Metagenome / Metatranscriptome Family F099237

Basic Information
Family ID	F099237
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	62 residues
Representative Sequence	MDWLLTREAVIALAVLGAFASTAASVLQVRGRISAARARQLNFAGYVLMGISMALFIVIGFRR
Number of Associated Samples	92
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	47.06 %
% of genes near scaffold ends (potentially truncated)	39.81 %
% of genes from short scaffolds (< 2000 bps)	83.50 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (63.107 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.417 % of family members)
Environment Ontology (ENVO)	Unclassified (31.068 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.718 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 1JGI11643J12802_120291135 2JGI10216J12902_1258408851 3soilL2_1001703310 4soilL2_101117762 5JGI25407J50210_101554541 6Ga0062589_1006757982 7Ga0062589_1009296962 8Ga0062589_1014297532 9Ga0062590_1020628931 10Ga0063356_1006295423 11Ga0063356_1037922991 12Ga0062592_1013810991 13Ga0062592_1017195192 14Ga0062591_1006060362 15Ga0066819_10282061 16Ga0066823_100808612 17Ga0066671_103690842 18Ga0068868_1022584081 19Ga0070692_101485122 20Ga0070671_1008465292 21Ga0070705_1012446633 22Ga0070700_1003325532 23Ga0070700_1011837632 24Ga0070694_1011971941 25Ga0070699_1009992591 26Ga0073909_101031542 27Ga0070672_1004908022 28Ga0070686_1004693301 29Ga0070686_1008819061 30Ga0070693_1011507052 31Ga0066699_103986852 32Ga0068854_1001052391 33Ga0070702_1017364831 34Ga0066905_1007630522 35Ga0068870_103950042 36Ga0068863_1026456611 37Ga0068858_1006574041 38Ga0081538_101940972 39Ga0066652_1005817632 40Ga0074064_116420002 41Ga0066658_101302403 42Ga0079217_116328441 43Ga0079218_117563321 44Ga0105095_100975751 45Ga0105095_103118802 46Ga0105245_1000046435 47Ga0105249_100512741 48Ga0136449_1000499389 49Ga0134122_117973711 50Ga0134121_104941712 51Ga0105246_110627952 52Ga0157291_100612151 53Ga0157296_100076803 54Ga0157308_100174382 55Ga0157310_102956921 56Ga0164300_106301732 57Ga0164309_103156562 58Ga0164304_101480973 59Ga0157376_107572311 60Ga0173480_101389751 61Ga0184640_103321951 62Ga0190265_100954264 63Ga0190270_105578942 64Ga0190274_118895531 65Ga0173482_102156942 66Ga0213898_1027731 67Ga0247748_10449801 68Ga0247686_10006708 69Ga0247686_10011425 70Ga0247690_10025103 71Ga0209642_102023052 72Ga0207645_111262582 73Ga0207662_107955921 74Ga0207649_109192162 75Ga0207681_101163111 76Ga0207681_110002471 77Ga0207650_104802362 78Ga0207669_104802082 79Ga0207665_115559722 80Ga0207640_101468801 81Ga0207703_104421841 82Ga0209152_101507231 83Ga0209969_10051342 84Ga0209999_10836191 85Ga0209286_11398202 86Ga0209811_100195173 87Ga0209517_100393162 88Ga0307499_1000124310 89Ga0299913_101968244 90Ga0307505_101156582 91Ga0307408_1002814462 92Ga0310813_100627326 93Ga0307405_104371601 94Ga0308174_102423372 95Ga0310897_106479832 96Ga0315910_100414924 97Ga0315910_102128062 98Ga0315912_108093551 99Ga0311301_100549279 100Ga0310889_107252862 101Ga0310810_102336284 102Ga0247829_113738902 103Ga0372943_0081091_795_992
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 1JGI11643J12802_120291135 2JGI10216J12902_1258408851 3soilL2_1001703310 4soilL2_101117762 5JGI25407J50210_101554541 6Ga0062589_1006757982 7Ga0062589_1009296962 8Ga0062590_1020628931 9Ga0062592_1013810991 10Ga0062591_1006060362 11Ga0070700_1003325532 12Ga0070700_1011837632 13Ga0070699_1009992591 14Ga0070686_1004693301 15Ga0066699_103986852 16Ga0066905_1007630522 17Ga0068863_1026456611 18Ga0105095_103118802 19Ga0136449_1000499389 20Ga0307505_101156582 21Ga0308174_102423372 22Ga0372943_0081091_795_992
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1Ga0134121_104941712 2soilL2_1001703310 3soilL2_101117762 4Ga0062589_1009296962 5Ga0062589_1014297532 6Ga0063356_1006295423 7Ga0063356_1037922991 8Ga0062592_1013810991 9Ga0062592_1017195192 10Ga0066823_100808612 11Ga0070700_1003325532 12Ga0070699_1009992591 13Ga0070686_1004693301 14Ga0066699_103986852 15Ga0066905_1007630522 16Ga0081538_101940972 17Ga0105095_100975751 18Ga0136449_1000499389 19Ga0134122_117973711 20Ga0105246_110627952 21Ga0164300_106301732 22Ga0190270_105578942 23Ga0190274_118895531 24Ga0307505_101156582 25Ga0308174_102423372 26Ga0315910_102128062 27Ga0372943_0081091_795_992
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.04% β-sheet: 0.00% Coil/Unstructured: 43.96%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00005	ABC_tran	33.98
PF01925	TauE	10.68
PF13419	HAD_2	4.85
PF00763	THF_DHG_CYH	4.85
PF02882	THF_DHG_CYH_C	4.85
PF01571	GCV_T	4.85
PF08669	GCV_T_C	3.88
PF00528	BPD_transp_1	2.91
PF00072	Response_reg	0.97
PF06334	Orthopox_A47	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	10.68
COG0190	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	Coenzyme transport and metabolism [H]	9.71
COG0686	Alanine dehydrogenase (includes sporulation protein SpoVN)	Amino acid transport and metabolism [E]	4.85
COG1942	Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.97
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.97

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.11 %
Unclassified	root	N/A	36.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.11 %
Unclassified	root	N/A	36.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.11 %
Unclassified	root	N/A	36.89 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	57.28 %
Unclassified	root	N/A	36.89 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.91 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	43.69 %
Unclassified	root	N/A	36.89 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples	13.59 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.97 %
Unclassified	root	N/A	36.89 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	6.80 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	5.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.97 %
Unclassified	root	N/A	36.89 %
uncultured beta proteobacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium	13.59 %

Scaffold	Taxonomy	Length	IMG/M Link
3300000890\|JGI11643J12802_12029113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1415	Open in IMG/M
3300000956\|JGI10216J12902_125840885	Not Available	524	Open in IMG/M
3300003319\|soilL2_10017033	All Organisms → cellular organisms → Bacteria → Proteobacteria	10484	Open in IMG/M
3300003319\|soilL2_10111776	Not Available	1006	Open in IMG/M
3300003373\|JGI25407J50210_10155454	Not Available	563	Open in IMG/M
3300004156\|Ga0062589_100675798	Not Available	912	Open in IMG/M
3300004156\|Ga0062589_100929696	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300004156\|Ga0062589_101429753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	676	Open in IMG/M
3300004157\|Ga0062590_102062893	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300004463\|Ga0063356_100629542	All Organisms → cellular organisms → Bacteria → Proteobacteria	1458	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.79%
Host-Associated	Host-Associated	26.21%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	3.88%
Plants	Host-Associated → Plants	26.21%
Terrestrial	Environmental → Terrestrial	69.90%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	2.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.59%
Roots	Host-Associated → Plants → Roots	1.94%
Sediment	Environmental → Aquatic → Sediment	0.97%
Soil	Environmental → Terrestrial → Soil	69.90%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.68%
Loam	Environmental → Terrestrial → Soil → Loam	13.59%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.97%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.97%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.97%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.94%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.97%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	1.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.97%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005148	Soil and rhizosphere microbial communities from Laval, Canada - mgLMA	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J12802_120291135	3300000890	Soil	LDLLLTREAVITLAVLGAVFSSAASMLQVRGTIGAPRARQLNIAGYVCMGISMFL
JGI10216J12902_1258408851	3300000956	Soil	LTREVVITLAVLGAIASTAASVLQVRGRIDAARARQLNATGYALMGVSMALFIIVGFRT*
soilL2_1001703310	3300003319	Sugarcane Root And Bulk Soil	LDWLFTRAAVITLAVLGALASTAASVLQVRGVISAERARQLNIAGYVLMGISMALFIVAGFRR*
soilL2_101117762	3300003319	Sugarcane Root And Bulk Soil	VDWLLTREVVISLAVLGAIFSTAASILQVRGTIGAPRARQLNYAGYACMGVSMLLFIVVGYRT*
JGI25407J50210_101554541	3300003373	Tabebuia Heterophylla Rhizosphere	VITLAVLGAVFSTASSVLQVRGRISAFRARQLNVVGYALMGVSMLLFIVVGYRGP*
Ga0062589_1006757982	3300004156	Soil	VDWLLTREAVITLAMLGAAASTSASYLQVRGKISAARASRLNLLGYALMGASMALFIAAGFRS*
Ga0062589_1009296962	3300004156	Soil	VDWLLTRETVITLAVLAAILSVAASVLQTRGRIDAQRARQLNAAGYGLMGVSMLLFIIIGYRS*
Ga0062589_1014297532	3300004156	Soil	VDWLLTREVVITLAVLGAIASTAASVLQVRGRIDAARARQLNATGYALMGVSMALFIIVGFRS*
Ga0062590_1020628931	3300004157	Soil	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNFVGYGLMGISMLLFIIVGFRSH*
Ga0063356_1006295423	3300004463	Arabidopsis Thaliana Rhizosphere	VDWLLTREVVISLAVLGAVFSTASSVLQVRGRIGAPRARQLNVAGYVCMGISMLLFIVVGYRGPG*
Ga0063356_1037922991	3300004463	Arabidopsis Thaliana Rhizosphere	LDLLLTREAVITLAVLGAVFSTAASILQVRGTIGAARARQLNVAGYVFMGISMLLFIVVGYRS*
Ga0062592_1013810991	3300004480	Soil	LAVLGAAFSTSASYLQVRGKIGATRASQLNIAGYACMGVSMLLFIIVGLRGTA*
Ga0062592_1017195192	3300004480	Soil	LDLLLTREAVITLAVLGAVFSSAASMLQVRGTIGAPRARQLNIAGYVCMGISMFLFIVVGYRGPAG*
Ga0062591_1006060362	3300004643	Soil	MDWLLTREAVIALAVLGAIASTAASALRVRGTLSALRARQLNLLGYALMGISMALFIVAGYRASS*
Ga0066819_10282061	3300005148	Soil	MDWLLTREAVIALAVLGAIASTAASALRVRGTLSALRARQLNLLGYVLMGISMALFIGAGYRAPA*
Ga0066823_100808612	3300005163	Soil	MDWLLTREAVIALAVLGALASTAASALHVRGMLSALRARQLNLLGYVLMGISMALFIVAGYRAPA*
Ga0066671_103690842	3300005184	Soil	VDWLLTREAVIALAVLGAIASTAASVLQVRGRIGAARARQLNAAGYVLMAISMALFITIGFRR*
Ga0068868_1022584081	3300005338	Miscanthus Rhizosphere	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNLVGYGLMGISMLLFIIVG
Ga0070692_101485122	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPAHARQLNLVGYSLMGISMLLFITVGFRSH*
Ga0070671_1008465292	3300005355	Switchgrass Rhizosphere	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNHVGYGLMGISMLLFIIVGFRSH*
Ga0070705_1012446633	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	LAMLGAAASTSASYLQVRGKISAARASRLNLLGYAFMGASMALFIAAGFRT*
Ga0070700_1003325532	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VDWLLTREVVITLAVLGAAASTTASYLQISKRISAARARQLNWLGYAFMGVS
Ga0070700_1011837632	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	LQARQQNLAVDWLLTREVVISLAVLGAVFSTASSVLQVRGRIGAPRARQLNVAGYVCMGISMLLFIVVGYRGPG*
Ga0070694_1011971941	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VITLAVLAAILSVAASVLQTRGRIDAQRARQLNAAGYGLMGVSMLLFIIIGYRS*
Ga0070699_1009992591	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VDWLLTREAVITLAVLGAIASTAASVLQVRGRLSPARASQLNVAGYVLMGLSMALFIIAGYRSPAG*
Ga0073909_101031542	3300005526	Surface Soil	MDWLLTREAVIALAVLGAIASIAASALRVRGTLSALHARQLNLLGYLLMGVSMALFIVAGYRAPN*
Ga0070672_1004908022	3300005543	Miscanthus Rhizosphere	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNLVGYSLMGISMLLFITVGFRSH*
Ga0070686_1004693301	3300005544	Switchgrass Rhizosphere	MDALLTREAVVALAVLGALASTAASILQASKRIGASRASQLNWLGYAFMGVSMALFIVAGFRS*
Ga0070686_1008819061	3300005544	Switchgrass Rhizosphere	VDWLLTREAMITLAVLGAAASTSASYLQVRGKISAARASRLNLLGYALMGASMALFIAAGFRS*
Ga0070693_1011507052	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	VDWLLTREAMITLAVLGAAASTSASYLQVRGKISAARASRLNLLGYAFMGASMALFIAAGFRS*
Ga0066699_103986852	3300005561	Soil	LPARSQAIAGMDWILTREAVITLAVLGAVASVAASVQQLRGRVDAPRARQFNLTGYALMAASMALFIVIGFRT*
Ga0068854_1001052391	3300005578	Corn Rhizosphere	VVVGLAVLGALPSVAASVLEARGGILPARARQLNFVGYSLMGISMLLFIIVGFRAQ*
Ga0070702_1017364831	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNLVGYSLMGISMLL
Ga0066905_1007630522	3300005713	Tropical Forest Soil	VDWLLTREAVITLAVLGAVFSTAASALQVRGKISAARAGQLNIVGYAFMGVSMALFIVIGFRGPVS*
Ga0068870_103950042	3300005840	Miscanthus Rhizosphere	WLLTREAVIALAVLGAIASTAASALRVRGTLSALRARQLNLLGYALMGISMALFIVAGYRASS*
Ga0068863_1026456611	3300005841	Switchgrass Rhizosphere	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNFVGYG
Ga0068858_1006574041	3300005842	Switchgrass Rhizosphere	VVGLAVLGALPSVAASVLEARGGILPARARQLNFVGYSLMGISMLLFIIVGFRAQ*
Ga0081538_101940972	3300005981	Tabebuia Heterophylla Rhizosphere	MDLLLTREAVITLAVLGAVFSTASSVLQVRGRISAFRARQLNVVGYALMGVSMLLFIVVGYRGP*
Ga0066652_1005817632	3300006046	Soil	VDWLLTRGAVITLAVLGALASTAASMLQVRGLISAERARQLNFAGYVLMGISMALFIVAGFRR*
Ga0074064_116420002	3300006603	Soil	MDWLLTREAVIALAVLGAIASSTASALRVRGTLSALRARQLNLLGYVLMGISMALFIVAGYRAQA*
Ga0066658_101302403	3300006794	Soil	MDWILTREAVITLAVLGAVASVAASVQQLRGRVDAPRARQFNLTGYALMAASMALFIVIGFRT*
Ga0079217_116328441	3300006876	Agricultural Soil	LDWLLTREVVITLAVLAAIPSVAASLLQVRGKISAARARQLNFAGYVLMGISMALFIVIGFRGPAAGL*
Ga0079218_117563321	3300007004	Agricultural Soil	VDWLVTRETVITLAVLGAVASTAASALQVRGKISAARARQLNIVGYVLMGLSMLLFIIAVYRS*
Ga0105095_100975751	3300009053	Freshwater Sediment	VDWLLTREAVIGLAVLGAVFSVAASALQVRGAIGAARARQINIAGYACMGVSMLLFIIVGYRS*
Ga0105095_103118802	3300009053	Freshwater Sediment	AVIGLAVLGALFSVAASALQVRGAIGAARARQINIAGYACMGVSMLLFIIVGYRS*
Ga0105245_1000046435	3300009098	Miscanthus Rhizosphere	MDWLLTREAVIALAVLGAITSTAASALRVRGTLSALRARQLNLLGYALMGISMALFIVAGYRASS*
Ga0105249_100512741	3300009553	Switchgrass Rhizosphere	VDWLLTREVVISLAVLGAVFSTASSVLQVRGRIGAPRARQLNVAGYVCMGISMLLFIVV
Ga0136449_1000499389	3300010379	Peatlands Soil	MDWIFMRETVIVLAVLGAIPSIAASMLHMRGGISASRARHFNLTGYALMAVSMALFIIAGFRAP*
Ga0134122_117973711	3300010400	Terrestrial Soil	VDWLLTREAMITLAVLGAAASTSASYLQVRGKISAARASRLNLLGYAFMGASMALFIAAGFRT*
Ga0134121_104941712	3300010401	Terrestrial Soil	MDWLLTREAVIALAVLGAFASTAASVLQVRGRISAARARQLNFAGYVLMGISMALFIVIGFRR*
Ga0105246_110627952	3300011119	Miscanthus Rhizosphere	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNFVGYGLMGISMLLFIIVGFRAQ*
Ga0157291_100612151	3300012902	Soil	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNLVGYGLMGISM
Ga0157296_100076803	3300012905	Soil	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNFVGYGLMGISMLLFIIVGFWAQ*
Ga0157308_100174382	3300012910	Soil	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNHVGYGLMGISMLLFIIVGFRAQ*
Ga0157310_102956921	3300012916	Soil	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNLVGYSLMGISMLLF
Ga0164300_106301732	3300012951	Soil	EAREQDLSARDWLLTREAVIALAVLGAIASIAASALRVRGTLSALHARQLNLLGYLLMGVSMALFIVAGYRAPN*
Ga0164309_103156562	3300012984	Soil	MDWLLTREAVIALAVLGAIASIAASALRVRGTLSALHARQLNLLGYALMGISMALFIVAGYRASS*
Ga0164304_101480973	3300012986	Soil	RLLEAREQDLSAMDWLLTREAVIALAVLGAIASIAASALRVRGTLSALHARQLNLLGYLLMGVSMALFIVAGYRAPN*
Ga0157376_107572311	3300014969	Miscanthus Rhizosphere	MEWLLTREVVVGLAVLGALPSVAASVLEARGGILPARARQLNFVGYSLMGISMLL
Ga0173480_101389751	3300015200	Soil	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNLVGYG
Ga0184640_103321951	3300018074	Groundwater Sediment	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNLVGYSLMGISMLLFITVGFRSH
Ga0190265_100954264	3300018422	Soil	VDWLLSREVVISLAVLGAVLSTASSVLQVRGKIGAPRARQLNVAGYVCMGISMLLFIIVGYRS
Ga0190270_105578942	3300018469	Soil	LDWLLTREVVITLAVLAAIPSVAASLLQVRGKISAARARQLNFAGYVLMGISMALFIVIGFRGPAAGL
Ga0190274_118895531	3300018476	Soil	VDWLVTRETVITLAVLGAVASTAASALQVRGKISAARARQLNIAGYAFMGVSMVLFIIAGYRS
Ga0173482_102156942	3300019361	Soil	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNHVGYGLMGISMLLFIIVGFRSH
Ga0213898_1027731	3300021260	Soil	LDWLLTREVVITLAVLAAIPSVAASLLQVRGKISAARARQLNFAGYVLMGISMAL
Ga0247748_10449801	3300023168	Soil	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNLVGYSLM
Ga0247686_10006708	3300024177	Soil	IALAVLGAIASTAASALRVRGTLSALRARQLNLLGYALMGISMALFIVAGYRASS
Ga0247686_10011425	3300024177	Soil	MDWLLTREAVIALAVLGAITSTAASALRVRGTLSALRARQLNLLGYALMGISMALFIVAG
Ga0247690_10025103	3300024287	Soil	MDWLLTREAVIALAVLGAITSTAASALRVRGTLSALRARQLNLLGYALMGISMALFIVAGYRASS
Ga0209642_102023052	3300025167	Soil	LDWLLTREVVITLAVLAAIPSVAASVLQVRGKIGAARARQLNLVGYVLMGVSMALFIVIGFRGPAAAV
Ga0207645_111262582	3300025907	Miscanthus Rhizosphere	VDWLLTREVVISLAVLGAVFSTASSVLQVRGRIGAPRARQLNVAGYVCMGISMLLFIVVGYRGPG
Ga0207662_107955921	3300025918	Switchgrass Rhizosphere	MDWLLTREAVIALAVLGAFASTAASVLQVRGRISAARARQLNFAGYVLMGISMALFIVIGFRR
Ga0207649_109192162	3300025920	Corn Rhizosphere	MEWLLTREVVVGLAVLGALPSAAASVLEARGGISPARAKQLILVGYGLMGISMLLFIIVGFRAQ
Ga0207681_101163111	3300025923	Switchgrass Rhizosphere	LTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNLVGYGLMGISMLLFIIVGFRSH
Ga0207681_110002471	3300025923	Switchgrass Rhizosphere	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNLVGYSLMGISML
Ga0207650_104802362	3300025925	Switchgrass Rhizosphere	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNFVGYGLMGISMLLFIIVGFRSH
Ga0207669_104802082	3300025937	Miscanthus Rhizosphere	MEWLLTREVVVGLAVLGALPSVAASVLEARGGILPARARQLNFVGYSLMGI
Ga0207665_115559722	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	WLLTREAVIALAVLGAIASTAASALRVRGTLSALRARQLNLLGYALMGISMALFIVAGYRASS
Ga0207640_101468801	3300025981	Corn Rhizosphere	MEWLLTREVVVGLAVLGALPSVAASVLEARGGILPARARQLNFVGYSLMGISMLLFIIVG
Ga0207703_104421841	3300026035	Switchgrass Rhizosphere	VIALAVLGAITSTAASALRVRGTLSALRARQLNLLGYALMGISMALFIVAGYRASS
Ga0209152_101507231	3300026325	Soil	MDWILTREAVITLAVLGAVASVAASVQQLRGRVDAPRARQFNLTGYALMAASMALFIVIG
Ga0209969_10051342	3300027360	Arabidopsis Thaliana Rhizosphere	LDLLLTREAVITLAVLGAVFSSAASMLQVRGTIGAPRARQLNIAGYVCMGISMFLFIVVGYRGPAG
Ga0209999_10836191	3300027543	Arabidopsis Thaliana Rhizosphere	LDLLLTREAVITLAVLGAVFSSAASMLQVRGTIGAPRARQLNIAGYVCMGISMF
Ga0209286_11398202	3300027713	Freshwater Sediment	VDWFLTREAVIGLAVLGALFSVAASALQVRGAIGAARARQINIAGYACMGVSMLLFIIVGYRS
Ga0209811_100195173	3300027821	Surface Soil	MDWLLTREAVIALAVLGAIASIAASALRVRGTLSALHARQLNLLGYLLMGVSMALFIVAGYRAPN
Ga0209517_100393162	3300027854	Peatlands Soil	MDWIFMRETVIVLAVLGAIPSIAASMLHMRGGISASRARHFNLTGYALMAVSMALFIIAGFRAP
Ga0307499_1000124310	3300031184	Soil	MDWLLTREAVIALAVLGAIASSAASALHVRGMLSALRARQLNLLGYALMGISMALFIVAGYRAPT
Ga0299913_101968244	3300031229	Soil	VDWLLTREAVIGLAVLGALFSVAASALQVRGAIGAARARQINIAGYACMGVSML
Ga0307505_101156582	3300031455	Soil	MELLLDRPVVIGLAVAGAVFSTAASLLQARGRIGASRARQLNGAGYALMAVSMLLFISVGFRT
Ga0307408_1002814462	3300031548	Rhizosphere	VDWLLTREVVISLAVLGAVFSTASSVLQVRGKISALRARQLNVAGYVCMGISMLLFIVVGYRGPG
Ga0310813_100627326	3300031716	Soil	MDALLTREAVVALAVLGALASTAASILQASKRIGAGRASQLNWLGYAFMGVSMALFIVAGFRS
Ga0307405_104371601	3300031731	Rhizosphere	LAVDWLLTREVVISLAVLGAVFSTASSVLQVRGKISALRARQLNVAGYVCMGISMLLFIVVGYRGPG
Ga0308174_102423372	3300031939	Soil	MPEWLIAKEVVVGLAILGALPSTVASVLQARGNISAARARQLNLLGYGLMGLSMALFIVAGFQPR
Ga0310897_106479832	3300032003	Soil	MEWLLTREVVVGLAVLGALPSVAASVLAARGGITPARARQLNHVGYGLMGISMLLFIIVGFRSH
Ga0315910_100414924	3300032144	Soil	VDWLLTREVVISLAVLGAVFSTASSVLQVRGKISALRARQLNVAGYVCMGISMFLFIVVGYRS
Ga0315910_102128062	3300032144	Soil	VDLLLTREAVITLAVLGAVFSTASSVLQVRGKISALRARQLNVTGYVCMGISMFLFIVVGYRS
Ga0315912_108093551	3300032157	Soil	VDWLLTREVVISLAVLGAVFSTASSVLQVRGKISALRARQLNVAGYACMGISMLLFIIVGYRS
Ga0311301_100549279	3300032160	Peatlands Soil	MRETVIVLAVLGAIPSIAASMLHMRGGISASRARHFNLTGYALMAVSMALFIIAGFRAP
Ga0310889_107252862	3300032179	Soil	MEWLLTREVVVGLAVLGALPSVAASVLAARGGISPARARQLNLVGYSLMGI
Ga0310810_102336284	3300033412	Soil	VDWLLTREAVITLAMLGAAASTSASYLQVRGKISAARASRLNLLGYALMGASMALFIAAGFRS
Ga0247829_113738902	3300033550	Soil	LTREAVIALAVLGAIASIAASALRVRGTLSALHARQLNLLGYLLMGVSMALFIVAGYRAP
Ga0372943_0081091_795_992	3300034268	Soil	MIELMVSREVVVGLAVLGALPSVFASTLQMRGYISAARARHLNFIGYGLMGLSMALFIVAGFRAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099237

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences