NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099165

Metagenome / Metatranscriptome Family F099165

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099165
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 43 residues
Representative Sequence MGSWTVKNQQLRKTELASETAEINHTPLCEELGLDAKHGQRLN
Number of Associated Samples 70
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 16.50 %
% of genes near scaffold ends (potentially truncated) 38.83 %
% of genes from short scaffolds (< 2000 bps) 85.44 %
Associated GOLD sequencing projects 66
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (58.252 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(26.214 % of family members)
Environment Ontology (ENVO) Unclassified
(30.097 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(48.544 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.
1FwDRAFT_102330442
2Ga0068877_106861062
3Ga0068872_100882182
4Ga0068872_106794052
5Ga0068885_11549682
6Ga0075470_100539923
7Ga0075470_101435782
8Ga0075470_101864961
9Ga0075470_101900742
10Ga0075470_102232801
11Ga0075471_103176172
12Ga0075471_106127801
13Ga0075459_10167473
14Ga0075473_102747611
15Ga0075473_103712902
16Ga0075473_104072902
17Ga0075472_104353502
18Ga0075472_104908132
19Ga0075472_105157992
20Ga0102532_10423166
21Ga0102978_10583473
22Ga0103274_11323607
23Ga0103959_12184272
24Ga0075458_100127905
25Ga0075458_101066872
26Ga0102877_12061832
27Ga0102869_11592172
28Ga0108970_107072801
29Ga0114340_10423216
30Ga0114341_101939452
31Ga0114341_102158302
32Ga0114341_103874782
33Ga0114341_105107411
34Ga0114341_105139002
35Ga0114341_105169251
36Ga0114344_10159023
37Ga0114344_12293421
38Ga0114347_10209708
39Ga0114337_10976715
40Ga0114337_11870212
41Ga0104242_10610652
42Ga0129333_101527844
43Ga0129333_103213633
44Ga0129333_108709322
45Ga0129333_114914881
46Ga0129336_105948262
47Ga0129336_107443702
48Ga0119951_11162862
49Ga0119955_11087482
50Ga0129337_13868113
51Ga0129338_10042932
52Ga0119946_10049633
53Ga0208084_10011668
54Ga0207935_100051513
55Ga0208360_10375432
56Ga0214917_101067112
57Ga0214917_101794813
58Ga0255147_10538302
59Ga0255148_10604782
60Ga0255141_10319462
61Ga0256330_11394411
62Ga0255203_10504842
63Ga0255189_10183501
64Ga0255194_10459472
65Ga0255152_10487321
66Ga0255144_10215963
67Ga0255144_10619541
68Ga0256339_10199841
69Ga0255271_10622362
70Ga0256340_11236771
71Ga0256340_11463532
72Ga0208546_10429713
73Ga0208546_10862952
74Ga0208546_11236532
75Ga0208147_10219192
76Ga0208147_10486911
77Ga0208147_11045012
78Ga0208784_10385874
79Ga0208784_10493352
80Ga0208005_10154052
81Ga0255155_10165732
82Ga0255156_10048723
83Ga0255188_10293441
84Ga0255073_10544392
85Ga0209358_102685373
86Ga0209990_100380205
87Ga0255200_10300312
88Ga0255192_10267231
89Ga0255190_10316331
90Ga0255201_10158921
91Ga0119945_10010134
92Ga0315907_106084991
93Ga0315900_107459142
94Ga0315900_110841182
95Ga0315904_114002192
96Ga0315904_114344761
97Ga0315906_110083281
98Ga0315905_106229081
99Ga0315905_116227792
100Ga0315902_110470322
101Ga0315903_111140142
102Ga0334996_0074819_363_479
103Ga0335066_0396728_641_754
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 41.86%    β-sheet: 0.00%    Coil/Unstructured: 58.14%
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510152025303540MGSWTVKNQQLRKTELASETAEINHTPLCEELGLDAKHGQRLNSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
41.7%58.3%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater
Freshwater
Freshwater Lake
Freshwater
Freshwater, Plankton
Freshwater Lake
Freshwater
Freshwater And Marine
Aquatic
Freshwater
Freshwater
Aqueous
Freshwater To Marine Saline Gradient
Estuarine
Estuary
5.8%3.9%11.7%3.9%2.9%9.7%21.4%26.2%5.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FwDRAFT_1023304423300000882Freshwater And MarineLDIFLNQQLRKTELTSETAEINHTPLCEELGLDAEHGHRLN*
Ga0068877_1068610623300005525Freshwater LakeLSSWIFLNQQLRKTELTSETAEINHASLCEELGLDAEHGKR
Ga0068872_1008821823300005528Freshwater LakeMVEDQQLRTTELTSETAEINYTPLCEELGLDTKHGPRLS*
Ga0068872_1067940523300005528Freshwater LakeLSSWIFLNQQLRKTELTSETAEINHASLCEELGLDAEHG
Ga0068885_115496823300005565Freshwater LakeLGSWILLNQQLRKTELTSETAEINHTPLCEELGLDAEHGQRLN*
Ga0075470_1005399233300006030AqueousLGSWIFLNQQLRKTELTSETAEINHTPLCEELGLDAEHG*
Ga0075470_1014357823300006030AqueousMGSWTVKNQQLRKTELASETAEINHAPLCEEPGLNAKHGQRLN*
Ga0075470_1018649613300006030AqueousMGSSIVKNQQLRKTELASKAAEINHTPLCEELGLDAKHEQRLN*
Ga0075470_1019007423300006030AqueousGSWTVKNQQLRKTELASETAEINHAPLCEELGLDAKHGQRLN*
Ga0075470_1022328013300006030AqueousKSLMGSWTVKNQQLRKTELASETAEINHTPLCEELGLDAKHGERLN*
Ga0075471_1031761723300006641AqueousMVEDQQLRTTELTSETAEINYTPLCEVLGLDTKHGPRLS*
Ga0075471_1061278013300006641AqueousKNQQLRKTELASKAAEINHTPLCEELGLDAKHEQRLN*
Ga0075459_101674733300006863AqueousLGSWIFLNQQLRKTELTSETAEINHTPLCEELGLDAEHGQRLN*
Ga0075473_1027476113300006875AqueousSVALNFKTLVIDIYFLLSKFLMGSWTVKNQQLRKTELASKAAEINHTPLCEELGLDAKHEQRLN*
Ga0075473_1037129023300006875AqueousSVALNFKTLVIDIYFLLSKFLMGSWTVKNQQLRKTELASKTAEINHAPLCEELGLNAKHGQRLN*
Ga0075473_1040729023300006875AqueousMGSWTVKNQQLRKTELASETAEINHAPLCEELGLDAKHGQRLN*
Ga0075472_1043535023300006917AqueousLGSWIFLNQQLRKTELTSETAEINHAPLCEELGLNAEHGHRLN*
Ga0075472_1049081323300006917AqueousLDSKNQQLRKTELASEAAEINHAPLCEELGLDAKHGQRLN*
Ga0075472_1051579923300006917AqueousMGSWTVKNQQLRKTELASETAEINHTPLCEELGLDAKHEQRLN*
Ga0102532_104231663300007094Freshwater LakeLGSWIFLNQQLRQTELTSETAEINHTPLCEELGLDAEHGHRLN*
Ga0102978_105834733300007177Freshwater LakeLGSWIFLNQQLRKTELTSETAEINHAPLCEELGLDAEHGHRLN*
Ga0103274_113236073300007202Freshwater LakeLGSWIFLNQQLRKTELTSETAEINHAPLCEELGLDAEHGQRLN*
Ga0103959_121842723300007214Freshwater LakeLGSWIFLNQQLRQTELTSETAEINHAPLCEELGLDAEHDQRLN*
Ga0075458_1001279053300007363AqueousMVEDQQLRTTELTSETAEINDTPLCEELGLDAKHDPRLS*
Ga0075458_1010668723300007363AqueousMGSWTVKNQQLRKTELASKTAEINHAPLCEELGLNAKHGQRLN*
Ga0102877_120618323300007548EstuarineLGSWIFLNQQLRKTELTGETAEINHAPLCEELGLDAEHGHRLN*
Ga0102869_115921723300007627EstuarineMVKDQQLRTTELTSETAEINYTPLCEELGLDTKHGPRLS*
Ga0108970_1070728013300008055EstuaryMGSWTVKNQQLRKTELASETAEINYAPLCEELGLDAKHGQRLN*
Ga0114340_104232163300008107Freshwater, PlanktonMVEDQQLRKTELTSETAEINHTPLCEELGLDAEHGQRLN*
Ga0114341_1019394523300008108Freshwater, PlanktonMGSWTVKNQQLRKTELASKTAEINHAPLCEELGLDAKHGQRLN*
Ga0114341_1021583023300008108Freshwater, PlanktonMGSWTVKNQQLRKTELAREATEINHTSLCEELGLDAKHGQRLN*
Ga0114341_1038747823300008108Freshwater, PlanktonMGSWTVKNQQLRKTELASETAEINHTPLCEELGLDAKHGQRLN*
Ga0114341_1051074113300008108Freshwater, PlanktonSWIFLNQQLRKTELTSETAEINHTPLCEELGLDAEHGQRLN*
Ga0114341_1051390023300008108Freshwater, PlanktonGSWIFLNQQLRKTELTSETAEINHTPLCEELGLDAEHGQRLN*
Ga0114341_1051692513300008108Freshwater, PlanktonSWIFLNQQLRKTELTSETAEINHTPLCEELGLDAEHGHRLN*
Ga0114344_101590233300008111Freshwater, PlanktonMVEDQQLRTTELTSETAEINYTPLCEELGLDAKHGPRLS*
Ga0114344_122934213300008111Freshwater, PlanktonGSWIFLNQQLRKTELTSETAEINHTPLCEELGLDAEHGHRLN*
Ga0114347_102097083300008114Freshwater, PlanktonLGSWIFLNQQLRKTELTSETAEINHTPLCEEMGLDAEHGQRLN*
Ga0114337_109767153300008262Freshwater, PlanktonLGSWIFLNQQLRKTELTSETAEINHTPLCEELGLDAEHGLN*
Ga0114337_118702123300008262Freshwater, PlanktonMGSWTVKNQQLRKTELASKAAEINHTPLCEELGLDAKHGQRLN*
Ga0104242_106106523300008962FreshwaterMEINQQLRKTELASETAEINHTPLCEELGLDAKHRQRLN*
Ga0129333_1015278443300010354Freshwater To Marine Saline GradientMVKDQQLRTTELTSETAEINYTPLCEELGLDAKHGPRLS*
Ga0129333_1032136333300010354Freshwater To Marine Saline GradientWGCSNQQLRKTELASKTAEINHTPLGKELGLDEEHGLRID*
Ga0129333_1087093223300010354Freshwater To Marine Saline GradientLDSNNQQLRKTELASEAAEINYAPLCEKLGLNAKHGQRLN*
Ga0129333_1149148813300010354Freshwater To Marine Saline GradientFSRKLGSWIFLNQQLRKTELTSETAEINHTPLCEELGLDTEHGYRLN*
Ga0129336_1059482623300010370Freshwater To Marine Saline GradientLLSKFLMGSWTVKNQQLRKTELASETAEINHTPLCEELGLDTKHEQRLN*
Ga0129336_1074437023300010370Freshwater To Marine Saline GradientMVEDQQLRTTELTSETAEINDTPLCEELGLDAKHGPRLS*
Ga0119951_111628623300012000FreshwaterMEINQQLRKTELASETAEINHAPLCEELGLYAEHGE
Ga0119955_110874823300012006FreshwaterLELLDQQLRTTELASETAEINHAPFCEELEPDAKHGRKNKRNPVM
Ga0129337_138681133300012968AqueousLGSWIFLNQQLRKTELTSETAEINHTPLCEELGLDAEHGHRLN*
Ga0129338_100429323300012970AqueousLGSWIFLNQQLRKTELTSETAEINHTPLCEELGLNAKHGQRLN*
Ga0119946_100496333300014801AquaticLELLDQQLRTTELASETAEINHTPLCEELEPDAKHG*
Ga0208084_100116683300020499FreshwaterLGSWIFLNQQLRKTELTSETAEINHTPLCEEMGLDAEHGQRLN
Ga0207935_1000515133300020516FreshwaterLGSWIFLNQQLRKTELTSETAEINHTPLCEELGLDAEHGQRLN
Ga0208360_103754323300020551FreshwaterMVEDQQLRTTELTSETAEINYTPLCEELGLDAEHGQRLN
Ga0214917_1010671123300022752FreshwaterLDLKNQQLRTTELASETAEINHTPLCEELEPDAKHGVKSKRIKSL
Ga0214917_1017948133300022752FreshwaterMGSWTVKNQQLRKTELASETAEINHTSLCEELGLDAKHWQRLN
Ga0255147_105383023300024289FreshwaterMVEDQQLRTTELTSETAEINDTPLCEELGLDAKHGPRLS
Ga0255148_106047823300024306FreshwaterMVEDQQLRTTELTSETAEINDTPLCEELGLDAKHGPR
Ga0255141_103194623300024351FreshwaterMDIYFLPSRFLMGSWTVKNQQLRKTELASETAEINHAPLCEELGLDAKHEQRLN
Ga0256330_113944113300024481FreshwaterLDLKNQQLRTTELASETAEINHTPLCEELEPDAKHG
Ga0255203_105048423300024491FreshwaterLGSWIFLNQQLRKTELTSETAEINHAPLCEELGLDAEHG
Ga0255189_101835013300024492FreshwaterLGSWTVKNQQLRKTELASKTAEINHAPLCEELGLDAKH
Ga0255194_104594723300024494FreshwaterDIYFLPSRFLMGSWTVKNQQLRKTELASKTAEINHAPLCEELGLDAKHGQRLN
Ga0255152_104873213300024503FreshwaterKILVIDIYFLLSKFLMGSWTVKNQQLRKTELASETAEINHTPLCEELGLDAKHGQRLN
Ga0255144_102159633300024513FreshwaterIDIYYLLSKFLMGSWTVKNQQLRKTELASETAEINHTPLCEELGLDAKHGQRLN
Ga0255144_106195413300024513FreshwaterMGSWTVKNQQLRKTELASETAEINHTPLCEELGLDAKH
Ga0256339_101998413300024857FreshwaterMDIYFLPSRFLMGSWTVKNQQLRKTELASETAEINHAPLC
Ga0255271_106223623300024864FreshwaterMVEDQQLRTTELTSETAEINDTPLCEELGLDAEHGHRLN
Ga0256340_112367713300024865FreshwaterMDIYFLPSRFLMGSWTVKNQQLRKTELASETAEINHAPLCEELG
Ga0256340_114635323300024865FreshwaterGSWTVKNQQLRKTELASETAEINHASLCEELGFDAKHRQRLN
Ga0208546_104297133300025585AqueousNFKTLVIDIYFLPSRFLMGSWTGKNQQLRKTELASKTAEINHAPLCEELGLDAKHGHRLN
Ga0208546_108629523300025585AqueousLDSKNQQLRKTELASKAAEINHTPLCEELGLDAKHEQRLN
Ga0208546_112365323300025585AqueousMDIYFLPSRFLMGSWTVKNQQLRKTELASKTAEINHAPLCEELGLNAKHEQRLN
Ga0208147_102191923300025635AqueousMVEDQQLRTTELTSETAEINDTPLCEELGLDAKHDPRLS
Ga0208147_104869113300025635AqueousLEENQQLCTTELASETAEINHTPLCEELEPDTKHER
Ga0208147_110450123300025635AqueousLGSWIFLNQQLRKTELTSETAEINHTPLCEELGLDAEHG
Ga0208784_103858743300025732AqueousMGSWTVKNQQLRKTELASETAEINHAPLCEEPGLNAKHGQRLN
Ga0208784_104933523300025732AqueousMGSWTVKNQQLRKTELASETAEINHAPLCEELGLDAKHGQRLN
Ga0208005_101540523300025848AqueousMVEDQQLRTTELTSETAEINYTPLCEVLGLDTKHGPRLS
Ga0255155_101657323300026455FreshwaterMVENQQLRTTELTSETAEINHAPLCEELGLDAKHGQRLN
Ga0255156_100487233300026478FreshwaterMGSWTVKNQQLRKTELASKAAEINHTPLCEELALDAKHEQRLN
Ga0255188_102934413300027079FreshwaterMGSWTVKNQQLRKTELASETAEINHTPLCEELGLDAKHEQRLN
Ga0255073_105443923300027135FreshwaterSVGSWIVEDQQLRTTELTSETAEINYTPLCEELGLDAKHGPRLS
Ga0209358_1026853733300027804Freshwater LakeDIYFLLSKFLMGSWTVKNQQLRKTELASETAEINHAPLCEELGLDAKHGQRLN
Ga0209990_1003802053300027816Freshwater LakeFLNQQLRKTELTSETAEINHTPLCEELGLDAEHGYRLN
Ga0255200_103003123300028066FreshwaterLGSWIFLNQQLRKTELTSETAEINHTPLCEELGLDTEHG
Ga0255192_102672313300028067FreshwaterSRKLGSWIFLNQQLRKTELTSETAEINHTPLCEELGLDAEHG
Ga0255190_103163313300028083FreshwaterLLSKFLMGSWTVKNQQLRKTELASKTAEINYAPLCEELGLNSKHGQRLN
Ga0255201_101589213300028086FreshwaterFKTLVIDIYYLLSKFLMGSWTVKNQQLRKTELASETAEINHTPLCEELGLDAEHG
Ga0119945_100101343300029933AquaticLGSWIFLNQQLRKTELTSETAEINHAPLCEELGLDAEHGHRLN
Ga0315907_1060849913300031758FreshwaterLGSWIFLNQQLRKTELTSETAEINHTPLCEELGLDAEHGKRLS
Ga0315900_1074591423300031787FreshwaterLSSWIFLNQQLRKTELTSETAEINHASLCEELGLDAEHGKRLS
Ga0315900_1108411823300031787FreshwaterLGSWIFLIQQLRKTELTSETAEINHTPLCEELGIDAEHGQRLN
Ga0315904_1140021923300031951FreshwaterKNQQLRKTELASKTAEINHAPLCEELGLNAKHGQRLN
Ga0315904_1143447613300031951FreshwaterMGSWTVKNQQLRKTELASKTAEINHAPLCEELGLNAKHGQRLN
Ga0315906_1100832813300032050FreshwaterLGSWIFLNQQLRKTELTSETAEINHASLCEELGLDAEHGKRLS
Ga0315905_1062290813300032092FreshwaterIFLNQQLRKTELTSETAEINHTPLCEELGLDAEHGQRLN
Ga0315905_1162277923300032092FreshwaterIYFLLSKNLMGSWTVKNQQLRKTELASETAEINHAPLCEELGLDAKHGQRLN
Ga0315902_1104703223300032093FreshwaterLGSWTVKNQQLRKTELASKTAEINHAPLCEELGLDAKHGQRLN
Ga0315903_1111401423300032116FreshwaterLGSWIFLNQQLRKTELTSETAEINHAPLCEELGLDAEHGQRLN
Ga0334996_0074819_363_4793300033994FreshwaterVEDQQLRTTELTSETAEINYTPLCEELGLDTKHGPRLS
Ga0335066_0396728_641_7543300034112FreshwaterLNQQLRKTELTSETAEINHTPLCEELGLDAEHGKRLS


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