181390_11617482
36Ga0181388_10457332
37Ga0187219_10784031
38Ga0181394_11758442
39Ga0181565_101372852
40Ga0181565_105222861
41Ga0181552_101592761
42Ga0181583_100333811
43Ga0181590_101049273
44Ga0181569_100688161
45Ga0181569_104204992
46Ga0181606_102425041
47Ga0181572_107617892
48Ga0181568_101616942
49Ga0181568_108258802
50Ga0181562_101283441
51Ga0181575_102220102
52Ga0181575_104816951
53Ga0181574_100692961
54Ga0181602_100306891
55Ga0181602_100494371
56Ga0181597_104275311
57Ga0211543_104914192
58Ga0208223_10302601
59Ga0213860_101341072
60Ga0213866_106202671
61Ga0222716_102472022
62Ga0222715_100668791
63Ga0255755_12254832
64Ga0255765_10511914
65Ga0255753_11073401
66Ga0255758_103758061
67Ga0255752_101904441
68Ga0255784_100846441
69Ga0255751_101974951
70Ga0255761_100583904
71Ga0255761_100616431
72Ga0255772_100699894
73Ga0255763_11640191
74Ga0228696_10319792
75Ga0233399_10557101
76Ga0228653_10050891
77Ga0228678_10247211
78Ga0228660_10437041
79Ga0228658_11706402
80Ga0228654_10640862
81Ga0228632_11498052
82Ga0209652_11119791
83Ga0209771_11267021
84Ga0208150_10438672
85Ga0209193_10371432
86Ga0208547_10961702
87Ga0208547_10981321
88Ga0209308_100320996
89Ga0208973_10540452
90Ga0209037_11245972
91Ga0208305_100073417
92Ga0209090_100518321
93Ga0209990_100439261
94Ga0209550_103694612
95Ga0228674_12012851
96Ga0228606_11350492
97Ga0228643_11506651
98Ga0307489_111179271
99Ga0307993_10077755
100Ga0308008_10122253
101Ga0315332_105406761
102Ga0315902_101797623
103Ga0335031_0414478_667_843
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 25.00%    β-sheet: 2.50%    Coil/Unstructured: 72.50%
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Variant

5101520253035404550DGKVKKRTTQKGVSKEISNSTLVVASDGTFNQQTASSALKKVCEAIIKDLLKSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
39.8%60.2%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater
Freshwater Lake
Freshwater
Freshwater
Marine
Marine Plankton
Surface Seawater
Aqueous
Seawater
Sackhole Brine
Freshwater To Marine Saline Gradient
Estuary Water
Marine
Seawater
Estuarine
Salt Marsh
Marine
Marine
Estuarine Water
Pelagic Marine
Pelagic Marine
Seawater
11.7%12.6%2.9%6.8%4.9%34.0%2.9%6.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ACM19_10045433300001818Marine PlanktonLQEGKKIKKRVTKKGVSKEISNSTLVVASDGSFNQQTASNALKKVLVQIIEDLL*
GOS2229_101358023300001963MarineLQIGNKVKKRTTKKGVSKEISTSTLVVATDGQFNQQTASNALKKVLVEIVEDLLK*
JGI26088J50261_106557413300003409MarineIIAIGELQVGKKVKKKTVQKGTSKEISTSTLVVASDGTFNQQTASIALKKVLVQIVEELLQ*
JGI26084J50262_109761523300003427MarineEVKKRTTQKGVSKEISNSTLVIASDGTFNQQTASTLVIASDGTFNQQTASSALKKVCEAIIKDLLG*
Ga0055584_10237214513300004097Pelagic MarineLEIKGKVKKRTTQKGSSKEISTSTLVVASDGTFNQQTASNSLKKVLEAIIKDLLK*
Ga0075510_1086161423300006405AqueousIIAIGELQIGNKVKKRTTKKGVSKEISTSTLVVASDGQFNQQTASNALKKVLVEIVEDLLK*
Ga0075476_1006539323300006867AqueousKKVKKRVTKKGVSKEISNSTLVVASDGSFNQQTASSAVKKVLVEIIKDLL*
Ga0075477_1027849513300006869AqueousKRVTKKGVSKEISNSTLVVASDGSFNQQTASSAVKKVLVEIIKDLL*
Ga0075475_1002522853300006874AqueousQVGKKVKKRVTKKGVSKEISNSTLVVASDGSFNQQTASSAVKKVLVEIIKDLL*
Ga0075475_1020268213300006874AqueousQVGKKVKKRVTKKGVSKEISNSTLVVASDGSFNQQTASSALKKVLVQIIEDLL*
Ga0070746_1012294223300006919AqueousVKGKVKKRTTQKGQSKTISTSTLVVAEDGTFNQQTASIALKKVCEQIIKELL*KKYYYF*
Ga0099848_121184923300007541AqueousVIAVGELQKGKKVIKKTTQKGVSKEISNSTLVVASDGSFNQQTASIALKKVLIQIVEDLL
Ga0102825_104229113300007655EstuarineVKKRTTKKGSSKEISTSTLVVASDGQFNQQTASNSLKKVLEAIIKDLLK*
Ga0102859_115935213300007708EstuarineKVKKRTTQRGTSKTISTSTLVVAQDGTFNQQTASIALKKVCEAIIKDLL*
Ga0105749_112996023300007864Estuary WaterIGELEVNGKVKKRTTQRGTSKTISTSTLVVAQDGTFNQQTASIALKKVCEQIIKDLL*
Ga0105748_1041301423300007992Estuary WaterELEIKGKVKKRTTKKGSSKEISTSTLVVASDGQFNQQTASNSLKKVLEAIIKDLLK*
Ga0075480_1002627573300008012AqueousLQVGKKVKKRVTKKGVSKEISNSTLVVASDGSFNQQTASSALKKVLVQIIEDLL*
Ga0075480_1005427413300008012AqueousLQVGKKVKKRVTKKGVSKEISNSTLVVASDGSFNQQTASSAVKKVLVEIIKDLL*
Ga0102813_118631713300009003EstuarineLEVNCKVKKRTIQKGTSKTISTSTLVVAEDGTFNQQTASIALKKVCEKIIKDLL*
Ga0102826_118311623300009054EstuarineIAIGELEVNGKVKKRTTQRGTSKTISTSTLVVAQDGTFNQQTASIALKKVCEAIIKDLL*
Ga0115551_140261223300009193Pelagic MarineVVDGKVKKRTTQKGVSKEISNSTLVVASDGTFNQQTASNALKKVCEQIIKELLK*
Ga0129342_108341523300010299Freshwater To Marine Saline GradientELEIDGKVKKKTTQSGQSKEISTSTLVVASDGTFNQQTASNALKKVLVQIVEDLLK*
Ga0129351_113605313300010300Freshwater To Marine Saline GradientKRTTQKGVSKEISNSTLVIASDGTFNQQTASSALKKVCEAIIKDLLG*
Ga0129351_122618713300010300Freshwater To Marine Saline GradientATQIIAIGELQVGKKVKKRVTKKGVSKEISNSTLVVASDGSFNQQTASSALKKVLVQIIEDLL*
Ga0163111_1181317823300012954Surface SeawaterELVKGGKVVKRTTQKGQSKEISNSTLIVASDGTFNQQTASIALKRVCESIIKDLLL*
Ga0182045_134997113300016726Salt MarshIIAIGELQKGKKVKKKTVQKGTSKEISTSTLVVASDGTFNQQTASIALKKVLVQIVEELLQXKTY
Ga0182051_119781513300016727Salt MarshGELQKGKKVKKKTVQKGTSKEISTSTLVVASDGTFNQQTASIALKKVLVQIVEELLQ
Ga0182047_151239123300016737Salt MarshQTQIIAIGELQKGKKVKKKTVQKGTRKEISTSTLVVASDGTFNQQTASIALKKVLVQIVEELLQ
Ga0182046_104705713300016776Salt MarshKGKKVKKKTVQKGTSKEISTSTLVVASDGTFNQQTASIALKKVLVQIVEELLQXKTY
Ga0182095_149407113300016791Salt MarshATQIIAIGELQEGKKIKKKTTQKGVSKEISNSTLVVASDGSFNQQTASIALKKVLAQIVGELL
Ga0182090_177489313300016797Salt MarshKTTQKGVSKEISNSTLVVASDGSFNQQTASIALKKVLAQIVGELL
Ga0181412_101920933300017714SeawaterKKRTTQRGSSKEISTSTLVVASDGQFNQQTASNSLKKVLEAIIKDLLKXKNY
Ga0181412_101938233300017714SeawaterKKRTTQRGSSKEISTSTLVVASDGQFNQQTASNSLKKVLEEIIKDLLK
Ga0181390_102628413300017719SeawaterKVKKRTTQKGTSKTISTSTLVVAQDGTFNQQTASIALKKVCEQIIKDLLXKKFYYY
Ga0181390_116174823300017719SeawaterGKVKKRTTQKGVSKTISTSTLVVADDGTFNQQTASIALKKLCENIIKDLL
Ga0181388_104573323300017724SeawaterTQIIAIGELEVNGKVKKRTIQKGTSKTISTSTLVVAEDGTFNQQTASIALKKVCEKIIKDLL
Ga0187219_107840313300017751SeawaterVKGKVRKSTVQKGTSKTISTSTLVVAQDGTFNQQTASIALKKVCEAIIKDLL
Ga0181394_117584423300017776SeawaterLTQIIAIGELEVNGKVKKRTTQKGTSKTISTSTLVVAQDGTFNQQTASIALKKVCEAIIKDLL
Ga0181565_1013728523300017818Salt MarshVDGKVKKRTTQKGVSKEISNSTLVVASDGTFNQQTASSALKKVCEAIIKDLLGXKKF
Ga0181565_1052228613300017818Salt MarshDGKVKKRTTQKGVSKEISNSTLVVASDGTFNQQTASSALKKVCEAIIKDLLK
Ga0181552_1015927613300017824Salt MarshTTKKGVSKEISTSTLVVASDGQFNQQTASIALKKVLVEIVEDLLK
Ga0181583_1003338113300017952Salt MarshKKRTTQKGVSKEISNSTLVVASDGTFNQQTASNALKKVCEQIIKDLLK
Ga0181590_1010492733300017967Salt MarshVVDGKVKKRTTQKGVSKEISNSTLVVASDGTFNQQTASNALKKVCEQIIKDLLKXKRFYY
Ga0181569_1006881613300017986Salt MarshNGKVKKRTTQKGTSRTISTSTLVVAEDGTFNQQTASIALKKLCEQIIKDLLLXRNFYH
Ga0181569_1042049923300017986Salt MarshAIGELVVDGKVKKRTTQKGVSKEISNSTLVVASDGTFNQQTASSALKKVCEAIIKDLLG
Ga0181606_1024250413300018048Salt MarshKIGNKVKKRTTKKGVSKEISTSTLVVASDGQFNQQTASIALKKVLVEIVEDLLK
Ga0181572_1076178923300018049Salt MarshAIGELQEGKKVKKRVTKKGVSKEISNSTLVVASDGSFNQQTASSALKKVLVQIVEDLL
Ga0181568_1016169423300018428Salt MarshAIGELVVDGKVKKRTTQKGVSKEISNSTLVVASDGTFNQQTASSALKKVCEAIIKDLLGXKKF
Ga0181568_1082588023300018428Salt MarshGELVVDGKVKKRTTQKGVSKEISNSTLVVASDGTFNQQTASSALKKVCEAIIKDLLK
Ga0181562_1012834413300019459Salt MarshKKVKKRVTKKGVSKEISNSTLVVASDGSFNQQTASSALKKVLVQIIEDLL
Ga0181575_1022201023300020055Salt MarshINGKVKKRTTKKGQSKEISTSTLVVASDGTFNQQTASNALKKVLVDIVEELLKXKNF
Ga0181575_1048169513300020055Salt MarshAIGELVVDGRVKKRTTQKGVSKEISNSTLVVASDGTFNQQTASSALKKVCEAIIKDLLG
Ga0181574_1006929613300020056Salt MarshXVVDGKVKKRTTQKGVSKEISNSTLVVASDGTFNQQTASNALKKVCEQIIKDLLKXKRFY
Ga0181602_1003068913300020173Salt MarshKVKKRTTKKGVSKEISTSTLVVASDGQFNQQTASIALKKVLVEIVEDLLKXKNYY
Ga0181602_1004943713300020173Salt MarshKVKKRTTKKGVSKEISTSTLVVASDGQFNQQTASIALKKVLVEIVEDLLK
Ga0181597_1042753113300020194Salt MarshDGKVKKRTTQKGVSKEISNSTLVVASDGTFNQQTASNALKKVCEQIIKDLLKXKRFYY
Ga0211543_1049141923300020470MarineGELVVNGKVKKKTTQKGQSKTISTSTLIVADDGTFNQQTASIALKKVCEAIINDLLK
Ga0208223_103026013300020519FreshwaterLVKNGKVIGKTIQKGQSKEVSVSTLVVADDGTFNQQTASIALKKVLEAIVKDLLK
Ga0213860_1013410723300021368SeawaterATQIIAIGELVVDGKVKKRTTQKGVSKEISNSTLVVASDGTFNQQTASSALKKVCEAIIKDLLG
Ga0213866_1062026713300021425SeawaterKVKKRTTKKGVSKEISTSTLVVASDGQFNQQTASNALKKVLVEIVEDLLK
Ga0222716_1024720223300021959Estuarine WaterNGKVIKRTVQKGQSKEVSVSTLVVADDGTFNQQTASIALKKVLEAIVKDLKLXKNYYFYY
Ga0222715_1006687913300021960Estuarine WaterIGELEINGKVKKKTTKKGTSKEISTSTLVVASDGTFNQQTASIALKKVLVEIVEDLLKXKNYY
Ga0255755_122548323300022909Salt MarshQTQIIAIGELQIGNKVKKRTTKKGVSKEISTSTLVVASDGQFNQQTASNALKKVLVEIVEDLLK
Ga0255765_105119143300022921Salt MarshKKRTTKKGVSKEISTSTLVVASDGQFNQQTASIALKKVLVEIVEDLLK
Ga0255753_110734013300022926Salt MarshAIGELQVKGKVKKKTTQKGESSEISTSTLVVADDGTFNQQTASIALKKVCVQIVEELLK
Ga0255758_1037580613300022928Salt MarshGKKVKKRVTKKGVSKEISNSTLVVASDGSFNQQTASSALKKVLVQIIEDLL
Ga0255752_1019044413300022929Salt MarshIGELKIGNKVKKRTTKKGVSKEISTSTLVVASDGQFNQQTASNALKKVLVEIVEDLLK
Ga0255784_1008464413300023108Salt MarshKVKKRTTQKGTSRTISTSTLVVAEDGTFNQQTASIALKKLCEQIIKDLLLXKDFYH
Ga0255751_1019749513300023116Salt MarshKVKKKTTKKGISKEISTSTLVVASDGQFNQQTASNALKKVLVEIVEDLLK
Ga0255761_1005839043300023170Salt MarshKKTTKKGISKEISTSTLVVASDGQFNQQTASNALKKVLVEIVEDLLKXKNY
Ga0255761_1006164313300023170Salt MarshTTQKGVSKEISNSTLVVASDGTFNQQTASNALKKVCEQIIKELLKXKRFYY
Ga0255772_1006998943300023176Salt MarshVKKKTTKKGISKEISTSTLVVASDGQFNQQTASNALKKVLVEIVEDLLKXKNY
Ga0255763_116401913300023273Salt MarshLQEGKKIKKKTTQKGVSKEISNSTLVVASDGSFNQQTASIALKKVLAQIVGELL
Ga0228696_103197923300023568SeawaterLEVNGKVKKRTTQRGTSKTISTSTLVVAQDGTFNQQTASIALKKVCEQIIKDLL
Ga0233399_105571013300024231SeawaterGKVKKRTTQRGTSKTISTSTLVVAQDGTFNQQTASIALKKVCEAIIKDLL
Ga0228653_100508913300024237SeawaterIIAIGELEVNGKVRKRTTQKGQSRTISTSTLVVAEDGTFNQQTASIALKKLCESIIKDLLXKKFYQF
Ga0228678_102472113300024244SeawaterLEIKGKVKKRTTQRGSSKEISTSTLVVASDGQFNQQTASNSLKKVLEAIIKDLLKXKNY
Ga0228660_104370413300024291SeawaterTQIIAIGELEVNGKVRKRTTQKGTSKTISTSTLVVTEDGTFNQQTASIALKKVCEKIIKNLL
Ga0228658_117064023300024297SeawaterTQRGSSKEISTSTLVVASDGQFNQQTASNSLKKVLEAIIKDLLKXKNY
Ga0228654_106408623300024316SeawaterQIIAIGELEIKGKVKKRTTQRGSSKEISTSTLVVASDGQFNQQTASNSLKKVLEAIIKDLLKXKNY
Ga0228632_114980523300024420SeawaterGELEVNGKVRKRTTQKGTSKTISTSTLVVTEDGTFNQQTASIALKKVCEKIIKNLL
Ga0209652_111197913300025684MarineAIGELEIKGKVKKRTTQKGSSKEISTSTLVVASDGQFNQQTASNSLKKVLEAIIKDLLK
Ga0209771_112670213300025701MarineKKRTTKKGVSKEISTSTLVVASDGQFNQQTASIALKKVLVQIVEELLQ
Ga0208150_104386723300025751AqueousFQLQIIAIGELQVGKKVKKRVTKKGVSKEISNSTLVVASDGSFNQQTASSALKKVLVQIIEDLL
Ga0209193_103714323300025816Pelagic MarineAIGELEVKGKVKKSTVQKGTSKTISTSTLVVAQDGTFNQQTASIALKKVCEAIIKELLXKKFYYF
Ga0208547_109617023300025828AqueousKKVKKRVTKKGVSKEISNSTLVVASDGSFNQQTASSAVKKVLVEIIKDLL
Ga0208547_109813213300025828AqueousKRVTKKGVSKEISNSTLVVASDGSFNQQTASSALKKVLVQIIEDLL
Ga0209308_1003209963300025869Pelagic MarineKRTTQKGVSKEISNSTLVVASDGTFNQQTASNALKKVCEQIIKELLK
Ga0208973_105404523300027506MarineKVKKRTTQRGTSKTISTSTLVVAQDGTFNQQTASIALKKVCEAIIKDLL
Ga0209037_112459723300027612MarineDVSQTQIIAIGELQVGKKVKKRTVQKGTSKEISTSTLVVASDGTFNQQTASIALKKVLVQIVEELLQ
Ga0208305_1000734173300027753EstuarineGKVKKKTTQKGESKEISTSTLVVADDGTFNQQTASIALKKVVSQIVEELLK
Ga0209090_1005183213300027813MarineIGELEVNGKVKKRTTQRGTSKTISTSTLVVAEDGTFNQQTASIALKKVCEAIIKDLL
Ga0209990_1004392613300027816Freshwater LakeEIIAMGELVKNGKVVNKSIQKGQSKEVSVSTLVVADDGTFNQQTASIALKKVLEAIVKDLLQ
Ga0209550_1036946123300027892Freshwater LakeVKNGKVVNKSIQKGQSKEVSVSTLVVADDGTFNQQTASIALKKVLEAIVKDLLK
Ga0228674_120128513300028008SeawaterIIAIGELEKNGKVKKRTTQKGQSKEISTSTLVVASDGQFNQQTASNSLKKVLEAIIKDLLKXKNY
Ga0228606_113504923300028135SeawaterKVKKRTTQRGSSKEISTSTLVVASDGQFNQQTASNSLKKVLEAIIKDLLKXKNY
Ga0228643_115066513300028396SeawaterLTQIIAIGELEVNGKVRKRTTQKGQSRTISTSTLVVAEDGTFNQQTASIALKKLCESIIKDLL
Ga0307489_1111792713300031569Sackhole BrineELLIDGKVVKRTVQKGQSKTISTSTLVVANDGTFNQQTASIALKKVCVAVLNKLFR
Ga0307993_100777553300031602MarineIIAVGELLIDGKVVKSTVQKGQSKTISTSTLVIADDGTFNQQTASIALKKVCVAVINKLF
Ga0308008_101222533300031687MarineAIGELQIGNKIKKRTVKKGTSKQISTSTLVVASDGTFNQQTASIALKKVLAQIIEELLQ
Ga0315332_1054067613300031773SeawaterEVKGKVRKSTVQKGTSKTISTSTLVVAQDGTFNQQTASIALKKVCEQIIKDLL
Ga0315902_1017976233300032093FreshwaterKVVNKSIQKGQSKEVSVSTLVVADDGTFNQQTASIALKKVLEAIVKDLLQ
Ga0335031_0414478_667_8433300034104FreshwaterIGELEKDGKIIKKTQQKGESTEISTSTLVIGEDGSLNQQTASIALKKLCESIVIDLLK


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