Metagenome / Metatranscriptome Family F099046

Basic Information
Family ID	F099046
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	43 residues
Representative Sequence	TIDATERAAIEALFRAFEPYRYDRDAGPLRFVTLAQLAKAYSR
Number of Associated Samples	89
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.97 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (99.029 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (28.155 % of family members)
Environment Ontology (ENVO)	Unclassified (37.864 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.340 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56 1A10PFW1_116603052 2JGI25382J43887_101403321 3soilH2_102709632 4Ga0063356_1003024651 5Ga0062592_1002132132 6Ga0066683_106312871 7Ga0066680_101000601 8Ga0066673_103432211 9Ga0066690_100515751 10Ga0066671_106292061 11Ga0066676_102581052 12Ga0066676_106422031 13Ga0066675_111982281 14Ga0065715_101582342 15Ga0070691_106202071 16Ga0066686_104734761 17Ga0070706_1003225741 18Ga0070706_1003317551 19Ga0070697_1006787091 20Ga0070697_1019991632 21Ga0066704_101393062 22Ga0066700_102811452 23Ga0066699_102142843 24Ga0066699_103663561 25Ga0066703_102236181 26Ga0066691_104009602 27Ga0066706_100985801 28Ga0066706_102337202 29Ga0066706_114399371 30Ga0068870_105170651 31Ga0066653_105969141 32Ga0066659_101176461 33Ga0075425_1003102882 34Ga0079215_104134661 35Ga0075424_1023602081 36Ga0079216_115837071 37Ga0079218_108255502 38Ga0066710_1001236695 39Ga0066710_1006498501 40Ga0066710_1012889213 41Ga0099827_118890632 42Ga0066709_1022066862 43Ga0105164_101217611 44Ga0134088_102730402 45Ga0134111_102294031 46Ga0134126_130995412 47Ga0134124_127090721 48Ga0120163_10859061 49Ga0137399_105607192 50Ga0137399_109839011 51Ga0137380_113324472 52Ga0137381_107552762 53Ga0137376_103171501 54Ga0137377_100238871 55Ga0137377_106412772 56Ga0137367_101564851 57Ga0137367_107468521 58Ga0137368_100881693 59Ga0137397_100497301 60Ga0137396_104046541 61Ga0137410_103743431 62Ga0120106_10260463 63Ga0120158_102850281 64Ga0134075_100132982 65Ga0167657_10343822 66Ga0167650_11111581 67Ga0137409_100429411 68Ga0132258_131184931 69Ga0134112_103917251 70Ga0184610_10675301 71Ga0184604_103734222 72Ga0184632_101861952 73Ga0215015_104605542 74Ga0222625_16450601 75Ga0137417_13529882 76Ga0209642_102485483 77Ga0209824_100561721 78Ga0209824_102181872 79Ga0207699_108576413 80Ga0207670_108575732 81Ga0207704_103110862 82Ga0209238_12731822 83Ga0209471_11538641 84Ga0209473_10559941 85Ga0209803_11020391 86Ga0209160_11402181 87Ga0209157_10794521 88Ga0209056_100437255 89Ga0209056_101199313 90Ga0209376_11008371 91Ga0209161_101112902 92Ga0209474_100482175 93Ga0209011_11018731 94Ga0209590_103324012 95Ga0209590_106005912 96Ga0307301_101215621 97Ga0307305_100457771 98Ga0307292_100951431 99Ga0307304_102203811 100Ga0307473_106594772 101Ga0326597_104957451 102Ga0307471_1026125471 103Ga0364934_0425100_357_503
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56 1A10PFW1_116603052 2JGI25382J43887_101403321 3soilH2_102709632 4Ga0063356_1003024651 5Ga0062592_1002132132 6Ga0066683_106312871 7Ga0066680_101000601 8Ga0066671_106292061 9Ga0070706_1003225741 10Ga0070697_1006787091 11Ga0066704_101393062 12Ga0066699_103663561 13Ga0066706_102337202 14Ga0068870_105170651 15Ga0079215_104134661 16Ga0066710_1001236695 17Ga0066710_1006498501 18Ga0066710_1012889213 19Ga0105164_101217611 20Ga0137397_100497301 21Ga0137410_103743431 22Ga0120158_102850281 23Ga0209824_100561721 24Ga0207699_108576413 25Ga0307471_1026125471
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42. 1Ga0066676_102581052 2A10PFW1_116603052 3soilH2_102709632 4Ga0062592_1002132132 5Ga0066680_101000601 6Ga0066671_106292061 7Ga0066676_106422031 8Ga0066686_104734761 9Ga0070706_1003225741 10Ga0070697_1006787091 11Ga0070697_1019991632 12Ga0066699_102142843 13Ga0066706_102337202 14Ga0066706_114399371 15Ga0068870_105170651 16Ga0066659_101176461 17Ga0075424_1023602081 18Ga0079216_115837071 19Ga0066710_1001236695 20Ga0066710_1006498501 21Ga0099827_118890632 22Ga0105164_101217611 23Ga0134124_127090721 24Ga0120163_10859061 25Ga0137381_107552762 26Ga0137367_107468521 27Ga0137397_100497301 28Ga0137410_103743431 29Ga0120106_10260463 30Ga0120158_102850281 31Ga0167657_10343822 32Ga0132258_131184931 33Ga0134112_103917251 34Ga0184632_101861952 35Ga0215015_104605542 36Ga0209824_100561721 37Ga0209824_102181872 38Ga0207699_108576413 39Ga0209803_11020391 40Ga0209160_11402181 41Ga0209590_106005912 42Ga0307304_102203811 43Ga0326597_104957451 44Ga0307471_1026125471
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.03% β-sheet: 0.00% Coil/Unstructured: 61.97%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF01434	Peptidase_M41	63.11
PF02355	SecD_SecF	8.74
PF07549	Sec_GG	1.94
PF00004	AAA	0.97
PF13419	HAD_2	0.97
PF14690	zf-ISL3	0.97
PF03006	HlyIII	0.97
PF13518	HTH_28	0.97
PF04055	Radical_SAM	0.97
PF13683	rve_3	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	63.11
COG0341	Preprotein translocase subunit SecF	Intracellular trafficking, secretion, and vesicular transport [U]	10.68
COG0342	Preprotein translocase subunit SecD	Intracellular trafficking, secretion, and vesicular transport [U]	10.68
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	0.97

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	0.97 %
Unclassified	root	N/A	99.03 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	0.97 %
Unclassified	root	N/A	99.03 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.97 %
Unclassified	root	N/A	99.03 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.97 %
Unclassified	root	N/A	99.03 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.97 %
Unclassified	root	N/A	99.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.03 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.97 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %
Unclassified	root	N/A	99.03 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005177\|Ga0066690_10051575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2510	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.20%
Host-Associated	Host-Associated	6.80%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	6.80%
Plants	Host-Associated → Plants	6.80%
Terrestrial	Environmental → Terrestrial	86.41%

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	0.97%
Freshwater	Environmental → Aquatic → Freshwater	3.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.94%
Sediment	Environmental → Aquatic → Sediment	2.91%
Soil	Environmental → Terrestrial → Soil	85.44%

Habitat	Taxonomy	Distribution
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	2.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.91%
Loam	Environmental → Terrestrial → Soil → Loam	9.71%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.97%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.94%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.97%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	33.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.88%
Unchlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated	2.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.07%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.97%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.91%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	3.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	28.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.97%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.48%
Wastewater	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater	2.91%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M

Showing 1 to 10 of 89 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A10PFW1_116603052	3300001538	Permafrost	VSHPGTIVPAERAAIEALLGAFDALRYDRDAGPVRFVTPAQLAKAYRP*
JGI25382J43887_101403321	3300002908	Grasslands Soil	ATERAAIEALFEAFAPVRYDRDAGPVHFVTLAQLAKAYGR*
soilH2_102709632	3300003324	Sugarcane Root And Bulk Soil	ATIDATERAAIETLFAAFEPYRWDRQHGPLRFVTLSQLAKAIGP*
Ga0063356_1003024651	3300004463	Arabidopsis Thaliana Rhizosphere	RAMTLVSHPSTIDATERAAIEKLFQAFEPYRLDRDKGPLRFVTLSQLAKAYGP*
Ga0062592_1002132132	3300004480	Soil	GTIDTIERAAIEALFHAFDPYRYDRDSGPLRFVTLAQLAKAYGR*
Ga0066683_106312871	3300005172	Soil	RAVTIVSHPSTIDATERGAIAALFSALAPLRYDLDNGPVRFVTLAQLAQAWR*
Ga0066680_101000601	3300005174	Soil	PGTINAAEGAAINSLFDALATLRYDLDKGPLRFVTLAQLAQAWR*
Ga0066673_103432211	3300005175	Soil	IDATERAAITALFDAFAPLRYDRDAGPVRFVTLAQLAKAWR*
Ga0066690_100515751	3300005177	Soil	GTIDATERAAITELFDALASLRYDLDNGPLRFVTLAQLAQAWR*
Ga0066671_106292061	3300005184	Soil	IDATERGAIEALFTAFDPYRYDRDAGPLRFVTAAELAQAYR*
Ga0066676_102581052	3300005186	Soil	TIDATERAAIEALFRAFEPYRYDRDAGPLRFVTLAQLAKAYSR*
Ga0066676_106422031	3300005186	Soil	RRAITIVSHPGTIDATERAAITALFEALTPLRYDQDKGPVRFVTLAQLAQAWP*
Ga0066675_111982281	3300005187	Soil	IDASERAAIEALLGAFAPLRYDRDTGPLRFVTLAQLAKAYGL*
Ga0065715_101582342	3300005293	Miscanthus Rhizosphere	IDTIERAAIEALFHAFDPYRYDRDAGPLRFVTLAQLAKAYGR*
Ga0070691_106202071	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	TERAAIEALFRAFDPYRYDRDAGPLRFVTLAQLAKAYRP*
Ga0066686_104734761	3300005446	Soil	RAITIVSHPGTIDATECAAITALFNAFAPLRYDLDNGPVRFVTLAQLAQAWR*
Ga0070706_1003225741	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	TIDATERAAIEALFDAFGPLRYDADRGPVRFVTLAELAEAWR*
Ga0070706_1003317551	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	GTIDATERAAIEALFRAFDPYRYDRDAGPLRFVTLAQLAKAYSR*
Ga0070697_1006787091	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	SHPATIDAIERDAIESLFTAFAPLRYDADAGPVRFVTLAQLAQALK*
Ga0070697_1019991632	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LVSHPGTITATERAAIEALFQAFEPVRYDRDAGPVRFVTLAQLAKAYGR*
Ga0066704_101393062	3300005557	Soil	NERAAITALFDAFTPLRYDLDNGPLRFVTLAQLAQAWR*
Ga0066700_102811452	3300005559	Soil	ITIVSHPGTIDATERAAITALFDALAALRYDQDKGPVRFVTLAQLAQAWP*
Ga0066699_102142843	3300005561	Soil	SHPGTIGPAERAAIEALLGAFGPLRYDADAGPVRFVTLAQLATAWGR*
Ga0066699_103663561	3300005561	Soil	AIETLFAAFEPLRYDRGNGPLRFVTLAQLATAYSR*
Ga0066703_102236181	3300005568	Soil	ERAAIESLFAAFAPLRYDRDIGPVRFVTLAQLARAYG*
Ga0066691_104009602	3300005586	Soil	ERAAIEALFRAFDPYRYDRDAGPLRFVTLAQLAKAYAR*
Ga0066706_100985801	3300005598	Soil	TIDATERAAITELFDALASLRYDLDNGPLRFVTLAQLAQAWR*
Ga0066706_102337202	3300005598	Soil	TIDATERAAITELFDALASLRYDLDNGPLRFITLAQLAQAYPY*
Ga0066706_114399371	3300005598	Soil	TIVASERAAIETLFAAFEPLRYDRGNGPLRFVTLAQLAEAYSR*
Ga0068870_105170651	3300005840	Miscanthus Rhizosphere	PATVNATERAAIESLFRSFEPYRYDRDGGPLRFVTLAQLAQAFK*
Ga0066653_105969141	3300006791	Soil	AAIEALFLAFDPVRYDRDAGPVRFVTLAQLAKAYGR*
Ga0066659_101176461	3300006797	Soil	TLVSHPGTIVPAERAAIESLFSAFAPLRYDRDAGPVRFITLAQLATAYGP*
Ga0075425_1003102882	3300006854	Populus Rhizosphere	ERGAIEALFRAFDPYRYDRDAGPLRFVTLAQLAKAYSR*
Ga0079215_104134661	3300006894	Agricultural Soil	IEKLFQAFEPYRWDRDKGPLRFVTLSQLAKAYGP*
Ga0075424_1023602081	3300006904	Populus Rhizosphere	GTIDATERAAIETLFKAFFPLRYDQDSGPLRFVTLAQLAAAYSR*
Ga0079216_115837071	3300006918	Agricultural Soil	HPSTIDATERAAIEKLFQAFEPYRWDRDKGPLRFVTLSQLAKAYGP*
Ga0079218_108255502	3300007004	Agricultural Soil	EKLFQAFEPYRWDRDKGPLRYVTLSQLAKAYSSP*
Ga0066710_1001236695	3300009012	Grasslands Soil	ERAAIEALVKAFAPLRYDRDVGPLRFVTLAEVAKAYSK
Ga0066710_1006498501	3300009012	Grasslands Soil	IVSHPGTIDATERAAIETLLGAFAPVRYDRDTGPLRFVTLAQLAKAYGL
Ga0066710_1012889213	3300009012	Grasslands Soil	GAIEALLGAVGPLRYDADAGPVRFVTLAQLATAWAR
Ga0099827_118890632	3300009090	Vadose Zone Soil	IVSHPGTLDATEPAAITALFEALAPLRYDLDRGPVRFVTLAQLAQAWR*
Ga0066709_1022066862	3300009137	Grasslands Soil	DATERDAIEALFRAFEAYRYDRDAGALRFVTLAQLAKAYAR*
Ga0105164_101217611	3300009777	Wastewater	PGTIDAAERAAIETLLHAFDPFRYDQDRGPVRSITLRELAQVWK*
Ga0134088_102730402	3300010304	Grasslands Soil	IEALFRAFEPYRYDRDAGPLRFVTLAQLAKAYSR*
Ga0134111_102294031	3300010329	Grasslands Soil	SHPGTIDATERAAITELFDALASLRYDLDNGPLRFITLAQLAQAYPY*
Ga0134126_130995412	3300010396	Terrestrial Soil	RAAITALFDALAPLRYDRDAGPVRFVTLAQLAQAWR*
Ga0134124_127090721	3300010397	Terrestrial Soil	TLVSHPATIDATERAAIEKLFAAFEPYRWDRDMGPLRYVTLAQLAKAFGP*
Ga0120163_10859061	3300012003	Permafrost	PGTIDATERAAIAALFNALAPLRYDRDAGPVRFVTLAQLAQAWR*
Ga0137399_105607192	3300012203	Vadose Zone Soil	IDVTERAAITALFEALAPLRYDQDKGPLRFVTLAQLAQAWR*
Ga0137399_109839011	3300012203	Vadose Zone Soil	AIEALFRAFDPYRYDRDAGPLRFVTLAQLAKAYAR*
Ga0137380_113324472	3300012206	Vadose Zone Soil	TVVSHPGTNDATERAAIEALFRAFEPYRYDRDAGPLRFVTLAQLAKAYSR*
Ga0137381_107552762	3300012207	Vadose Zone Soil	VSHPGTIDATERAAITAIFNALAPFRYDLDQGPLRFVTLAQLAQAWR*
Ga0137376_103171501	3300012208	Vadose Zone Soil	IDATERAAITALFDAFAPLRYDRDAGPVRFVTLAQLAQAWR*
Ga0137377_100238871	3300012211	Vadose Zone Soil	HPGTIDATERAATEALFRAFEPYRYDRDAGPLRFVTLAQLAKAYSR*
Ga0137377_106412772	3300012211	Vadose Zone Soil	HPGTIDATERAAITALFEALAPLRYDQDKGPLRFVTLAQLAQAWP*
Ga0137367_101564851	3300012353	Vadose Zone Soil	ALTLVSHPGTIDATERAAIEALLGAFTPYRYDSDAGPLRFVTLAQLAKAYSR*
Ga0137367_107468521	3300012353	Vadose Zone Soil	TIDATERAAIETLFRAFEPLRYERDTGPLRFVTLAQLAKAYSP*
Ga0137368_100881693	3300012358	Vadose Zone Soil	TIDATERGAIEKLFAAFEPYRWDRDMGPLRYVTLAQLAKAYGP*
Ga0137397_100497301	3300012685	Vadose Zone Soil	RAAIEALFKAFGPLRYDADSGPVRFVTLAQVAQAFR*
Ga0137396_104046541	3300012918	Vadose Zone Soil	IDATERAAIEALFRAFDPYRYDRDAGPLRFVTLAQLAKAYAR*
Ga0137410_103743431	3300012944	Vadose Zone Soil	EVKVARDATERAAITALFNALAPLRYDLDKGPVRFVTLAQLAQAWR*
Ga0120106_10260463	3300013427	Permafrost	AIEALLGAFDPLRYDLDSGPVRFVTLAQLAKAYGP*
Ga0120158_102850281	3300013772	Permafrost	IEALLGAFDALRYDKDSGPVRFVTAAQLAKAYRQ*
Ga0134075_100132982	3300014154	Grasslands Soil	VSHPGTIDATERAAIAALFNALAPLRYDRDSGPLRFVTLAQLAQAWR*
Ga0167657_10343822	3300015079	Glacier Forefield Soil	GTIDATERAAIESLFQSFEPYRYDRDHGPVRFVTLAQLAQALK*
Ga0167650_11111581	3300015203	Glacier Forefield Soil	TIVPAERAAIEALLGAFDGLRYDKDAGPVRFVTAAQLAKAYRQ*
Ga0137409_100429411	3300015245	Vadose Zone Soil	GTIDATERAAITALFNALAPLRYDLDKGPVRFVTLAQLAQAWR*
Ga0132258_131184931	3300015371	Arabidopsis Rhizosphere	LTLVSHPATIDPIERDAIESLFKAFGPLRYEADSGPLRFVTLAQLAQAMK*
Ga0134112_103917251	3300017656	Grasslands Soil	RAITLVSHPGTIDDTERVAIESLFAAFEPLRYDRDEGPLRFVTLAQLARAYAP
Ga0184610_10675301	3300017997	Groundwater Sediment	ERAAIEKLFQAFEPYRWDRDKGPLRFVTLSQLAKAYNR
Ga0184604_103734222	3300018000	Groundwater Sediment	TESAAIAALFNALGPLRYDRDSGPVRFVTLAQLAQAWR
Ga0184632_101861952	3300018075	Groundwater Sediment	VSHPSTIDATERGAIETLFRAFDQYRYDRDAGPLRFVTLAQLARAYGP
Ga0215015_104605542	3300021046	Soil	SHPGTFDATERAAIEALFTAFAPLRYDDDAGPVRFVTLTQFAAAYK
Ga0222625_16450601	3300022195	Groundwater Sediment	APLALTIVSHPGTIDATERAAITALFNAFAPLRYDLDKGPVRFVTLAQLAQAWR
Ga0137417_13529882	3300024330	Vadose Zone Soil	VITVVSHPGTIVPAERAAIEALLGAFGPLRYDADAGPVRFVTLAQLAKAYNR
Ga0209642_102485483	3300025167	Soil	GAIEALFRAFDPFRYDRDAGPLRFVTLAQLAKAYAR
Ga0209824_100561721	3300025173	Wastewater	PGTIDATERAAIESLFRALEPYRFDRDRGPVRFITLAQLGKALK
Ga0209824_102181872	3300025173	Wastewater	IVSHPGTIDAAERAAIETLLHAFDPFRYDQDKGPLRFVTLQQLARAWK
Ga0207699_108576413	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	PAERAAIEALLMAFGPLRYDTDSGPVRFVTLAQLAKAYAH
Ga0207670_108575732	3300025936	Switchgrass Rhizosphere	TERAAIEALFKSFEPYRYDRDNGPLRFVTLAQLAQAFK
Ga0207704_103110862	3300025938	Miscanthus Rhizosphere	VSHPGTIDTIERAAIEALFHAFDPYRYDRDSGPLRFVTLAQLAKAYGR
Ga0209238_12731822	3300026301	Grasslands Soil	TIDATERAAITALFEALAPLRYDQDKGPLRFVTLAQLAQAWR
Ga0209471_11538641	3300026318	Soil	VPAERAAIESLFSAFAPLRYDRDAGPVRFITLAQLATAYGP
Ga0209473_10559941	3300026330	Soil	GPAERAAVEALLGAFGPLRYDADAGPVRFVTLAQLATAWGR
Ga0209803_11020391	3300026332	Soil	ATERAAIESLFAAFAPLRYDRDIGPVRFVTLAQLARAYG
Ga0209160_11402181	3300026532	Soil	VSHPGTIDANERAAITALFDAFRPLRYDLDNGPLRFVTLAQLAQAWR
Ga0209157_10794521	3300026537	Soil	RAAIESLFAAFAPLRYDRDIGPVRFVTLAQLARAYG
Ga0209056_100437255	3300026538	Soil	AITIVSHPGTIDATERAAITALFEALAPLRYDQDKGPVRFVTLAQLAQAWP
Ga0209056_101199313	3300026538	Soil	DATERAAIEALFRAFEPYRYDRDAGPLRFITLAQLAKAYSR
Ga0209376_11008371	3300026540	Soil	VVSHPGTIDATERAAIEALFRAFEPYRYDRDAGPLRFITLAQLAKAYSR
Ga0209161_101112902	3300026548	Soil	SHPGTIDATERAAITALFEALAPLRYDQDKGPVRFVTLAQLAQAWP
Ga0209474_100482175	3300026550	Soil	VSHPGTIVPAERAAIESLFSAFAPLRYDRDAGPVRFITLAQLATAYGP
Ga0209011_11018731	3300027678	Forest Soil	DATERAAIEALFRAFDPYRYDRDAGPLRFVTLAQLAKAYAR
Ga0209590_103324012	3300027882	Vadose Zone Soil	ITATERAAIEALFQAFDPVRYDRDAGPVHFVTLAQLAKAYGR
Ga0209590_106005912	3300027882	Vadose Zone Soil	HPGTIDATERAAITALFDAFSPLRYDRHAGPVRFVTLAQLAQAWR
Ga0307301_101215621	3300028719	Soil	IDATERAVITALFNAFAPLRHDLDNGPVRFVTLAQLAQAWR
Ga0307305_100457771	3300028807	Soil	AAITALFEAFAPLRYDRDAGPVRFVTLAQLAQAWR
Ga0307292_100951431	3300028811	Soil	AIEALFRAFEPYRYDRDAGPLRFVTLAQLAKAYSR
Ga0307304_102203811	3300028885	Soil	HPGTIDATERAAIEALFQSFEPYRYDRDNGPLRFVTLAQLERAFK
Ga0307473_106594772	3300031820	Hardwood Forest Soil	IDATERAAITALFDAFAPLRYDQDNGPLRFVTLAQLADAWR
Ga0326597_104957451	3300031965	Soil	STIGATERGAIETLFRAFEPLRYDRDAGPLRFVTLAQLAKAYAR
Ga0307471_1026125471	3300032180	Hardwood Forest Soil	TVVSHPGTIDATERAAIESLFAALEPLRYDRDSGPVRFVTLAQLARAYAR
Ga0364934_0425100_357_503	3300034178	Sediment	VSHPSTIDATERGAIETLFRAFDPYRYDRDAGPLRFVTLAQLAKAYSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099046

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences