NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099264

Metagenome / Metatranscriptome Family F099264

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099264
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 58 residues
Representative Sequence MASQLKALRERADSQQVHADSQQERAEIQQERIDLAARELAEVSDRLQAAANALRESI
Number of Associated Samples 86
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 35.00 %
% of genes near scaffold ends (potentially truncated) 51.46 %
% of genes from short scaffolds (< 2000 bps) 91.26 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (50.485 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(19.417 % of family members)
Environment Ontology (ENVO) Unclassified
(25.243 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(56.311 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80
1JGI10216J12902_1046214201
2JGI10216J12902_1153941122
3Ga0055469_102714292
4Ga0063454_1000048002
5Ga0062593_1019746992
6Ga0062590_1018876321
7Ga0062595_1003932002
8Ga0062595_1008850472
9Ga0066683_103957962
10Ga0066679_102517771
11Ga0066678_107347982
12Ga0070714_1004511232
13Ga0070701_104411332
14Ga0070705_1014714301
15Ga0066687_102456331
16Ga0066687_103152973
17Ga0073909_103987351
18Ga0070741_103182703
19Ga0070741_105190991
20Ga0070672_1010853371
21Ga0070696_1018766442
22Ga0066701_106927182
23Ga0066708_100289534
24Ga0066654_100723972
25Ga0066706_108508072
26Ga0068856_1009962461
27Ga0066696_102740262
28Ga0066652_1002552753
29Ga0066652_1004107332
30Ga0066652_1010962201
31Ga0075417_105612432
32Ga0074051_113899541
33Ga0074049_101664281
34Ga0075425_1006941482
35Ga0066710_1000411926
36Ga0066710_1009494711
37Ga0066710_1010983372
38Ga0066710_1044420522
39Ga0105245_103736854
40Ga0066709_1020877402
41Ga0075423_125291001
42Ga0105241_110463162
43Ga0126305_106854702
44Ga0134125_130866842
45Ga0134128_130293891
46Ga0120191_100962291
47Ga0136621_100418210
48Ga0137382_108688411
49Ga0137381_102770222
50Ga0137376_101279342
51Ga0137377_103098352
52Ga0137371_108861261
53Ga0137371_110953471
54Ga0137385_112792731
55Ga0157289_103044531
56Ga0157310_101144931
57Ga0137407_116104542
58Ga0164300_105329351
59Ga0164298_100647431
60Ga0164301_101622694
61Ga0164301_108544402
62Ga0164307_104110692
63Ga0164305_111982242
64Ga0132258_112730611
65Ga0132258_140007241
66Ga0132255_1005442711
67Ga0132255_1031991342
68Ga0134074_11625112
69Ga0183260_101739734
70Ga0184605_104901501
71Ga0184605_104927391
72Ga0184619_104565371
73Ga0184624_101662452
74Ga0066667_118512052
75Ga0190269_104815322
76Ga0190270_101190581
77Ga0190270_102214942
78Ga0190270_133400661
79Ga0190274_107326491
80Ga0190271_119807061
81Ga0066669_119739611
82Ga0193697_11396931
83Ga0247790_102076611
84Ga0207693_109306562
85Ga0207679_118020652
86Ga0209027_10937732
87Ga0209027_11765341
88Ga0209155_11440832
89Ga0209474_102600362
90Ga0209701_102702383
91Ga0209579_101311272
92Ga0209283_108417702
93Ga0210366_103907043
94Ga0307282_106183051
95Ga0307296_100688041
96Ga0307312_104786221
97Ga0307289_104997601
98Ga0307308_103506802
99Ga0310907_103062791
100Ga0307410_111785651
101Ga0310892_102088241
102Ga0310895_102332421
103Ga0310889_107519732
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Mixed Signal Peptide: No Secondary Structure distribution: α-helix: 65.12%    β-sheet: 0.00%    Coil/Unstructured: 34.88%
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Variant

510152025303540455055MASQLKALRERADSQQVHADSQQERAEIQQERIDLAARELAEVSDRLQAAANALRESISequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
49.5%50.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Polar Desert Sand
Estuarine
Natural And Restored Wetlands
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Serpentine Soil
Grasslands Soil
Terrestrial
Surface Soil
Soil
Soil
Soil
Grasslands Soil
Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Arabidopsis Rhizosphere
Corn Rhizosphere
Populus Rhizosphere
Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
3.9%19.4%9.7%3.9%3.9%15.5%8.7%3.9%3.9%3.9%2.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_10462142013300000956SoilKEMAGQLETLRTRVDTEEQRADLQQERTDVQQERIDLAARELTEVSDRLQAAANALRESV
JGI10216J12902_11539411223300000956SoilSERADSQQRQADSQRARTEAQQERIDLAAHELADVSERLQAAANALRESI*
Ga0055469_1027142923300003999Natural And Restored WetlandsKAISERADSQQRRADSQQARAEAQQERIDLAARELADVSERLQAAANALRESI*
Ga0063454_10000480023300004081SoilMAKEINEVRERANSQQERANSQQERTDIQQERIDLAARELAEVSDRLQAAANALRESI*
Ga0062593_10197469923300004114SoilVEEMAAELKELRENAVAQQQRADNQHARSEIQQERIDLAARELAEVSARLQAAADALRESI*
Ga0062590_10188763213300004157SoilRTVENMAGQLKALRERADNERERADKQQERSEVQQERIDLAARELAEVSDRLQAAANALRESV*
Ga0062595_10039320023300004479SoilVEGLAAEVKALRENAEAQQQRADDQHARSEIQQERIDLAARELAEVSARLQAAADALRESI*
Ga0062595_10088504723300004479SoilMAAELKALRANAEAQQQRADNQHARSEIQQERIDLAARELAEVSARLQAAADALRESI*
Ga0066683_1039579623300005172SoilTRVVEDMAAQLKALRTRADSQQERSDIQQERIDLAARELAEVSERLQAAANALRESI*
Ga0066679_1025177713300005176SoilMAAQLKALKERADTQQERANSQQARAEMQQERIDLAARELAEVSDRLQAAANALRESI*
Ga0066678_1073479823300005181SoilMAAQLRALQNRADSQQARANSQQERAEIQQERIDLAARELVEVCDRLQAA
Ga0070714_10045112323300005435Agricultural SoilGRRARVIPKALQTRSDSQQERADSQRERAEMPQERIDLAARELADVSDRLQAAANALRESV*
Ga0070701_1044113323300005438Corn, Switchgrass And Miscanthus RhizosphereMASQLAAVSARADSQQERADTQHERTEIQQERIDLAARELTEVSDRLQAAANALRASV*
Ga0070705_10147143013300005440Corn, Switchgrass And Miscanthus RhizosphereMAELTQEVKEMAAQLAALRERADHQQEVTEVQNERAEIQQERIELAARELAEVSARIQAAANALRESI*
Ga0066687_1024563313300005454SoilTVAEMETQLRALRERADSQQERADLQRERTEVQQERIDLAARELAEVSDRLQAAARALRQSI*
Ga0066687_1031529733300005454SoilVRELYKRAENQQVRADQQRDRTEIQQERIDLAARELAEVSARLQAAADALRASI*
Ga0073909_1039873513300005526Surface SoilMATELKALRENAEAQQQRADNQHARSEIQQERIDLAARELAEVSARLQAAADALRESI*
Ga0070741_1031827033300005529Surface SoilVEEMAAQLKALRERVDSQSHVAELQQERAEIQQERIDLAARELAEVSQRLQAAADALRASL*
Ga0070741_1051909913300005529Surface SoilMEEMAAQLKALRERADSQNHVAELQQERAEIQQERIDLAARELAEVSERLQAAADALRASI*
Ga0070672_10108533713300005543Miscanthus RhizosphereMEVRLRAMSERADSQQRRVDTQHARGEAQQERIDLAARELADVSERLQAAANALRESI*
Ga0070696_10187664423300005546Corn, Switchgrass And Miscanthus RhizosphereMAELTQEVKEMAAQLAALRERADHQQEITEVQNERAEIQQERIELAARELAEVSARIQAAANALRESI*
Ga0066701_1069271823300005552SoilMASQLKALRERADSQQVHADSQQERAEIQQERIDLAARELAEVSDRLQAAANALRESI*
Ga0066708_1002895343300005576SoilMAAQLRALQNRADSQQRRAESQQERIDLAARELVEVCDRLQAASNALRELA*
Ga0066654_1007239723300005587SoilVEEMAAELKSLRDRADSQQVRANSQQERSEIQQERIDLAARELAEVTERLQAAANALRESV*
Ga0066706_1085080723300005598SoilVQGLAAEVKALSERANRQQELVEVQAERAEIQQERIELAARELAEVSDRLQSAASALRQSV*
Ga0068856_10099624613300005614Corn RhizosphereVESMAVQLKALGERADNERERADKQQERSEVQQERIDLAARELAEVSDRLQAAANALRESV*
Ga0066696_1027402623300006032SoilMAAQLRALQNRADSQQARANSQQERAEIQQERIDLAARELVEVCDRLQAASNALRELA*
Ga0066652_10025527533300006046SoilMAAELKSLRDRADSQQVRANSQQERSEIQQERIDLAARELAEVTERLQAAANALRES
Ga0066652_10041073323300006046SoilMAAQLRALQNRADSQQARANSQQERAEIQQERIDLAARELVEVSDRLQAASNALRELA*
Ga0066652_10109622013300006046SoilAAQLKALKERADTQQERANSQQARAEMQQERIDLAARELAEVSDRLQAAANALRESI*
Ga0075417_1056124323300006049Populus RhizosphereVAAMEVRLRAMSERADSQQRRVDTQHARGEAQQERIDLAARELADVSERLQAAANALRESI*
Ga0074051_1138995413300006572SoilPRAPQRADSQQRRADSQQEHTEIQQERIDLAARELAEVSDRLHAAANALRASI*
Ga0074049_1016642813300006580SoilAQLADLTRSVGQMASQLQALRDRADNQQERAEIQQERIDLAARELAEVSARLQSAANALRAQI*
Ga0075425_10069414823300006854Populus RhizosphereMAAELKALRANAEAERQRADNQHARSEIQQERIDLAARELAEVSARLQAAADALRESI*
Ga0066710_10004119263300009012Grasslands SoilVRERADSQQERANSQQERTDIQQERIDLAARELAEVSDRLQAAANALRESI
Ga0066710_10094947113300009012Grasslands SoilNSLIPSRGWRLGALQNRADSQQRRAESQQERIDLAARELAEVSDRLQPAANALRELA
Ga0066710_10109833723300009012Grasslands SoilMAAQLRALQNRADSQQARANSQQERAEIQQERIDLAARELVEVSDRLQAAANALRESI
Ga0066710_10444205223300009012Grasslands SoilAAQLKALKERADTQQERANSQQARAEMQQERIDLAARELAEVSDRLQAAANALRESI
Ga0105245_1037368543300009098Miscanthus RhizosphereLAAVSARADSQQERADTQHERTEIQQERIDLAARELTEVSDRLQAAANALRASV*
Ga0066709_10208774023300009137Grasslands SoilMASQLKTLSDRADSQQERSNSQQERTEIQQERIDLAAQELAAVIERLQAAADALQASI*
Ga0075423_1252910013300009162Populus RhizosphereTQQVEEMAHQLKAVSDRADSQQERADIQQERIDLAARELTEVSARLQAAAAALRETI*
Ga0105241_1104631623300009174Corn RhizosphereTRTVAAMEVRLRAMSERADSQQRRVDTQHARGEAQQERIDLAARELADVSERLQAAANALRESI*
Ga0126305_1068547023300010036Serpentine SoilSDRADNQQKRADVQQRRTEVQQERIDLAARELADVSERLQAAANALRESI*
Ga0134125_1308668423300010371Terrestrial SoilMAELTQEVKEMAAQLAALRERADHQQEVTEVQNERAEIQQERIELAARELAEVSARLQAAANALRESI*
Ga0134128_1302938913300010373Terrestrial SoilRERADSQQVRAYSQQERTVVQQERIDLAARELAEVSDRLQAAANALRESI*
Ga0120191_1009622913300012022TerrestrialVKVHVLERDPVHRALRERADSQQLRADREQERTDTQQERIDLAARELADVSDRLQAAANALRESI*
Ga0136621_1004182103300012092Polar Desert SandMAKDLKAMTERADRQQTRADSQQERAPVQQERIDLAAQELADVSDRLQAAANALRDSI*
Ga0137382_1086884113300012200Vadose Zone SoilMANEIKEVRDRADSQQERANSQQERTDIQQERIDLAARELAEVSDRLQAAANALRESI*
Ga0137381_1027702223300012207Vadose Zone SoilMAAQLKALKERADTQQERANSQQARAEIQQERIDLAARELAEVSDRLQAAANALRESI*
Ga0137376_1012793423300012208Vadose Zone SoilMAAQLRALQNRADSQKARANNQQERAEIQQERIDLAARELVEVSDRLQAASNALRELA*
Ga0137377_1030983523300012211Vadose Zone SoilVEGLAAELKALSERANRQQELVEVQAERAEIQQERIELAARELAEVSDRLQSAASALRESV*
Ga0137371_1088612613300012356Vadose Zone SoilEEMAAQLKALKERADTQQERANSQQARAEIQQERIDLAARELAEVSDRLQAAANALRESI
Ga0137371_1109534713300012356Vadose Zone SoilVEELAAEVKALSEHANRQQELVEVQAERAEIQQERIELAARELAEVSDRLQSGLSDFRCKRDCH*
Ga0137385_1127927313300012359Vadose Zone SoilVEGLAAEVKALSERANRQQELVEVQAERAEIQQERIELAARELAEVSDRLQSAASALRESV*
Ga0157289_1030445313300012903SoilTVAGMGRQLKAISERADSQQRRADTQHARAEAQQERIDLAARELADVSERLQAAANALRESI*
Ga0157310_1011449313300012916SoilMANQLRLLRERADSERERADKQQERSEIQQERIDLAARELAEVSDRLQAAANALRESI*
Ga0137407_1161045423300012930Vadose Zone SoilMAAQLKALKERADTQQDRANSQQARAEIQQERIDLAARELAEVSDRLQAAANALRE
Ga0164300_1053293513300012951SoilMAAQLTARQQRANDQQELVDVQAERAEIQQERIELAARELAEVSARLQAAANALRDSI*
Ga0164298_1006474313300012955SoilMAAQLTALQQRANDQQELVDVQAERAEIQQERIELAARELAEVSARLQAA
Ga0164301_1016226943300012960SoilMAAQLTALQQRANDQQELVDVQAERAEIQQERIELAARELAEVSARLQAAANALRDSI*
Ga0164301_1085444023300012960SoilVEEMAAELKTLRERADSQQKRTEFQQERTEIQQERIDLAARELAEVSARLQAAANALRESI*
Ga0164307_1041106923300012987SoilVEALAAELKSLKERADTQQTLATAQQERAETQQERIDLAARELAEVSDRLQAAANALRESV*
Ga0164305_1119822423300012989SoilMAAQLTALQQRANDQQELVDVQAERAEIQQERIELAARELAEV
Ga0132258_1127306113300015371Arabidopsis RhizosphereSSERADSEQKRADRQHERSDAQQERMDIAARELADVSERLQAAANALRESI*
Ga0132258_1400072413300015371Arabidopsis RhizosphereVEEMAAELKELREHAVAQQQRADNQHARSEIQQERIDLAARELAEVSARLQAAADALRESI*
Ga0132255_10054427113300015374Arabidopsis RhizosphereRLRAMSERADSQQRRVDTQHARGEAQQERIDLAARELADVSERLQAAANALRESI*
Ga0132255_10319913423300015374Arabidopsis RhizosphereESNERADSQQKRADRQHERSDAQQERMDIAARELADVSERLQAAANALRESI*
Ga0134074_116251123300017657Grasslands SoilMSAQLKALQNRADNQDRRADTDHERSEVQQERIDLAARELAQVSERLQAAANALREPV
Ga0183260_1017397343300017787Polar Desert SandMAKDLKAMTERADRQQTRADSQQERAPVQQERIDLAAQELADVSDRLQAAANALRDSI
Ga0184605_1049015013300018027Groundwater SedimentTVEEMAAQLTALQERANSQQELAEVQAERAEIQQERIELAARELAEVSARLQSAANALRESI
Ga0184605_1049273913300018027Groundwater SedimentKNQLAALGERADSQQANARVQRERSEVQQERIDLAARELAEVSDRLQAAANALRESI
Ga0184619_1045653713300018061Groundwater SedimentMASQLKALRERADSQQARADTQQERTETQQERIDLAARELAEVSGRLQAAAKALRQSI
Ga0184624_1016624523300018073Groundwater SedimentMAKDLNAMTERADRQPARADSQQDLVDTQQKRALVQQERIDLAARELADVSDRLQAAANA
Ga0066667_1185120523300018433Grasslands SoilMAAQLKALRTRADSPQERADTQQERIDLAARELAEVSSRLQAAANALRESI
Ga0190269_1048153223300018465SoilVEEMARQLAAVSERADSQQERADTQHERTEIQQERIDLAAQELTEVSDRLQAAANALRSS
Ga0190270_1011905813300018469SoilSDRADSQQQRADRQHERSEAQQERIDLAARELADVSERLQAAANALRESI
Ga0190270_1022149423300018469SoilVTSKRAESQQSRADAQQERSDAQQERIDIAAHELAGVSERLQSAATAPRINLTA
Ga0190270_1334006613300018469SoilALTRTVEEMATQLAAVSERADSQQERADSQHERTEIQQERIDLAARELTEVSDRLQAAANALRSSV
Ga0190274_1073264913300018476SoilLKTMSERADSQQRQADSQLARTEAQQERIDLAARELADVSERLQAAANALRESI
Ga0190271_1198070613300018481SoilRTVAAMESQLKGISERADSQQRRADTQHARAEAQQERIDLAARELADVSERLQAAANALRESI
Ga0066669_1197396113300018482Grasslands SoilRTVEGMASEIKEVRERADSQQERANSQQERTDIQQERIDLAARELAEVSDRLQAAANALRESI
Ga0193697_113969313300020005SoilGFVAEDQAGQVAELETVRSRADNAQDRADSQQERIDLAARELAEVSERIQAAANALRESL
Ga0247790_1020766113300022915SoilTRTVAAMEVRLRAMSERADSQQRRVDTQHARGEAQQERIDLAARELADVSERLQAAANALRESI
Ga0207693_1093065623300025915Corn, Switchgrass And Miscanthus RhizosphereTRTVEGMAAQLKALGERAESERQRADKQQERSEVQQERIDLAARELAEVSDRLQAAANALRESI
Ga0207679_1180206523300025945Corn RhizosphereMEVRLRAMSERADSQQRRVDTQHARGEAQQERIDLAARELADVSERLQAAANALRESI
Ga0209027_109377323300026300Grasslands SoilVEGMASEIKEVRERADSQQERANSQQERTDIQQERIDLAARELAEVSDRLQAAANALRES
Ga0209027_117653413300026300Grasslands SoilMADELRTLRERADSQQMLASTQHERAESQQERIDLAARELAEVTERLQAAANALRESV
Ga0209155_114408323300026316SoilERADSQQERANSQQERTDIQQERIDLAARELAEVSDRLQAAANALRESI
Ga0209474_1026003623300026550SoilMAAQLRALQNRADSQQARANSQQERAEIQQERIDLAARELVEVCDRLQAASNALRELA
Ga0209701_1027023833300027862Vadose Zone SoilKALRELADSQQVRADSRQERAEIQQERIDLAARELAEISDRLQAANALRESI
Ga0209579_1013112723300027869Surface SoilMKEMAAQLKALRDRADTQQHLAEAQQERAEIQQERIDLAARELAEVSERLQAAADALRAS
Ga0209283_1084177023300027875Vadose Zone SoilHRKALRELADSQQVRADSRQERAEIQQERIDLAARELAEISDRLQAAANALRESI
Ga0210366_1039070433300028420EstuarineEVEQMGRQLEALRERTDSQQQRADTQHERIDLAARELAEVSARLQAAAAALRESI
Ga0307282_1061830513300028784SoilQEMSSQLKGLRESADSARERADTQQERIDLAARELTEVSDRLQAAANALRESI
Ga0307296_1006880413300028819SoilESMAAQLKALGERADNERQRADKQQERSEVQQERIDLAARELAEVSDRLQAAANALRESL
Ga0307312_1047862213300028828SoilAELTHTVEEMAAELKALRERADSQQERANRQQDRAEIQQERIDLAARELAEVSDRLQAAANALREAV
Ga0307289_1049976013300028875SoilKLLRESAASEQERADEQQERSDVQQERIDLAARELAEVSDRLQAAANALRESV
Ga0307308_1035068023300028884SoilMAAQLTALQERANSQQELAEVQAERAEIQQERIELAARELAEVSARLQSAANALRESI
Ga0310907_1030627913300031847SoilMERQLKAISDQADSQQRRADNQRARVEAQQERIDLAARELADVSERLQAGANALRESI
Ga0307410_1117856513300031852RhizosphereMARQLAAVSERADNQQERADTQHERTEIQQERIDLAARELAEVSDRLQAAANALRSSV
Ga0310892_1020882413300031858SoilMERQLKAISDQADSQQRRADNQRARVEAQQERIDLAARELADVSERLQAGANALRES
Ga0310895_1023324213300032122SoilMAGMERQLKAISDQADSQQRRADNQRARVEAQQERIDLAARELADVSERLQAGANALRES
Ga0310889_1075197323300032179SoilLRESNERAESQQKRADRQHERSDAQQERMDIAARELADVSERLQAAANALRESI


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