Metagenome / Metatranscriptome Family F099087

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099087
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	79 residues
Representative Sequence	VNTFTSRDAGAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVAGRLAETAAAASGEEAEQTPALLGAG
Number of Associated Samples	91
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	70.87 %
% of genes near scaffold ends (potentially truncated)	28.16 %
% of genes from short scaffolds (< 2000 bps)	90.29 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.252 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.447 % of family members)
Environment Ontology (ENVO)	Unclassified (34.951 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.660 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.15
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.15
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF13466	STAS_2	7.77
PF12802	MarR_2	5.83
PF09339	HTH_IclR	1.94
PF06305	LapA_dom	0.97
PF13185	GAF_2	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG3771	Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family	Cell wall/membrane/envelope biogenesis [M]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.25 %
Unclassified	root	N/A	41.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.25 %
Unclassified	root	N/A	41.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.25 %
Unclassified	root	N/A	41.75 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	54.37 %
Unclassified	root	N/A	41.75 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.94 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	54.37 %
Unclassified	root	N/A	41.75 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.97 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.75 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	37.86 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.97 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.75 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	9.71 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.94 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.94 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.97 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.75 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	5.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.94 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.94 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.97 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.97 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.75 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	5.83 %
Actinoallomurus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinoallomurus	1.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.94 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.97 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.97 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.75 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	5.83 %
Actinoallomurus bryophytorum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinoallomurus → Actinoallomurus bryophytorum	1.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.94 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.97 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.97 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004139\|Ga0058897_10951846	Not Available	502	Open in IMG/M
3300005166\|Ga0066674_10313472	Not Available	737	Open in IMG/M
3300005172\|Ga0066683_10527708	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300005175\|Ga0066673_10514399	Not Available	704	Open in IMG/M
3300005186\|Ga0066676_10227485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1209	Open in IMG/M
3300005187\|Ga0066675_10321895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1124	Open in IMG/M
3300005337\|Ga0070682_100630281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	851	Open in IMG/M
3300005338\|Ga0068868_100707014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	902	Open in IMG/M
3300005435\|Ga0070714_100649460	Not Available	1015	Open in IMG/M
3300005435\|Ga0070714_100969855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	827	Open in IMG/M
3300005436\|Ga0070713_101589652	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300005437\|Ga0070710_10071620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1999	Open in IMG/M
3300005439\|Ga0070711_100246021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1400	Open in IMG/M
3300005450\|Ga0066682_10222729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1212	Open in IMG/M
3300005450\|Ga0066682_10306623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1025	Open in IMG/M
3300005546\|Ga0070696_100294026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1242	Open in IMG/M
3300005553\|Ga0066695_10887366	Not Available	510	Open in IMG/M
3300005578\|Ga0068854_101175117	Not Available	686	Open in IMG/M
3300005615\|Ga0070702_100822688	Not Available	720	Open in IMG/M
3300006028\|Ga0070717_12098774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	508	Open in IMG/M
3300006034\|Ga0066656_10253042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1132	Open in IMG/M
3300006049\|Ga0075417_10185351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	980	Open in IMG/M
3300006755\|Ga0079222_11410042	Not Available	645	Open in IMG/M
3300006796\|Ga0066665_11347112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	550	Open in IMG/M
3300006797\|Ga0066659_10744684	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	805	Open in IMG/M
3300006804\|Ga0079221_10311869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	929	Open in IMG/M
3300006852\|Ga0075433_10724556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	870	Open in IMG/M
3300006854\|Ga0075425_100507379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1388	Open in IMG/M
3300006903\|Ga0075426_10044785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3162	Open in IMG/M
3300006903\|Ga0075426_10118615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1901	Open in IMG/M
3300006904\|Ga0075424_100450512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1373	Open in IMG/M
3300006904\|Ga0075424_100871396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	960	Open in IMG/M
3300006914\|Ga0075436_100596504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	813	Open in IMG/M
3300006914\|Ga0075436_101526198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinoallomurus → Actinoallomurus bryophytorum	507	Open in IMG/M
3300007076\|Ga0075435_100278545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1427	Open in IMG/M
3300009137\|Ga0066709_100344908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2044	Open in IMG/M
3300009137\|Ga0066709_101774683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinoallomurus → Actinoallomurus bryophytorum	868	Open in IMG/M
3300010301\|Ga0134070_10462931	Not Available	509	Open in IMG/M
3300010322\|Ga0134084_10236238	Not Available	654	Open in IMG/M
3300010323\|Ga0134086_10395750	Not Available	554	Open in IMG/M
3300010323\|Ga0134086_10460359	Not Available	521	Open in IMG/M
3300010326\|Ga0134065_10061001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1184	Open in IMG/M
3300010333\|Ga0134080_10349088	Not Available	674	Open in IMG/M
3300010337\|Ga0134062_10530477	Not Available	596	Open in IMG/M
3300010373\|Ga0134128_10211708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2180	Open in IMG/M
3300010379\|Ga0136449_100638484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1803	Open in IMG/M
3300011107\|Ga0151490_1318142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1043	Open in IMG/M
3300012198\|Ga0137364_10577421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	846	Open in IMG/M
3300012285\|Ga0137370_10417175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	814	Open in IMG/M
3300012356\|Ga0137371_10289532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1277	Open in IMG/M
3300012356\|Ga0137371_10868454	Not Available	686	Open in IMG/M
3300012359\|Ga0137385_10700057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	846	Open in IMG/M
3300012373\|Ga0134042_1153400	Not Available	534	Open in IMG/M
3300012977\|Ga0134087_10350972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	705	Open in IMG/M
3300012989\|Ga0164305_10614546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	875	Open in IMG/M
3300012989\|Ga0164305_10798226	Not Available	783	Open in IMG/M
3300014157\|Ga0134078_10118552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1010	Open in IMG/M
3300014969\|Ga0157376_10159517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2043	Open in IMG/M
3300015245\|Ga0137409_10748652	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	812	Open in IMG/M
3300015358\|Ga0134089_10495313	Not Available	535	Open in IMG/M
3300018081\|Ga0184625_10438909	Not Available	670	Open in IMG/M
3300018433\|Ga0066667_10083631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2065	Open in IMG/M
3300020581\|Ga0210399_11207999	Not Available	600	Open in IMG/M
3300021420\|Ga0210394_10636189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	937	Open in IMG/M
3300021478\|Ga0210402_11708260	Not Available	556	Open in IMG/M
3300021951\|Ga0222624_1102596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	947	Open in IMG/M
3300022756\|Ga0222622_10391427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	977	Open in IMG/M
3300025905\|Ga0207685_10098353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1246	Open in IMG/M
3300025906\|Ga0207699_11407595	Not Available	516	Open in IMG/M
3300025915\|Ga0207693_10983473	Not Available	645	Open in IMG/M
3300025926\|Ga0207659_10920396	Not Available	752	Open in IMG/M
3300025928\|Ga0207700_11671532	Not Available	562	Open in IMG/M
3300025929\|Ga0207664_11321557	Not Available	641	Open in IMG/M
3300026295\|Ga0209234_1019268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2580	Open in IMG/M
3300026300\|Ga0209027_1131073	Not Available	867	Open in IMG/M
3300026547\|Ga0209156_10288165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	745	Open in IMG/M
3300027725\|Ga0209178_1167302	Not Available	766	Open in IMG/M
3300027873\|Ga0209814_10245705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	776	Open in IMG/M
3300028718\|Ga0307307_10275300	Not Available	540	Open in IMG/M
3300028768\|Ga0307280_10197539	Not Available	710	Open in IMG/M
3300028782\|Ga0307306_10244484	Not Available	524	Open in IMG/M
3300028799\|Ga0307284_10452932	Not Available	525	Open in IMG/M
3300028819\|Ga0307296_10377958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	774	Open in IMG/M
3300028884\|Ga0307308_10534512	Not Available	562	Open in IMG/M
3300030990\|Ga0308178_1141178	Not Available	547	Open in IMG/M
3300031081\|Ga0308185_1051230	Not Available	532	Open in IMG/M
3300031095\|Ga0308184_1026486	Not Available	653	Open in IMG/M
3300031226\|Ga0307497_10611989	Not Available	552	Open in IMG/M
3300031424\|Ga0308179_1041753	Not Available	574	Open in IMG/M
3300031716\|Ga0310813_10401104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1180	Open in IMG/M
3300031720\|Ga0307469_11959439	Not Available	568	Open in IMG/M
3300031740\|Ga0307468_100324564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1133	Open in IMG/M
3300032180\|Ga0307471_102176908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	698	Open in IMG/M
3300032180\|Ga0307471_102186887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	697	Open in IMG/M
3300032770\|Ga0335085_10077122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4387	Open in IMG/M
3300032783\|Ga0335079_10077763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3772	Open in IMG/M
3300032828\|Ga0335080_10096906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3272	Open in IMG/M
3300032954\|Ga0335083_10054996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4178	Open in IMG/M
3300034447\|Ga0370544_20195	Not Available	540	Open in IMG/M
3300034644\|Ga0370548_120227	Not Available	548	Open in IMG/M
3300034681\|Ga0370546_001711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1881	Open in IMG/M
3300034681\|Ga0370546_055951	Not Available	619	Open in IMG/M
3300034681\|Ga0370546_075947	Not Available	557	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.44%
Host-Associated	Host-Associated	14.56%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.52%
Plants	Host-Associated → Plants	14.56%
Aquatic	Environmental → Aquatic	2.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.62%
Sediment	Environmental → Aquatic → Sediment	1.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.94%
Freshwater	Environmental → Aquatic → Freshwater	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.11%
Loam	Environmental → Terrestrial → Soil → Loam	15.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.53%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	10.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.68%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.71%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.91%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.97%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012373	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031081	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_159 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031095	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_158 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031424	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_150 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300034447	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_119 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0058897_109518461	3300004139	Forest Soil	VSAFTSRDAGAADRLALARLDDDGAPLPMTWPRAGDSHDRDAIGRGRIGQMAGRLAGTAAAASGEEAEQTPALLGAG*
Ga0066674_103134721	3300005166	Soil	MPAAGADRAAPGYRGGDIVNTFTSRDVEAADRLALARLDDDGAPPAVTCHSQDHYAIHRGHTGKVAGRLAETAAAASGEEAEQTPALLGAG*
Ga0066683_105277081	3300005172	Soil	VTSVSAFSSCDVEAADELALARLDDHGAPPPVTRPQAGDSHDRDAIGRGRIGQMAGRLAETAAAASGEEAEQTPAASGEEAEQTPA
Ga0066673_105143992	3300005175	Soil	MPAAGPDRAAPGYRGGDIVNTFTSRDVEAADRLALARLDDDGAPPAVTCHSHDHYAIRRGHTGKVAGRLAQTAAAASGEEAEQTPALLGAG*
Ga0066676_102274852	3300005186	Soil	VTTFTSRDAGAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVAGRLAETAAAASSEEAEQTPTLFGAG*
Ga0066675_103218952	3300005187	Soil	VEAAGPDRAAPGYRDGDIVSAFTSRDAGAADRLALARLDDDGAPPPVTWPRAGDSHDRDAIVRGRIGQMAGRLAQTAAAASGEEAEQTPALLGAG*
Ga0070682_1006302811	3300005337	Corn Rhizosphere	VSAFTSRDAGAADRLALARLDDDGAPLPMTWPRAGDSHDRDAIGRGRIGQMAGRLAKTAAAASGEEAEQTPALLGAG*
Ga0068868_1007070142	3300005338	Miscanthus Rhizosphere	AAPGYRDGDIVSAFTSRDAGAADRLALARLDDDGAPLPMTWPRAGDSHDRDAIGRGRIGQMAGRLAKTAAAASGEEAEQTPALLGAG*
Ga0070714_1006494602	3300005435	Agricultural Soil	MSAFTSCDAGAADRLALARLDNDGAPPPVTWPRAGHSHDRDAIGLGRIGQMAGRLAETAAAASGEEAEQTPALLGAG*
Ga0070714_1009698552	3300005435	Agricultural Soil	LALARLDDDGAPPPATWPQTRDSHDRDAIRRGRIGQVAASQAQTAAIASGEVSGQTPALPGAG*
Ga0070713_1015896522	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VSAFSSRGVEAAGELALARLDDDGAPATVTWPQISNSHGHHAIGRGHTCKPAGRLAETAAAASGEEAEQTPALLGAG*
Ga0070710_100716204	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSAFTSCDAGAADRLALARLGDDGAPPPVTWPRAGDSHDRDAIGRGRIGQMAGRLAGTAAAASGEEAEQTPALLGAG*
Ga0070711_1002460213	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	PGRTRAAPGYRDGDIMSAFTSCDAGAADRLALARLGDDGAPPPVTWPRAGDSHDRDAIGRGRIGQMAGRLAGTAAAASGEEAEQTPALLGAG*
Ga0066682_102227293	3300005450	Soil	MPAAGPDRAAPGYRGGDIVNTFTSRDVEAADRLALARLDDDGAPPAVTCHSQDHYAIHRGHTGKVAGRLAETAAAASGEEAEQTPALLGAG*
Ga0066682_103066232	3300005450	Soil	VTTFTSRDAGAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVAGRLAETAAAASGEEAEQTPTLFGAG*
Ga0070696_1002940262	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VEAGRCPLPAAGPDRAAPGYRDGDIVSAFTSRDAGAADRLALARLDDDGAPLPMTWPRAGDSHDRDAIGRGRIGQMAGRLAKTAAAASGEEAEQTPALLGAG*
Ga0066695_108873661	3300005553	Soil	TFTSRDAGAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVAGRLAETAAAASGEEAEQTPALLGAG*
Ga0068854_1011751172	3300005578	Corn Rhizosphere	MPAAGPDRAAPGYRDGDIVSAFTSRDAGAADRLALARLDDDGAPLPMTWPRAGDSHDRDAIGRGRIGQMAGRLAKTAAAASGEEAEQTPALLGAG*
Ga0070702_1008226882	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	AAPGYRDGDIVSAFTSRDAGAADRLALARLDDDGAPLPMTWPRAGDSHDRDAIGRGRIGQMAGRLAGTAAAASGEEAEQTPALLGAG*
Ga0070717_120987741	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VSAFSSRGVEAAGELAPARLDDDGAPAALTWPQISNNHGHHAIGRGHTGKPAGPLAETAAAATGEEAEQTPALPGAGQRPEPPG
Ga0066656_102530422	3300006034	Soil	VTTFTSRDAGAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVAGRLAETAAAASGEEAEQTPALLGAG*
Ga0075417_101853512	3300006049	Populus Rhizosphere	VNTFTSRDAGAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVAGRLAETAAAASGEEAEQTPTLFGAG*
Ga0079222_114100422	3300006755	Agricultural Soil	MPAAGPDRAAPGYRDGDIVSAFTSRDAGAADRLALARLDDDGAPPPVTWPRAGDSHDRDAIGRGRIGLMAGRLAETAAAASAEEAEQTPALLGAG*
Ga0066665_113471121	3300006796	Soil	VTTFTCRDAGAAGELALARLDDDGAPPPVPWPQARDSHDRDAIRRRIGQVAGRLAQTAAAASGEEAEQTPALLGAG*
Ga0066659_107446841	3300006797	Soil	SAFSSRGVEAAGELALARLDDDGAPAAVTWPQISDSHGHHAIGRGHTGKPAGRLAETPAAACGEEAEQTPALLGAG*
Ga0079221_103118693	3300006804	Agricultural Soil	MPAAGPDRAAPGYRDGDIVSAFTSRDAGAADRLALARLDDDGAPPPVTWPRAGDSHDRDAIGRGRIGQMAGRLAETAAAASAEEAEQTPALLGAG*
Ga0075433_107245563	3300006852	Populus Rhizosphere	VSAFTSRDVEATDRLALARLDDDGAPPPVTWPQTRDSHDRDAIRRGRIGQVAASQAQTAAIASGEVSGQTPALPGAG*
Ga0075425_1005073794	3300006854	Populus Rhizosphere	RDAGAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKLVGRLAETAAAASGEEAEQTPTLLGAG*
Ga0075426_100447856	3300006903	Populus Rhizosphere	AGAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVAGRLAETAAAASGEEAEQTSTLFGAG*
Ga0075426_101186154	3300006903	Populus Rhizosphere	VTTFTSRDAGAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVVGRLAETAAAASGEEAEQTPTLLGAG*
Ga0075424_1004505121	3300006904	Populus Rhizosphere	ADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVVGRLAETAAAASGEEAEQTPTLLGAG*
Ga0075424_1008713961	3300006904	Populus Rhizosphere	VNTFTSRDAGAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVAGRLAETAAAASGEEAEQTSTLFGAG*
Ga0075436_1005965042	3300006914	Populus Rhizosphere	DAGAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVAGRLAETAAAASGEEAEQTPTLFGAG*
Ga0075436_1015261982	3300006914	Populus Rhizosphere	DAGAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVVGRLAETAAAASGEEAEQTPTLLGAG*
Ga0075435_1002785454	3300007076	Populus Rhizosphere	LALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVVGRLAETAAAASGEEAEQTPTLLGAG*
Ga0066709_1003449083	3300009137	Grasslands Soil	VTSVSAFSSCDVEAADELALARLDDHGAPPPVTRPQAGDSHDRDAIGRGRIGQMAGRLAETAAAASGEEAEQTPAASGEEAEQTPALLGAG*
Ga0066709_1017746832	3300009137	Grasslands Soil	VNTFTSRDAGAAAGLALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVAGRLAETAAAASGEEAEQTPTLFGAG*
Ga0134070_104629312	3300010301	Grasslands Soil	VNTFTSRDVEAADRLALARLDDDGAPPAVTCHSQDHYAIHRGHTGKVAGRLAETAAAASGEEAEQTPALLGA
Ga0134084_102362382	3300010322	Grasslands Soil	VNTVTSRDAGAADELALARLDDDGAPPAVTCHSQDHYAIHRGHTGKVAGRLAETAAAASGEEAEQTPALLGAG*
Ga0134086_103957502	3300010323	Grasslands Soil	VTTFTSRDVEAADELALARLDDDGAPPAVTCHSQDHYAIHRGHTGKVAGRLAETAAAASGEEAEQTPALLGAG*
Ga0134086_104603591	3300010323	Grasslands Soil	VTSVSAFSSCDVEAADELALARLDDHGAPPPVTRPQAGDSHDRDAIGRGRIGQMAGRLAETAAAASGE
Ga0134065_100610013	3300010326	Grasslands Soil	VNTFTSRDAGAADELALARLDDDGAPPAVTCHSQDHYAIHRGHTGKVAGRLAETAAAASGEEAEQTPALLGAG*
Ga0134080_103490881	3300010333	Grasslands Soil	VNTFTSRDVEAADRLALARLDDDGAPPAVTCHSQDHYAIHRGHTGKVAGRLAETAAAASGEEAEQTPALLGAG*
Ga0134062_105304772	3300010337	Grasslands Soil	VNTFTSRDVEAAGELALARLDDDGAPPAVTWPQAGDSHDRDAIRGGGIGQVAASPAQTTAIAPGEVAGQTPALPGAG*
Ga0134128_102117083	3300010373	Terrestrial Soil	MSAFTSCDAGAADRLALARLGDDGAPPPVTWPRAGDSHDRDAIGRGRIGQMAGRLAKTAAAASGEEAEQTPALLGAG*
Ga0136449_1006384843	3300010379	Peatlands Soil	MRQDRGPQLHGSGDSMNAFTSCDLEAADRLALARFDDDGAPPAVTRPQAGDSHDRNAIHQDRIGQVAASQAGTVAIASGEVAEQTPALLGVG*
Ga0151490_13181422	3300011107	Soil	VSAFTSRDVEAADRLALARLDDDGAPPPVTWPQARDSHDRHAIRRGGIGQVAASPAQTAAIASGEVAEQTPALPGAI*
Ga0137364_105774213	3300012198	Vadose Zone Soil	VSAFSSRDVEAADRLALARLDDDGAPPPVTWPRAGDGHDRDAIRRGRTGQVAASPAQTPAIASGEEAEQTPALLGA
Ga0137370_104171751	3300012285	Vadose Zone Soil	VSAFTSRDAGAADRLALARLDDDGAPPPVTWPRAGDSHDRDAIVRGRIGQMAGRLAQTAAAASGEEAEQTPALLGAG*
Ga0137371_102895323	3300012356	Vadose Zone Soil	VTTFTSRDLEAADELALARLDDDGAPPAVTGHSQDHYAIRRGHTGKVAGRLAETAAAASGEEAEQTPTLLGAG*
Ga0137371_108684542	3300012356	Vadose Zone Soil	VTTFSSRDLEAADRLALARLDDDGAPPPVTWPQAGDSHDRDAIGRGRIGKPAGRLAQTAAAASGEEAEQTPALLGAG*
Ga0137385_107000572	3300012359	Vadose Zone Soil	MNVFTSRDLEAADRLALARLDDDGAPPAVTRPQAGDSHARDAIRRGRTGQVAAGQAETTAIASSEVAGQTPARLGVG*
Ga0134042_11534002	3300012373	Grasslands Soil	VNTFTSRDAGAADELALARLDDDGAPPAVTCHSQDHYAIHRGHTGKVAGRLAETAAAASGEEAEQTPTLFGAG*
Ga0134087_103509723	3300012977	Grasslands Soil	VNTFTSRDAGAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVAGRLAETAAAASGEEAEQTPALLGAG*
Ga0164305_106145462	3300012989	Soil	VSAFTSRDVEAANRLALARLGDDGAPPPVTWPRAGDSHDRDAIGRGRIGQMAGRLAKTAAAASGEEAEQTPALLGAG*
Ga0164305_107982262	3300012989	Soil	VSAFTSRDAGAADRLALARLDDDGAPLPMTWPQARDSHDRDAIRRGRIGQVAASPAQTAAIASGEVAGQAPALPGAG*
Ga0134078_101185521	3300014157	Grasslands Soil	DELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVAGRLAETAAAASGEEAEQTPALLGAG*
Ga0157376_101595174	3300014969	Miscanthus Rhizosphere	MSAFTSCDAGAADRLALARLDDDGAPLPMTWPRAGDSHDRDAIGRGRIGQMAGRLAKTAAAASGEEAEQTPALLGAG*
Ga0137409_107486522	3300015245	Vadose Zone Soil	RDVEAADKLALARLDDDGAPPALTWPQISDGQDHPAIRRGRTGRVVASSQAETAAAASGAEAEQTPALLGVG*
Ga0134089_104953131	3300015358	Grasslands Soil	VNTFTSRDAGAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVAGRLAETAAAASGEEAEQTPTLFGAD*
Ga0184625_104389092	3300018081	Groundwater Sediment	MPAAGPDRAAPGYRGGDIVNTFTSRDVEAADELALARLDDDGAPPAVTGHSQDHYAIRRGHTGKVAGRLAKTAAAASGEEPEQTPTLLGVG
Ga0066667_100836313	3300018433	Grasslands Soil	VTSVSAFSSCDVEAADELALARLDDHGAPPPVTRPQAGDSHDRDAIGRGRIGQMAGRLAETAAAASGEEAEQTPAASGEEAEQTPALLGAG
Ga0210399_112079992	3300020581	Soil	VSAFTSRDVEAADRLALARLDDDGAPPPVTWPQACDSHDRDAIRRGRIGQVAGRLAQTAAAASGEEAEQTPALPGAG
Ga0210394_106361892	3300021420	Soil	VSAFTSRDVEAADRLALARLDDDGAPPPVTWPQACDSHDRDAIRQGRIGQVAGRLAQTAAAASGEEAEQTPALPGAG
Ga0210402_117082602	3300021478	Soil	VSAFTSRDAGAADRLALARLDDDGAPLPMTWPRAGDSHDRDAIGRGRIGQMAGRLAKTAAAASGEEAEQTPALLGAG
Ga0222624_11025962	3300021951	Groundwater Sediment	MPAAGPDRTAPGYRGGDIVNTFTSRDVEAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVADRLAETAAAASGEEAEQTPTLLGVG
Ga0222622_103914274	3300022756	Groundwater Sediment	MPAAGPDRAAPGYRGGDIVNTFTSRDVEAADELALARLDDDGAPPAVTGHSQDHYAIRRGHTGKVAGRLAKTAAAASGEEAEQTPALLGAG
Ga0207685_100983534	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	VSAFTSRDAGAADRLALARLDDDGAPLPMTWPRAGDSHDRDAIGRGRIGQVAGRLAKTAAAASGEEAEQTPALLGAG
Ga0207699_114075951	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	EAAGGLALARLDDDGAPPPVTWPQAGDSHDRDAIRRGRIGQVAASPAQTAAATSGEVAEQTPALLGVG
Ga0207693_109834731	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LVEAGRCPLPAAGPDRAAPGYRDGDIVSAFTSRDAGAADRLALARLDDDGAPLPMTWPRAGDSHDRDAIGRGRIGQMAGRLAKTAAAASGEEAEQTPALLGAG
Ga0207659_109203962	3300025926	Miscanthus Rhizosphere	VEAGRCPLPAAGPDRAAPGYRDGDIVSAFTSRDAGAADRLALARLDDDGAPLPMTWPRAGDSHDRDAIGRGRIGQMAGRLAKTAAAASGEEAEQTPALLGAG
Ga0207700_116715321	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VSAFTSRDVEATDRLALARLDDDGAPPPVTWPQTRDSHDRDAIRRGRIGQVAASPAQAAAIASGEVSGQTPALPGAG
Ga0207664_113215571	3300025929	Agricultural Soil	PLCSWRCWCSGCRVSVEAGRCPLPVAGPDPAAPGYRGGDIVSAFTSRDVEATDRLALARLDDDGAPPPVTWPQARDSHDRDAIRRGRIGQVAASQAQTAAIASGEVSGQTPALPGAG
Ga0209234_10192683	3300026295	Grasslands Soil	VNTFTSRDVEAADRLALARLDDDGAPPAVTCHSQDHYAIHRGHTGKVAGRLAETAAAASGEEAEQTPALLGAG
Ga0209027_11310732	3300026300	Grasslands Soil	DAGAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVAGRLAETAAAASGEEAEQTPTLFGAG
Ga0209156_102881651	3300026547	Soil	VSAFTSRDAGAADRLALARLDDDGAPPPVTWPRAGDSHDRDAIVRGRIGQMAGRLAQTAAAASGEEAEQTPALLGAG
Ga0209178_11673022	3300027725	Agricultural Soil	MPAAGPDRAAPGYRDGDIVSAFTSRDAGAADRLALARLDDDGAPPPVTWPRAGDSHDRDAIGRGRIGQMAGRLAETAAAASAEEAEQTPALLGAG
Ga0209814_102457051	3300027873	Populus Rhizosphere	VNTFTSRDAGAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVAGRLAETAAAASGEEAEQTPTLFGAG
Ga0307307_102753001	3300028718	Soil	MPAAGPHRAVPGYRGGDIVTTFTSRDLEAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVASRLAKTAAAASGEEAEQTPTL
Ga0307280_101975392	3300028768	Soil	MPAAGPHRAVPGYRGGDIVATFTSRDLEAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVASRLAKTAAAASGEEAEQTPTLLGAG
Ga0307306_102444841	3300028782	Soil	AAGELALARLDDDGAPPTVSWPQAGDSHDRDAIRRGRIGKVAGRLAETAAAASGEEAEQTPTLLGAG
Ga0307284_104529321	3300028799	Soil	GGDIVTTFTSRDAGAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVAGRLAETAAAASGEEAEQTPTLLGAG
Ga0307296_103779582	3300028819	Soil	MPAAGPHRAVPGYRGGDIVATFTSRDLEAADELALARLDDDGAPPVVTCHSQDHYAIRRGHTGKVASRLAKTAAAASGEEAEQTPTLLGAG
Ga0307308_105345121	3300028884	Soil	MPAAGPDPAAPGYRGGDIVNAFSSRDVEAAGELALARLDDDGAPPTVSWPQAGDSHDRDAIRRGRIGKVAGRLAETAAAASGEEAEQTPTLLGAG
Ga0308178_11411782	3300030990	Soil	MPAAGPDRAAPGYRGGDIVNTFTSRDVEAADRLALARLDDDGAPPALTCHSQDHYAIHRGHTGKVAGRLAETAAAASGEEAEQTPALLGAG
Ga0308185_10512302	3300031081	Soil	MPAAGPDRAAPGYRGGDIVNTFTSRDVEAADELALARLDDDGAPPAVTGHSQDHYAIRRGHTAKVAGRLAKTAAAASGEEPEQTPTLLGVG
Ga0308184_10264862	3300031095	Soil	MPAAGPHRAVPGYRGGDIVTTFTSRDLEAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVASRLAKTAAAASGEEAEQTPTLLGAG
Ga0307497_106119891	3300031226	Soil	GPDQAPRGYQGGDIVNAFIPRDVEAADELALARLDDDGAPPALTWPQISDGQDHPAIRRGRTGRVVASSQAETAAAASGAEAEQTPALLGVG
Ga0308179_10417531	3300031424	Soil	MPAAGPDRAAPGYRGGDIVNTFTSRDVEAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVADRLAETAAAASGEEAEQTPTLLGVG
Ga0310813_104011043	3300031716	Soil	VSAFTSRDVEAADRLALARLDDDGAPPPVTWPQARDSHDRDAIRRGRIGQVAASPAQTAAIASGEVAEQAPALPGAV
Ga0307469_119594391	3300031720	Hardwood Forest Soil	VSAFTSRDVEATDRLALARLDDDGAPPPVTWPQTRDSHDRDAIRRGRIGQVAASPAQTAAIASGEVAGQTPALPGAG
Ga0307468_1003245643	3300031740	Hardwood Forest Soil	VNTFTSRDAGAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVAGRLAETAAAASGEEAEQTSTLFGAG
Ga0307471_1021769081	3300032180	Hardwood Forest Soil	MSAFTSCDAGAADRLALARLGDDGAPPPVTWPRAGDSHDRDAIGRGRIGQMAGRLAGTAAAA
Ga0307471_1021868871	3300032180	Hardwood Forest Soil	VTAFTSRDVEAADRLALARLDDDGAPPPVTWPQARDSHDRDAIRRGRIGQVAASPAQTAAIASGEVAGQTPALPGAG
Ga0335085_100771226	3300032770	Soil	VSAFSSRAAGAAGELALARLDDDGAPPLVTWPQAGDSHGHHATRRGHSGQVAGRLAETAAAASGEEAEQTPALLGTG
Ga0335079_100777636	3300032783	Soil	VDTFTSRDAGAAGEFALARLDDDGAPPPVTWSQAGDSHDRDAIRQGRIGQVAASQAKAPAIASGEAAGQTPALFGVG
Ga0335080_100969066	3300032828	Soil	VSAFSSRAAGAAGELALARLDDDGAPPLVTWPQVGDSHGHHATRRGHSGQVAGRLAETAAAASGEEAEQTPALLGTG
Ga0335083_100549968	3300032954	Soil	SAPIPGRDIVSAFSSRAAGAAGELALARLDDDGAPPLVTWPQAGDSHGHHATRRGHSGQVAGRLAETAAAASGEEAEQTPALLGTG
Ga0370544_20195_207_428	3300034447	Soil	VNAFTSRDLEAADRLALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVAGRLAETAAAASGEEAEQTPTLLGAG
Ga0370548_120227_203_424	3300034644	Soil	VATFTSRDLEAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVASRLAKTAAAASGEEAEQTPTLLGAG
Ga0370546_001711_202_423	3300034681	Soil	VNTFTSRDVEAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVADRLAETAAAASGEEAEQTPTLLGVG
Ga0370546_055951_200_421	3300034681	Soil	VNTFTSRDVEAADRLALARLDDDGAPPALTCHSQDHYAIHRGHTGKVAGRLAETAAAASGEEAEQTPALLGAG
Ga0370546_075947_200_421	3300034681	Soil	VTTFTSRDLEAADELALARLDDDGAPPAVTCHSQDHYAIRRGHTGKVASRLAKTAAAASGEEAEQTPTLLGAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099087

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences