NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099113

Metagenome / Metatranscriptome Family F099113

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099113
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 47 residues
Representative Sequence MKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHNIR
Number of Associated Samples 80
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 91.18 %
% of genes near scaffold ends (potentially truncated) 13.59 %
% of genes from short scaffolds (< 2000 bps) 66.99 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction Yes
3D model pTM-score0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (48.544 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine
(20.388 % of family members)
Environment Ontology (ENVO) Unclassified
(77.670 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(87.379 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.
1DelMOSum2010_100285256
2DelMOSum2010_100853034
3DelMOSpr2010_102516521
4JGI20152J14361_100363414
5JGI26088J50261_10037512
6JGI26088J50261_10661013
7JGI26086J50260_10362933
8JGI26086J50260_10707612
9JGI26260J51721_10087795
10JGI26082J51739_100239471
11JGI26085J52751_10239793
12JGI26085J52751_10600291
13Ga0055584_1021885323
14Ga0076924_12674991
15Ga0098048_100395410
16Ga0098048_10085345
17Ga0098054_10013329
18Ga0070749_102887452
19Ga0070752_11279954
20Ga0070753_11551671
21Ga0099847_10590401
22Ga0102960_12752103
23Ga0115549_10851151
24Ga0115549_11293163
25Ga0115549_11827372
26Ga0115549_12404261
27Ga0115550_12901002
28Ga0115548_10530911
29Ga0115547_11247031
30Ga0115005_1000043624
31Ga0115546_10160177
32Ga0115008_116264001
33Ga0115567_101852731
34Ga0098049_10062387
35Ga0129324_100267657
36Ga0129324_103048522
37Ga0129327_109219742
38Ga0182090_16087301
39Ga0181390_10345625
40Ga0181390_10452622
41Ga0181401_11172913
42Ga0181399_11284843
43Ga0181400_10351334
44Ga0187217_10801072
45Ga0181607_103255732
46Ga0206128_13355063
47Ga0206129_100229753
48Ga0206130_103217612
49Ga0206682_100497775
50Ga0222717_104763182
51Ga0222718_100193253
52Ga0222715_106495511
53Ga0212030_10116851
54Ga0212025_10232073
55Ga0196901_11972452
56Ga0233432_104538722
57Ga0233402_11287682
58Ga0210003_13020012
59Ga0228670_10039755
60Ga0228672_10114735
61Ga0255049_102696071
62Ga0255048_1000168410
63Ga0208667_10046167
64Ga0208667_10312383
65Ga0208298_10136123
66Ga0209557_100232714
67Ga0208303_10030768
68Ga0208303_10031425
69Ga0208303_10448331
70Ga0209304_100225811
71Ga0209304_10101847
72Ga0209094_10184501
73Ga0209654_100083728
74Ga0209138_10388614
75Ga0209138_10900282
76Ga0209504_100268417
77Ga0209504_100527917
78Ga0209504_10867853
79Ga0209194_10004631
80Ga0209194_100046346
81Ga0209833_100060421
82Ga0209659_11214203
83Ga0209251_10400945
84Ga0208898_11162022
85Ga0209652_10528392
86Ga0209653_10043203
87Ga0209137_10692682
88Ga0209137_11488743
89Ga0209193_10924613
90Ga0209666_11524613
91Ga0209555_101418274
92Ga0209534_101653622
93Ga0228644_10037466
94Ga0209037_10627482
95Ga0209302_1000023949
96Ga0307380_1002525810
97Ga0307380_102446721
98Ga0307380_111821783
99Ga0307379_105794152
100Ga0307378_102091286
101Ga0307378_107196113
102Ga0316202_100641092
103Ga0316202_100769533
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 49.35%    β-sheet: 0.00%    Coil/Unstructured: 50.65%
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51015202530354045MKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHNIRSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
51.5%48.5%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Marine
Deep Subsurface
Seawater
Microbial Mat
Aqueous
Seawater
Freshwater To Marine Saline Gradient
Marine
Seawater
Salt Marsh
Marine
Estuarine Water
Pelagic Marine
Seawater
Pelagic Marine
Marine
Seawater
Pond Water
Soil
9.7%2.9%10.7%3.9%2.9%20.4%2.9%18.4%2.9%2.9%2.9%5.8%5.8%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1002852563300000101MarineMKDAEIILQFDQSIELIIQGLAARSGREFQEVLLLLQKGRKLHGTHDT*
DelMOSum2010_1008530343300000101MarineMKDAEIIRQFDQNVELIIEGLAARSGREFQEILLLLQKGRKLHGTHST*
DelMOSpr2010_1025165213300000116MarineMKDAEIIRLFDQNIEIIIEGLAARSGREFKEVLLLLQKGRKLHGTHNIR*
JGI20152J14361_1003634143300001344Pelagic MarineMKDAEIIHLFDQNVELIIEGLAARSGREFQEVLLLLQKGRKLHGTHGIR*
JGI26088J50261_100375123300003409MarineMKDGEIIRQFDQSIELIIEGLAARSGREFKEVLLLLQKGRKLHGTHGIR*
JGI26088J50261_106610133300003409MarineMTNKEIIRQFDQAVELFIEGLAARSGRDFKEVLELLQQARVKGG*
JGI26086J50260_103629333300003410MarineMKDAEIIRLFDQNIELIIEGLAARSGREFREVLLLLQKGRKLHGAHNIR*
JGI26086J50260_107076123300003410MarineMKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGAHNT*
JGI26260J51721_100877953300003580MarineMKDAEIIRLFDQNLELIIEGLAARSGREFNEVLLLLQKGRKLHGAHDIR*
JGI26082J51739_1002394713300003617MarineMKDAEIIRLFDQNLELIIEGLAARSGREFNEVLLLLQEGRKLHGTHNIR*
JGI26085J52751_102397933300003908MarineMKDAEIIRXFDQNIEXXIEGXAARSGREFQEVLLLLQKGRKLHGAHNT*
JGI26085J52751_106002913300003908MarineMKDAEIIRLFDQNLELIIEGLAAQSGRDFKEVLLLLQEGRKLNGTHDIR*
Ga0055584_10218853233300004097Pelagic MarineMNDKEIISLFDQNIELIIEGLAAKSGRQFLDVLELLQKARNQK*
Ga0076924_126749913300005747MarineMNDKEIISLFDQNIELIIEGLAAKSGRQFLDVLQLLQKARNQK*
Ga0098048_1003954103300006752MarineMTDKQIIRQFDQSIEIIIEGLASKSGRKFKEVLELLQRTRVKGD*
Ga0098048_100853453300006752MarineMNDREIINLFDKNVELIIEGLASRSGRDFEEILFLLQKGRDKK*
Ga0098054_100133293300006789MarineMTDKQIICQFDQSIEIIIEGLASKSGRNFKEVLELLQRTRVKGD*
Ga0070749_1028874523300006802AqueousMKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHDT*
Ga0070752_112799543300007345AqueousELISLFDQNIELIIEGLAAKSGRQFLDVLQLRKKARNQK*
Ga0070753_115516713300007346AqueousMKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHATHNIR*
Ga0099847_105904013300007540AqueousMKDAEIIRQFDQSIEIIIEGLAARSGREFKEVLLLLQKGRKLHGTHSIR*
Ga0102960_127521033300009000Pond WaterMTDKKIIVQFDQAVELIIEGLAARSGRDFKEVLEILQQARVKGG*
Ga0115549_108511513300009074Pelagic MarineMKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTH
Ga0115549_112931633300009074Pelagic MarineMKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGAHDT*
Ga0115549_118273723300009074Pelagic MarineMNDKEIINFFDQSVELIIEGLAARSGREFKEVLLLLQKGRNLYGTHST*
Ga0115549_124042613300009074Pelagic MarineIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHNT*
Ga0115550_129010023300009076Pelagic MarineMRDAEIIKQFDQAVELFIEGLAARSGRDFKEVLELLQQARVKGG*
Ga0115548_105309113300009423Pelagic MarineMKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLH
Ga0115547_112470313300009426Pelagic MarineIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHDT*
Ga0115005_10000436243300009432MarineMKDAEIISLFDKNLEVVIEGLAAKSGRNFAEVLKLLQSKRN*
Ga0115546_101601773300009435Pelagic MarineMKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHNT*
Ga0115008_1162640013300009436MarineLSGSLSGEVVMTDKQIICQFDQSIEIIIEGLASKSGRNFKEVLELLQRTRVKGD*
Ga0115567_1018527313300009508Pelagic MarineMKDAEIIRLFDQNVDLIIEGLAAKSGRQFLDVLQLLQKARNQK*
Ga0098049_100623873300010149MarineMKDAEIIRLFDQNLELIIEGLAARSGREFKEVLLLLQEGRKLHGPHNIR*
Ga0129324_1002676573300010368Freshwater To Marine Saline GradientMKDAEIIRQFDQNIELIIEGLAARSGREFQEVILLLQKGRKLHGTHN
Ga0129324_1030485223300010368Freshwater To Marine Saline GradientMKDAEIIHLFDQNVELIIEGLAARSGREFQEVLLLLQKGR
Ga0129327_1092197423300013010Freshwater To Marine Saline GradientMTDKEIIVQFDQAVELIIEGLAARSSRDFKEVLELLQQARVKGG*
Ga0182090_160873013300016797Salt MarshMKDAEIILQFDQSIELIIQGLAARSGREFQEVLLLLQKGRKLHG
Ga0181390_103456253300017719SeawaterMKNAEIIRLFDQNLELIIEGLAAQSGRDFKEVLLLLQEGRKLNGAHNIR
Ga0181390_104526223300017719SeawaterMKDAEIIRLFDQNIELIIEGLAARSGRDFKEVLLLLQKGRKLHGTHNFR
Ga0181401_111729133300017727SeawaterMRDAEIIRQFDQNIELIIEGLAARSGREFNEVLLLLQEGRKLHGTHDTR
Ga0181399_112848433300017742SeawaterMKDAEIIRLFDQNLELIIEGLAARSGREFNEVLLLLQEGRKLDGTNSFR
Ga0181400_103513343300017752SeawaterMKDAEIIRLFDQNVELVIEGLAARSGRDFKEVLLLLQKGRKLHGAHSFR
Ga0187217_108010723300017770SeawaterMKDVEIIRLFDQSLELVIEGLAARSGREFKEVLLLLQKGRKLDGTNSFR
Ga0181607_1032557323300017950Salt MarshMNDKEIISLFDQNIELIIEGLAAKSGRQFLDVLQLLQKARNQK
Ga0206128_133550633300020166SeawaterMNDKEIINFFDQSVELIIEGLAARSGREFKEVLLLLQKGRNLYGTHNT
Ga0206129_1002297533300020182SeawaterMKDAEIILQFDQSIELIIQGLAARSGREFQEVLLLLQKGRKLHGTHDI
Ga0206130_1032176123300020187SeawaterMKDVEIIRQFDQSIELIIEGLAARSGREFQEVLLLLQKGRKLHGAHNIR
Ga0206682_1004977753300021185SeawaterMKDAEIIRLFDQNIELIIEGLAARSGRDFKEVLLLLQKGRKLHGTHSFR
Ga0222717_1047631823300021957Estuarine WaterMRDAEIIKQFDQAVELIIEGLAARSGRDFKEVLDLLQQARVKGG
Ga0222718_1001932533300021958Estuarine WaterMNDKEIINFFDQSVELIIEGLAARSGREFKEVLLLLQKGRNLYGTHST
Ga0222715_1064955113300021960Estuarine WaterMKDAEIIRLFDQNLELIIEGLAARSGREFKEVLLLLQEGRKLNGTHNIR
Ga0212030_101168513300022053AqueousMKDSEIIRLFDQNIEIIIEGLAARSGREFKEVLLLLQKGRKLHGTHNIR
Ga0212025_102320733300022057AqueousMKDAEIIRLFDQNIEIIIEGLAARSGREFKEVLLLLQKGRKLHGTHNIR
Ga0196901_119724523300022200AqueousMKDAEIIRQFDQSIEIIIEGLAARSGREFREVLLLLQKGRKLHGTHSIR
(restricted) Ga0233432_1045387223300023109SeawaterMKDAEIIRLFDQNIELIIEGLAARSGREFREVLLLLQKGRKLHGAHNIR
Ga0233402_112876823300024229SeawaterMKDAEIIRLFDQNLELVIEGLAARSGREFKEVLLLLQEGRKLNGTHDIR
Ga0210003_130200123300024262Deep SubsurfaceMTNKEIIRQFDQAVELFIEGLAARSGRDFKEVLELLQQARVKGG
Ga0228670_100397553300024319SeawaterMKDAEIIRLFDQNLELIIEGLAARSGREFKEVLLLLQEGRKLHGTHDIR
Ga0228672_101147353300024335SeawaterMKDAEIIRLFDQNLELIIEGLAARSGREFKEVLLLLQEGRKLHGTNSFR
(restricted) Ga0255049_1026960713300024517SeawaterMKDAEIIRLFDQSIELIIEGLAARSGREFREVLLLLQKGRKLHGTNDFR
(restricted) Ga0255048_10001684103300024518SeawaterMKDAEIIRLFDQNLELIIEGLAAQSGRDFKEVLLLLQEGRKLNGTHNIR
Ga0208667_100461673300025070MarineMNDREIINLFDKNVELIIEGLASRSGRDFEEILFLLQKGRDKK
Ga0208667_103123833300025070MarineMTDKQIIRQFDQSIEIIIEGLASKSGRKFKEVLELLQRTRVKGD
Ga0208298_101361233300025084MarineMTDKQIICQFDQSIEIIIEGLASKSGRNFKEVLELLQRTRVKGD
Ga0209557_1002327143300025483MarineMKDAEIIRLFDQNLELIIEGLAARSGREFNEVLLLLQKGRKLHGAHDIR
Ga0208303_100307683300025543AqueousMKDAEIIRQFDQNIELIIDGLAARSGREFQEVLLLLQKGRKLHGAHNT
Ga0208303_100314253300025543AqueousMKDAEIIHLFDQNVELIIEGLAARSGRDFQEVLLLLQKGRKLHGTHSIR
Ga0208303_104483313300025543AqueousMKDAEIIHLFDQNVELIIEGLAARSGRDFQEVLLLLQKGRKLHGTH
Ga0209304_1002258113300025577Pelagic MarineMKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHNT
Ga0209304_101018473300025577Pelagic MarineMKDAEIIHLFDQNVELIIEGLAARSGREFQEVLLLLQKGRKLHGTHGIR
Ga0209094_101845013300025594Pelagic MarineEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHDT
Ga0209654_1000837283300025608MarineMKDGEIIRQFDQSIELIIEGLAARSGREFKEVLLLLQKGRKLHGTHGIR
Ga0209138_103886143300025617MarineMKDAEIIRLFDQNVELIIEGLAARSGRDFKEILLLLQKGRKLHGTHSFR
Ga0209138_109002823300025617MarineMKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGAHDT
Ga0209504_1002684173300025621Pelagic MarineMKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHDT
Ga0209504_1005279173300025621Pelagic MarineMKDAEIIRLFDQNLELIIEGLAARSGREFKEVLFLLQEGRKLDGTNSFR
Ga0209504_108678533300025621Pelagic MarineMNDKEIISLFDQNIELIIEGLAAKSGRQFLDVLELLQKARNQK
Ga0209194_100046313300025632Pelagic MarineIIHLFDQNVELIIEGLAARSGREFQEVLLLLQKGRKLHGTHGIR
Ga0209194_1000463463300025632Pelagic MarineMKDAEIIHLFDQNVELIIEGLAARSGREFQEVLLLLQKGRKLHGTHG
Ga0209833_1000604213300025641Pelagic MarineMKDAEIIRLFDQSIELIIEGLAARSGREFKEVLLLLQKGRKLHGAHNIR
Ga0209659_112142033300025658MarineMKDAEIIRLFDQNIELIIEGLAARSGREFREVLLLLQKGRKLHGTHGFR
Ga0209251_104009453300025668MarineMKDAEIIRLFDQNLELIIEGLAAQSGRDFKEVLLLLQEGRKLNGTHDIR
Ga0208898_111620223300025671AqueousMKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHNIR
Ga0209652_105283923300025684MarineMKDSEIIRLFDQNLELIIEGLAARSGREFNEVLLLLQEGRKLHGTHNIR
Ga0209653_100432033300025695MarineMKDSEIIRLFDQNLELIIEGLAARSGREFKEILLLLQEGRKLHGAHGLR
Ga0209137_106926823300025767MarineMKDAEIIRLFDQNLELIIEGLAARSGREFNEVLLLLQEGRKLHGTHNIR
Ga0209137_114887433300025767MarineMKDSEIIRLFDQNLELIIEGLAARSGREFKEILLLLQEGRKLHGTHDIR
Ga0209193_109246133300025816Pelagic MarineMLQGKIMKDAEIIRLFDQNVELIIEGLAARSGREFQEVLLLLQKGRKLHGTHGIR
Ga0209666_115246133300025870MarineMNDKEIINFFDQSVELIIEGLAARSGREFKEVLLLLQKGRNLYGTHGT
Ga0209555_1014182743300025879MarineMNDKEIINSFDQSVELIIEGLAARSGREFKEVLLLLQKGRNLYGTHST
Ga0209534_1016536223300025880Pelagic MarineMKDAEIIRQFDQNIELIIEGLATRSGREFKEVLLLLQKGRKLHGTHNT
Ga0228644_100374663300026453SeawaterMKDAEIIRLFDQNLELIIEGLAAQSGKDFKEVLLLLQEGRKLHGTHDIR
Ga0209037_106274823300027612MarineMKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHGT
Ga0209302_10000239493300027810MarineMKDAEIISLFDKNLEVVIEGLAAKSGRNFAEVLKLLQSKRN
Ga0307380_10025258103300031539SoilMKDAEIIRQFDQNIELIIEGLAARSGREFQEVLLLLQKGRKLHGTHSIR
Ga0307380_1024467213300031539SoilMKDAEIIRQFDQSIQLIIEGLAARSGREFKEVLLLLQQARVKGG
Ga0307380_1118217833300031539SoilMKDAEIIHLFDQNVELIIEGLAARSGRDFKEVLELLQQARVKGG
Ga0307379_1057941523300031565SoilMKDAEIIHLFDQNVELIIEGLAARSGREFQEVLLLLQKGRKLHGTDGIR
Ga0307378_1020912863300031566SoilMKDAEIIRQFDQSIELIIEGLAARSGREFKEVLLLLQKGRKLHGTHDT
Ga0307378_1071961133300031566SoilMKDAEIIRLFDQSIELIIEGLAARSGREFKEVLLLLQKGRKLHGTHNT
Ga0316202_1006410923300032277Microbial MatMLQGKIMKDAEIIRLFDQNIELIIEGLAARSGRDFQEVLLLLQKGRKLHGTHSIR
Ga0316202_1007695333300032277Microbial MatMKDSEIIRLFDQNIELIIEGLAARSGRDFQEILLLLQKGRKLHGTHGIR


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