Basic Information | |
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Family ID | F099113 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 103 |
Average Sequence Length | 47 residues |
Representative Sequence | MKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHNIR |
Number of Associated Samples | 80 |
Number of Associated Scaffolds | 102 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 91.18 % |
% of genes near scaffold ends (potentially truncated) | 13.59 % |
% of genes from short scaffolds (< 2000 bps) | 66.99 % |
Associated GOLD sequencing projects | 69 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.63 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (48.544 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine (20.388 % of family members) |
Environment Ontology (ENVO) | Unclassified (77.670 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (87.379 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 49.35% β-sheet: 0.00% Coil/Unstructured: 50.65% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.63 |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Marine Deep Subsurface Seawater Microbial Mat Aqueous Seawater Freshwater To Marine Saline Gradient Marine Seawater Salt Marsh Marine Estuarine Water Pelagic Marine Seawater Pelagic Marine Marine Seawater Pond Water Soil |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
DelMOSum2010_100285256 | 3300000101 | Marine | MKDAEIILQFDQSIELIIQGLAARSGREFQEVLLLLQKGRKLHGTHDT* |
DelMOSum2010_100853034 | 3300000101 | Marine | MKDAEIIRQFDQNVELIIEGLAARSGREFQEILLLLQKGRKLHGTHST* |
DelMOSpr2010_102516521 | 3300000116 | Marine | MKDAEIIRLFDQNIEIIIEGLAARSGREFKEVLLLLQKGRKLHGTHNIR* |
JGI20152J14361_100363414 | 3300001344 | Pelagic Marine | MKDAEIIHLFDQNVELIIEGLAARSGREFQEVLLLLQKGRKLHGTHGIR* |
JGI26088J50261_10037512 | 3300003409 | Marine | MKDGEIIRQFDQSIELIIEGLAARSGREFKEVLLLLQKGRKLHGTHGIR* |
JGI26088J50261_10661013 | 3300003409 | Marine | MTNKEIIRQFDQAVELFIEGLAARSGRDFKEVLELLQQARVKGG* |
JGI26086J50260_10362933 | 3300003410 | Marine | MKDAEIIRLFDQNIELIIEGLAARSGREFREVLLLLQKGRKLHGAHNIR* |
JGI26086J50260_10707612 | 3300003410 | Marine | MKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGAHNT* |
JGI26260J51721_10087795 | 3300003580 | Marine | MKDAEIIRLFDQNLELIIEGLAARSGREFNEVLLLLQKGRKLHGAHDIR* |
JGI26082J51739_100239471 | 3300003617 | Marine | MKDAEIIRLFDQNLELIIEGLAARSGREFNEVLLLLQEGRKLHGTHNIR* |
JGI26085J52751_10239793 | 3300003908 | Marine | MKDAEIIRXFDQNIEXXIEGXAARSGREFQEVLLLLQKGRKLHGAHNT* |
JGI26085J52751_10600291 | 3300003908 | Marine | MKDAEIIRLFDQNLELIIEGLAAQSGRDFKEVLLLLQEGRKLNGTHDIR* |
Ga0055584_1021885323 | 3300004097 | Pelagic Marine | MNDKEIISLFDQNIELIIEGLAAKSGRQFLDVLELLQKARNQK* |
Ga0076924_12674991 | 3300005747 | Marine | MNDKEIISLFDQNIELIIEGLAAKSGRQFLDVLQLLQKARNQK* |
Ga0098048_100395410 | 3300006752 | Marine | MTDKQIIRQFDQSIEIIIEGLASKSGRKFKEVLELLQRTRVKGD* |
Ga0098048_10085345 | 3300006752 | Marine | MNDREIINLFDKNVELIIEGLASRSGRDFEEILFLLQKGRDKK* |
Ga0098054_10013329 | 3300006789 | Marine | MTDKQIICQFDQSIEIIIEGLASKSGRNFKEVLELLQRTRVKGD* |
Ga0070749_102887452 | 3300006802 | Aqueous | MKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHDT* |
Ga0070752_11279954 | 3300007345 | Aqueous | ELISLFDQNIELIIEGLAAKSGRQFLDVLQLRKKARNQK* |
Ga0070753_11551671 | 3300007346 | Aqueous | MKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHATHNIR* |
Ga0099847_10590401 | 3300007540 | Aqueous | MKDAEIIRQFDQSIEIIIEGLAARSGREFKEVLLLLQKGRKLHGTHSIR* |
Ga0102960_12752103 | 3300009000 | Pond Water | MTDKKIIVQFDQAVELIIEGLAARSGRDFKEVLEILQQARVKGG* |
Ga0115549_10851151 | 3300009074 | Pelagic Marine | MKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTH |
Ga0115549_11293163 | 3300009074 | Pelagic Marine | MKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGAHDT* |
Ga0115549_11827372 | 3300009074 | Pelagic Marine | MNDKEIINFFDQSVELIIEGLAARSGREFKEVLLLLQKGRNLYGTHST* |
Ga0115549_12404261 | 3300009074 | Pelagic Marine | IIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHNT* |
Ga0115550_12901002 | 3300009076 | Pelagic Marine | MRDAEIIKQFDQAVELFIEGLAARSGRDFKEVLELLQQARVKGG* |
Ga0115548_10530911 | 3300009423 | Pelagic Marine | MKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLH |
Ga0115547_11247031 | 3300009426 | Pelagic Marine | IIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHDT* |
Ga0115005_1000043624 | 3300009432 | Marine | MKDAEIISLFDKNLEVVIEGLAAKSGRNFAEVLKLLQSKRN* |
Ga0115546_10160177 | 3300009435 | Pelagic Marine | MKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHNT* |
Ga0115008_116264001 | 3300009436 | Marine | LSGSLSGEVVMTDKQIICQFDQSIEIIIEGLASKSGRNFKEVLELLQRTRVKGD* |
Ga0115567_101852731 | 3300009508 | Pelagic Marine | MKDAEIIRLFDQNVDLIIEGLAAKSGRQFLDVLQLLQKARNQK* |
Ga0098049_10062387 | 3300010149 | Marine | MKDAEIIRLFDQNLELIIEGLAARSGREFKEVLLLLQEGRKLHGPHNIR* |
Ga0129324_100267657 | 3300010368 | Freshwater To Marine Saline Gradient | MKDAEIIRQFDQNIELIIEGLAARSGREFQEVILLLQKGRKLHGTHN |
Ga0129324_103048522 | 3300010368 | Freshwater To Marine Saline Gradient | MKDAEIIHLFDQNVELIIEGLAARSGREFQEVLLLLQKGR |
Ga0129327_109219742 | 3300013010 | Freshwater To Marine Saline Gradient | MTDKEIIVQFDQAVELIIEGLAARSSRDFKEVLELLQQARVKGG* |
Ga0182090_16087301 | 3300016797 | Salt Marsh | MKDAEIILQFDQSIELIIQGLAARSGREFQEVLLLLQKGRKLHG |
Ga0181390_10345625 | 3300017719 | Seawater | MKNAEIIRLFDQNLELIIEGLAAQSGRDFKEVLLLLQEGRKLNGAHNIR |
Ga0181390_10452622 | 3300017719 | Seawater | MKDAEIIRLFDQNIELIIEGLAARSGRDFKEVLLLLQKGRKLHGTHNFR |
Ga0181401_11172913 | 3300017727 | Seawater | MRDAEIIRQFDQNIELIIEGLAARSGREFNEVLLLLQEGRKLHGTHDTR |
Ga0181399_11284843 | 3300017742 | Seawater | MKDAEIIRLFDQNLELIIEGLAARSGREFNEVLLLLQEGRKLDGTNSFR |
Ga0181400_10351334 | 3300017752 | Seawater | MKDAEIIRLFDQNVELVIEGLAARSGRDFKEVLLLLQKGRKLHGAHSFR |
Ga0187217_10801072 | 3300017770 | Seawater | MKDVEIIRLFDQSLELVIEGLAARSGREFKEVLLLLQKGRKLDGTNSFR |
Ga0181607_103255732 | 3300017950 | Salt Marsh | MNDKEIISLFDQNIELIIEGLAAKSGRQFLDVLQLLQKARNQK |
Ga0206128_13355063 | 3300020166 | Seawater | MNDKEIINFFDQSVELIIEGLAARSGREFKEVLLLLQKGRNLYGTHNT |
Ga0206129_100229753 | 3300020182 | Seawater | MKDAEIILQFDQSIELIIQGLAARSGREFQEVLLLLQKGRKLHGTHDI |
Ga0206130_103217612 | 3300020187 | Seawater | MKDVEIIRQFDQSIELIIEGLAARSGREFQEVLLLLQKGRKLHGAHNIR |
Ga0206682_100497775 | 3300021185 | Seawater | MKDAEIIRLFDQNIELIIEGLAARSGRDFKEVLLLLQKGRKLHGTHSFR |
Ga0222717_104763182 | 3300021957 | Estuarine Water | MRDAEIIKQFDQAVELIIEGLAARSGRDFKEVLDLLQQARVKGG |
Ga0222718_100193253 | 3300021958 | Estuarine Water | MNDKEIINFFDQSVELIIEGLAARSGREFKEVLLLLQKGRNLYGTHST |
Ga0222715_106495511 | 3300021960 | Estuarine Water | MKDAEIIRLFDQNLELIIEGLAARSGREFKEVLLLLQEGRKLNGTHNIR |
Ga0212030_10116851 | 3300022053 | Aqueous | MKDSEIIRLFDQNIEIIIEGLAARSGREFKEVLLLLQKGRKLHGTHNIR |
Ga0212025_10232073 | 3300022057 | Aqueous | MKDAEIIRLFDQNIEIIIEGLAARSGREFKEVLLLLQKGRKLHGTHNIR |
Ga0196901_11972452 | 3300022200 | Aqueous | MKDAEIIRQFDQSIEIIIEGLAARSGREFREVLLLLQKGRKLHGTHSIR |
(restricted) Ga0233432_104538722 | 3300023109 | Seawater | MKDAEIIRLFDQNIELIIEGLAARSGREFREVLLLLQKGRKLHGAHNIR |
Ga0233402_11287682 | 3300024229 | Seawater | MKDAEIIRLFDQNLELVIEGLAARSGREFKEVLLLLQEGRKLNGTHDIR |
Ga0210003_13020012 | 3300024262 | Deep Subsurface | MTNKEIIRQFDQAVELFIEGLAARSGRDFKEVLELLQQARVKGG |
Ga0228670_10039755 | 3300024319 | Seawater | MKDAEIIRLFDQNLELIIEGLAARSGREFKEVLLLLQEGRKLHGTHDIR |
Ga0228672_10114735 | 3300024335 | Seawater | MKDAEIIRLFDQNLELIIEGLAARSGREFKEVLLLLQEGRKLHGTNSFR |
(restricted) Ga0255049_102696071 | 3300024517 | Seawater | MKDAEIIRLFDQSIELIIEGLAARSGREFREVLLLLQKGRKLHGTNDFR |
(restricted) Ga0255048_1000168410 | 3300024518 | Seawater | MKDAEIIRLFDQNLELIIEGLAAQSGRDFKEVLLLLQEGRKLNGTHNIR |
Ga0208667_10046167 | 3300025070 | Marine | MNDREIINLFDKNVELIIEGLASRSGRDFEEILFLLQKGRDKK |
Ga0208667_10312383 | 3300025070 | Marine | MTDKQIIRQFDQSIEIIIEGLASKSGRKFKEVLELLQRTRVKGD |
Ga0208298_10136123 | 3300025084 | Marine | MTDKQIICQFDQSIEIIIEGLASKSGRNFKEVLELLQRTRVKGD |
Ga0209557_100232714 | 3300025483 | Marine | MKDAEIIRLFDQNLELIIEGLAARSGREFNEVLLLLQKGRKLHGAHDIR |
Ga0208303_10030768 | 3300025543 | Aqueous | MKDAEIIRQFDQNIELIIDGLAARSGREFQEVLLLLQKGRKLHGAHNT |
Ga0208303_10031425 | 3300025543 | Aqueous | MKDAEIIHLFDQNVELIIEGLAARSGRDFQEVLLLLQKGRKLHGTHSIR |
Ga0208303_10448331 | 3300025543 | Aqueous | MKDAEIIHLFDQNVELIIEGLAARSGRDFQEVLLLLQKGRKLHGTH |
Ga0209304_100225811 | 3300025577 | Pelagic Marine | MKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHNT |
Ga0209304_10101847 | 3300025577 | Pelagic Marine | MKDAEIIHLFDQNVELIIEGLAARSGREFQEVLLLLQKGRKLHGTHGIR |
Ga0209094_10184501 | 3300025594 | Pelagic Marine | EIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHDT |
Ga0209654_100083728 | 3300025608 | Marine | MKDGEIIRQFDQSIELIIEGLAARSGREFKEVLLLLQKGRKLHGTHGIR |
Ga0209138_10388614 | 3300025617 | Marine | MKDAEIIRLFDQNVELIIEGLAARSGRDFKEILLLLQKGRKLHGTHSFR |
Ga0209138_10900282 | 3300025617 | Marine | MKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGAHDT |
Ga0209504_100268417 | 3300025621 | Pelagic Marine | MKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHDT |
Ga0209504_100527917 | 3300025621 | Pelagic Marine | MKDAEIIRLFDQNLELIIEGLAARSGREFKEVLFLLQEGRKLDGTNSFR |
Ga0209504_10867853 | 3300025621 | Pelagic Marine | MNDKEIISLFDQNIELIIEGLAAKSGRQFLDVLELLQKARNQK |
Ga0209194_10004631 | 3300025632 | Pelagic Marine | IIHLFDQNVELIIEGLAARSGREFQEVLLLLQKGRKLHGTHGIR |
Ga0209194_100046346 | 3300025632 | Pelagic Marine | MKDAEIIHLFDQNVELIIEGLAARSGREFQEVLLLLQKGRKLHGTHG |
Ga0209833_100060421 | 3300025641 | Pelagic Marine | MKDAEIIRLFDQSIELIIEGLAARSGREFKEVLLLLQKGRKLHGAHNIR |
Ga0209659_11214203 | 3300025658 | Marine | MKDAEIIRLFDQNIELIIEGLAARSGREFREVLLLLQKGRKLHGTHGFR |
Ga0209251_10400945 | 3300025668 | Marine | MKDAEIIRLFDQNLELIIEGLAAQSGRDFKEVLLLLQEGRKLNGTHDIR |
Ga0208898_11162022 | 3300025671 | Aqueous | MKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHNIR |
Ga0209652_10528392 | 3300025684 | Marine | MKDSEIIRLFDQNLELIIEGLAARSGREFNEVLLLLQEGRKLHGTHNIR |
Ga0209653_10043203 | 3300025695 | Marine | MKDSEIIRLFDQNLELIIEGLAARSGREFKEILLLLQEGRKLHGAHGLR |
Ga0209137_10692682 | 3300025767 | Marine | MKDAEIIRLFDQNLELIIEGLAARSGREFNEVLLLLQEGRKLHGTHNIR |
Ga0209137_11488743 | 3300025767 | Marine | MKDSEIIRLFDQNLELIIEGLAARSGREFKEILLLLQEGRKLHGTHDIR |
Ga0209193_10924613 | 3300025816 | Pelagic Marine | MLQGKIMKDAEIIRLFDQNVELIIEGLAARSGREFQEVLLLLQKGRKLHGTHGIR |
Ga0209666_11524613 | 3300025870 | Marine | MNDKEIINFFDQSVELIIEGLAARSGREFKEVLLLLQKGRNLYGTHGT |
Ga0209555_101418274 | 3300025879 | Marine | MNDKEIINSFDQSVELIIEGLAARSGREFKEVLLLLQKGRNLYGTHST |
Ga0209534_101653622 | 3300025880 | Pelagic Marine | MKDAEIIRQFDQNIELIIEGLATRSGREFKEVLLLLQKGRKLHGTHNT |
Ga0228644_10037466 | 3300026453 | Seawater | MKDAEIIRLFDQNLELIIEGLAAQSGKDFKEVLLLLQEGRKLHGTHDIR |
Ga0209037_10627482 | 3300027612 | Marine | MKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHGT |
Ga0209302_1000023949 | 3300027810 | Marine | MKDAEIISLFDKNLEVVIEGLAAKSGRNFAEVLKLLQSKRN |
Ga0307380_1002525810 | 3300031539 | Soil | MKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHSIR |
Ga0307380_102446721 | 3300031539 | Soil | MKDAEIIRQFDQSIQLIIEGLAARSGREFKEVLLLLQQARVKGG |
Ga0307380_111821783 | 3300031539 | Soil | MKDAEIIHLFDQNVELIIEGLAARSGRDFKEVLELLQQARVKGG |
Ga0307379_105794152 | 3300031565 | Soil | MKDAEIIHLFDQNVELIIEGLAARSGREFQEVLLLLQKGRKLHGTDGIR |
Ga0307378_102091286 | 3300031566 | Soil | MKDAEIIRQFDQSIELIIEGLAARSGREFKEVLLLLQKGRKLHGTHDT |
Ga0307378_107196113 | 3300031566 | Soil | MKDAEIIRLFDQSIELIIEGLAARSGREFKEVLLLLQKGRKLHGTHNT |
Ga0316202_100641092 | 3300032277 | Microbial Mat | MLQGKIMKDAEIIRLFDQNIELIIEGLAARSGRDFQEVLLLLQKGRKLHGTHSIR |
Ga0316202_100769533 | 3300032277 | Microbial Mat | MKDSEIIRLFDQNIELIIEGLAARSGRDFQEILLLLQKGRKLHGTHGIR |
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