Metagenome / Metatranscriptome Family F098962

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098962
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	49 residues
Representative Sequence	EECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARVKKEQQLGGRTS
Number of Associated Samples	87
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.83 %
% of genes near scaffold ends (potentially truncated)	94.17 %
% of genes from short scaffolds (< 2000 bps)	89.32 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.350 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.476 % of family members)
Environment Ontology (ENVO)	Unclassified (23.301 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.369 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.15% β-sheet: 0.00% Coil/Unstructured: 53.85%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF14534	DUF4440	6.80
PF00583	Acetyltransf_1	4.85
PF13432	TPR_16	1.94
PF00005	ABC_tran	1.94
PF07589	PEP-CTERM	1.94
PF04073	tRNA_edit	1.94
PF03466	LysR_substrate	1.94
PF00069	Pkinase	0.97
PF03734	YkuD	0.97
PF00905	Transpeptidase	0.97
PF07470	Glyco_hydro_88	0.97
PF00753	Lactamase_B	0.97
PF07244	POTRA	0.97
PF01266	DAO	0.97
PF13231	PMT_2	0.97
PF08447	PAS_3	0.97
PF02894	GFO_IDH_MocA_C	0.97
PF12867	DinB_2	0.97
PF01928	CYTH	0.97
PF13649	Methyltransf_25	0.97
PF13884	Peptidase_S74	0.97
PF01381	HTH_3	0.97
PF08450	SGL	0.97
PF08388	GIIM	0.97
PF13174	TPR_6	0.97
PF04972	BON	0.97
PF02371	Transposase_20	0.97
PF03544	TonB_C	0.97
PF13620	CarboxypepD_reg	0.97
PF00571	CBS	0.97
PF12680	SnoaL_2	0.97
PF00072	Response_reg	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.88
COG0673	Predicted dehydrogenase	General function prediction only [R]	0.97
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.97
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.97
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.97
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.97
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.97
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.35 %
Unclassified	root	N/A	11.65 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.35 %
Unclassified	root	N/A	11.65 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.35 %
Unclassified	root	N/A	11.65 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	62.14 %
Unclassified	root	N/A	11.65 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	3.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.97 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	28.16 %
Unclassified	root	N/A	11.65 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	10.68 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.18 %
Unclassified	root	N/A	11.65 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	6.80 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	3.88 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	2.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.97 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.18 %
Unclassified	root	N/A	11.65 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.80 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	3.88 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1.94 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.97 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.18 %
Unclassified	root	N/A	11.65 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	3.88 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1.94 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.94 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1.94 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.97 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.97 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.18 %
Unclassified	root	N/A	11.65 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	3.88 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1.94 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.94 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1.94 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.97 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.97 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.18 %
Unclassified	root	N/A	11.65 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	3.88 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1.94 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.94 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1.94 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.97 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.97 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10187684	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	829	Open in IMG/M
3300001593\|JGI12635J15846_10609678	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	634	Open in IMG/M
3300001593\|JGI12635J15846_10746277	All Organisms → cellular organisms → Bacteria → Acidobacteria	562	Open in IMG/M
3300002568\|C688J35102_120352748	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1008	Open in IMG/M
3300004119\|Ga0058887_1320714	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	538	Open in IMG/M
3300004156\|Ga0062589_101820152	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	611	Open in IMG/M
3300005435\|Ga0070714_100570866	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1084	Open in IMG/M
3300005435\|Ga0070714_102351274	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300005436\|Ga0070713_100275699	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1541	Open in IMG/M
3300005436\|Ga0070713_100721463	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	953	Open in IMG/M
3300005467\|Ga0070706_101995790	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300005532\|Ga0070739_10555620	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300005540\|Ga0066697_10355405	Not Available	853	Open in IMG/M
3300005542\|Ga0070732_10305410	All Organisms → cellular organisms → Bacteria → Acidobacteria	955	Open in IMG/M
3300005542\|Ga0070732_10448674	All Organisms → cellular organisms → Bacteria → Acidobacteria	780	Open in IMG/M
3300005558\|Ga0066698_10782575	Not Available	620	Open in IMG/M
3300005607\|Ga0070740_10337982	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300005614\|Ga0068856_102101176	All Organisms → cellular organisms → Bacteria → Acidobacteria	574	Open in IMG/M
3300005764\|Ga0066903_106518116	All Organisms → cellular organisms → Bacteria → Acidobacteria	608	Open in IMG/M
3300006028\|Ga0070717_10084795	All Organisms → cellular organisms → Bacteria	2665	Open in IMG/M
3300006028\|Ga0070717_11130533	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	713	Open in IMG/M
3300006028\|Ga0070717_12083800	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300006050\|Ga0075028_100837168	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300006086\|Ga0075019_10621103	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	679	Open in IMG/M
3300006800\|Ga0066660_10786492	Not Available	775	Open in IMG/M
3300006954\|Ga0079219_10676456	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	778	Open in IMG/M
3300009522\|Ga0116218_1394306	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	618	Open in IMG/M
3300010048\|Ga0126373_11569770	Not Available	723	Open in IMG/M
3300010361\|Ga0126378_10755801	All Organisms → cellular organisms → Bacteria → Acidobacteria	1083	Open in IMG/M
3300010366\|Ga0126379_13340998	Not Available	537	Open in IMG/M
3300010376\|Ga0126381_100441533	All Organisms → cellular organisms → Bacteria	1823	Open in IMG/M
3300010379\|Ga0136449_103243995	Not Available	627	Open in IMG/M
3300011120\|Ga0150983_12185077	All Organisms → cellular organisms → Bacteria → Acidobacteria	693	Open in IMG/M
3300011120\|Ga0150983_12599286	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	1792	Open in IMG/M
3300011271\|Ga0137393_10296878	All Organisms → cellular organisms → Bacteria → Acidobacteria	1375	Open in IMG/M
3300011271\|Ga0137393_10544315	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	996	Open in IMG/M
3300012351\|Ga0137386_10454170	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	923	Open in IMG/M
3300012917\|Ga0137395_10004179	All Organisms → cellular organisms → Bacteria	7292	Open in IMG/M
3300014501\|Ga0182024_10996679	Not Available	1000	Open in IMG/M
3300015265\|Ga0182005_1042895	All Organisms → cellular organisms → Bacteria	1230	Open in IMG/M
3300015373\|Ga0132257_104319067	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300017823\|Ga0187818_10142681	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300017924\|Ga0187820_1204298	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300017943\|Ga0187819_10642588	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300017955\|Ga0187817_10307320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1011	Open in IMG/M
3300017966\|Ga0187776_10919292	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300017975\|Ga0187782_11432284	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300018007\|Ga0187805_10529040	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300018088\|Ga0187771_10054730	All Organisms → cellular organisms → Bacteria	3117	Open in IMG/M
3300018088\|Ga0187771_10768133	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300018088\|Ga0187771_11619193	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	550	Open in IMG/M
3300018090\|Ga0187770_10641026	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	846	Open in IMG/M
3300018468\|Ga0066662_11811942	Not Available	639	Open in IMG/M
3300019273\|Ga0187794_1030872	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	651	Open in IMG/M
3300019887\|Ga0193729_1039166	All Organisms → cellular organisms → Bacteria → Acidobacteria	1966	Open in IMG/M
3300020580\|Ga0210403_10007286	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	9218	Open in IMG/M
3300020580\|Ga0210403_10074534	All Organisms → cellular organisms → Bacteria	2728	Open in IMG/M
3300020581\|Ga0210399_10285845	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	1376	Open in IMG/M
3300020581\|Ga0210399_10547311	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	960	Open in IMG/M
3300020583\|Ga0210401_10009619	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	9498	Open in IMG/M
3300021168\|Ga0210406_10030738	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4857	Open in IMG/M
3300021170\|Ga0210400_10025946	All Organisms → cellular organisms → Bacteria → Acidobacteria	4546	Open in IMG/M
3300021170\|Ga0210400_10039750	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3650	Open in IMG/M
3300021171\|Ga0210405_10226989	All Organisms → cellular organisms → Bacteria	1479	Open in IMG/M
3300021411\|Ga0193709_1045670	All Organisms → cellular organisms → Bacteria → Acidobacteria	1028	Open in IMG/M
3300021432\|Ga0210384_10603065	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300021433\|Ga0210391_10994266	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300021476\|Ga0187846_10205290	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	825	Open in IMG/M
3300022531\|Ga0242660_1092180	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	730	Open in IMG/M
3300022532\|Ga0242655_10245105	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	565	Open in IMG/M
3300022557\|Ga0212123_10592044	All Organisms → cellular organisms → Bacteria → Acidobacteria	701	Open in IMG/M
3300022717\|Ga0242661_1109780	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	585	Open in IMG/M
3300022722\|Ga0242657_1067253	All Organisms → cellular organisms → Bacteria → Acidobacteria	823	Open in IMG/M
3300024331\|Ga0247668_1062959	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	750	Open in IMG/M
3300025929\|Ga0207664_11152721	All Organisms → cellular organisms → Bacteria → Acidobacteria	692	Open in IMG/M
3300026328\|Ga0209802_1103321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1278	Open in IMG/M
3300026538\|Ga0209056_10555578	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300027591\|Ga0209733_1057878	Not Available	1019	Open in IMG/M
3300027645\|Ga0209117_1059143	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	1115	Open in IMG/M
3300027706\|Ga0209581_1216067	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300027898\|Ga0209067_10433027	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	740	Open in IMG/M
3300027903\|Ga0209488_10159096	All Organisms → cellular organisms → Bacteria → Acidobacteria	1706	Open in IMG/M
3300027903\|Ga0209488_10629003	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	776	Open in IMG/M
3300027905\|Ga0209415_10102756	All Organisms → cellular organisms → Bacteria → Acidobacteria	3124	Open in IMG/M
3300027905\|Ga0209415_10199296	All Organisms → cellular organisms → Bacteria → Acidobacteria	1894	Open in IMG/M
3300027911\|Ga0209698_10475080	All Organisms → cellular organisms → Bacteria → Acidobacteria	970	Open in IMG/M
3300029636\|Ga0222749_10525298	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300030738\|Ga0265462_10672731	Not Available	809	Open in IMG/M
3300031715\|Ga0307476_10167295	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1586	Open in IMG/M
3300031718\|Ga0307474_10360891	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1126	Open in IMG/M
3300031720\|Ga0307469_11501713	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300031753\|Ga0307477_10534297	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	795	Open in IMG/M
3300031754\|Ga0307475_10198710	Not Available	1602	Open in IMG/M
3300031820\|Ga0307473_10738928	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	695	Open in IMG/M
3300031823\|Ga0307478_10195610	All Organisms → cellular organisms → Bacteria	1625	Open in IMG/M
3300031823\|Ga0307478_10992857	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	702	Open in IMG/M
3300031962\|Ga0307479_10923128	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300032770\|Ga0335085_12007694	Not Available	587	Open in IMG/M
3300032783\|Ga0335079_12245989	All Organisms → cellular organisms → Bacteria → Acidobacteria	519	Open in IMG/M
3300032828\|Ga0335080_11619588	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300032829\|Ga0335070_10095252	All Organisms → cellular organisms → Bacteria	3128	Open in IMG/M
3300032955\|Ga0335076_10264364	All Organisms → cellular organisms → Bacteria → Acidobacteria	1613	Open in IMG/M
3300033158\|Ga0335077_11975080	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.09%
Host-Associated	Host-Associated	2.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.38%
Aquatic	Environmental → Aquatic	9.71%
Plants	Host-Associated → Plants	2.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.41%
Freshwater	Environmental → Aquatic → Freshwater	4.85%
Sediment	Environmental → Aquatic → Sediment	3.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.94%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.97%
Cave	Environmental → Terrestrial → Cave	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.34%
Loam	Environmental → Terrestrial → Soil → Loam	17.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.59%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.88%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.97%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.97%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.36%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.94%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.97%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.48%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.85%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.94%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.97%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.97%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.97%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004119	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF210 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005607	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019273	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027706	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_101876841	3300001356	Peatlands Soil	IQLIDWLVGRLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARAKKEQQLGGRTI*
JGI12635J15846_106096782	3300001593	Forest Soil	VLPLQTDDLLKDYAKDARNSMASAIEQLSLARAKKEQQLGGRTS*
JGI12635J15846_107462771	3300001593	Forest Soil	LPLQTDDLLKDYAKNARNSMASAIEQLSLARAKKEQQLGSRTS*
C688J35102_1203527482	3300002568	Soil	VLPLETDDLLKQFAQDARNSMASAIEQLSLARVKKQQQLGEPAS*
Ga0058887_13207141	3300004119	Forest Soil	QLIDWLVGRLEECLGEVLPLQTDDLLKDHATDARNSMASAIEQLSLARVKKEQQLGGGTS
Ga0062589_1018201521	3300004156	Soil	GRLEECQGEVLPLETDDLLKQFAKDARNSMASAIEQLRLARVKKQQQLGERTS*
Ga0070714_1005708663	3300005435	Agricultural Soil	DWLVGRLEECQGEVLPLETDDLLKQFAKDARNSMASAIEQLSLARVKKQQQLGEPAS*
Ga0070714_1023512741	3300005435	Agricultural Soil	RLEECLGEVLPLQTDDLLKDYAKDAQKSMASAIEQLTLARAVKQQQLGGKTS*
Ga0070713_1002756994	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	CLGEVLPLQTEDLLKDYANDARNCMASAIEQLSLARAKRQQQLGGLSS*
Ga0070713_1007214632	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	EECQGEVLPLETDDLLKQFAKDARNSMASAIEQLSLARVKKQQQLGEPAS*
Ga0070706_1019957901	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	QTDDLLKDYAKDARNSMASAIEQLSLARAKKEQQLGGHTS*
Ga0070739_105556201	3300005532	Surface Soil	EECLGEVLPLQTDDLLRDHAKEAGNSMASAIEQLKLARLKKEQETE*
Ga0066697_103554051	3300005540	Soil	RLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARVKKEQQLGGRTS*
Ga0070732_103054101	3300005542	Surface Soil	LPLQTDDLLKDYATDARNSVASAIEQLSHARAKKEQQLGGRTS*
Ga0070732_104486741	3300005542	Surface Soil	IQLIDWLVGRLEECLGEVLPLQTDDLLKDYATDARNSVASAIEQLSLARAKKEHQLGGRTS*
Ga0066698_107825751	3300005558	Soil	QTDDLLKDYAKDARNSMASAIEQLSLARVKKEQQLGGRTS*
Ga0070740_103379821	3300005607	Surface Soil	TIQLIDLLVARLEECLGEVLPLETDDLLRDNARNASRDMASAIEQLRLARSKKEQQPGT*
Ga0068856_1021011761	3300005614	Corn Rhizosphere	QLIDWLVGRLEECQGEVLPLETDDLLKQFAKDARNSMASAIEQLSLARVKKQQQLGEPAS
Ga0066903_1065181161	3300005764	Tropical Forest Soil	EECLGEVLPLQTDDLLKDYAKDAQKSMASAIEQLSLARAVKKQQLGDRTG*
Ga0070717_100847955	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LPLQTDDLLKDYAKDARNSMASAIEQLSLARAKKEQQLGGRTS*
Ga0070717_111305331	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LVGRLEECLGEVLPLQTEDLLKDYANDARNCMASAIEQLSLARAKRQQQLGGLSS*
Ga0070717_120838002	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VGRLEECQGEVLPLETDDLLKQFAKDARNSMASAIEQLSLARVKKQQQLGEPAS*
Ga0075028_1008371682	3300006050	Watersheds	DLLKDYAKDARNSMASAIEQLSLARAKKEQQLGGRTS*
Ga0075019_106211031	3300006086	Watersheds	EVLPLQTDDLLKDYAKDARNSMASAIEQLSLARAKKEQQLGGRTS*
Ga0066660_107864922	3300006800	Soil	LKQFAKDARNSMASAIEQLSLARVKKQQQLGEPAS*
Ga0079219_106764561	3300006954	Agricultural Soil	WLVGRLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARVKKEQQLGGRTS*
Ga0116218_13943061	3300009522	Peatlands Soil	IDWLVGRLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARAKKEQQLGGRTI*
Ga0126373_115697702	3300010048	Tropical Forest Soil	QTDDLLKDYAKDARNSMASAIEQLSLARAKKELQIGDRTS*
Ga0126378_107558012	3300010361	Tropical Forest Soil	CLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARAKKELQIGDRTS*
Ga0126379_133409981	3300010366	Tropical Forest Soil	LLKDYAKDARNSMASAIEQLSLARAKKELQIGDRTS*
Ga0126381_1004415333	3300010376	Tropical Forest Soil	EECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARAKKELQIGDRTS*
Ga0136449_1032439951	3300010379	Peatlands Soil	LPLQTDDLLKDFAKDARNSMASAIEQLSLARAKKEQQLGGRTS*
Ga0150983_121850771	3300011120	Forest Soil	TMQLIDWLVGRLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARVKKEQQLGGGTS*
Ga0150983_125992861	3300011120	Forest Soil	LIDWLVGRLEECLGEVLPLQTDDLLKDHATDARNSMASAIEQLSLARVKKEQQLGGGTS*
Ga0137393_102968781	3300011271	Vadose Zone Soil	IDWLVGRLEECLGEVLPLQTDDLLKDYAKDARNSMATAIEQLTLARAKKEEQLGGRTS*
Ga0137393_105443153	3300011271	Vadose Zone Soil	EECLGEVLPLQTDDLLKDYAKDARNSMATAIEQLSLARAKKEQQLGGRT*
Ga0137386_104541701	3300012351	Vadose Zone Soil	DLLKDYAKNARNSMASAIEQLSLARAKKEQQLGGRTS*
Ga0137395_100041791	3300012917	Vadose Zone Soil	LLKDYAKDARNSMASAIEQLSLARAKKEQQLGGRTS*
Ga0182024_109966791	3300014501	Permafrost	QTDDLLKDYAKDARNSMASAIEQLSLARAKKEQQLGGRTS*
Ga0182005_10428951	3300015265	Rhizosphere	VLPLETDDLLKPFAQNARNSMASAIEQLSLARAKKEQQLGEPTS*
Ga0132257_1043190671	3300015373	Arabidopsis Rhizosphere	TDDLLKDYAKDAQKSMASAIEQLTLARAVKQQQLGGKTS*
Ga0187818_101426811	3300017823	Freshwater Sediment	LEECLGEVLPLQTDDLLKNYAKDARNNMASAIEQLNLARVKKEHQLGG
Ga0187820_12042981	3300017924	Freshwater Sediment	LEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARVKKEQQLGGRTS
Ga0187819_106425882	3300017943	Freshwater Sediment	LEECLGEVLPLQTDDLLKDYAKYAPNSMASAIEQLSLARVKKEQQLGGRTS
Ga0187817_103073201	3300017955	Freshwater Sediment	VGRLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEKLSLARVKKEQQLGGRTS
Ga0187776_109192921	3300017966	Tropical Peatland	EVLPLPTDDLLKDHANDARKSMASAIDQLSLARAKKEQHLGRRTN
Ga0187782_114322841	3300017975	Tropical Peatland	EECLGEVLPLQTDDLLKDYAKDAHNNMASAIEQLNLARAKKERQLGGRTS
Ga0187805_105290402	3300018007	Freshwater Sediment	VGRLEECLGEVLPLQTDDLLKGYAKDAHNSMASALQQLSLARAKKEQQLGRTS
Ga0187771_100547304	3300018088	Tropical Peatland	LVGRLEECLGEVLPLQTDDLLKDYASDARDSMASAIKQLSLARAKKEQLLGGRTS
Ga0187771_107681332	3300018088	Tropical Peatland	LVGRLEECLGEVLPLQTDDLLKDYASDARDSMASAIKQLSLARAKKEQHLGGRTN
Ga0187771_116191932	3300018088	Tropical Peatland	GRLEGCLGEVLPLQTDDLLKDYAKDARNSMASAIEQLRLARAKKEEQLGGPTG
Ga0187770_106410262	3300018090	Tropical Peatland	GQLEECLGEVLPLQTDDLLKHYANDARNSMASAIEQLSLARAKKEQHLGGRTN
Ga0066662_118119421	3300018468	Grasslands Soil	TDDLLKDYAKDARNSMASAIEQLSLARVKKEQQLGGRTS
Ga0187794_10308721	3300019273	Peatland	LVGQLEECLGEALLLQTDDLLKEYAKDARNSIASAIEQLRLARAKKEQQLRG
Ga0193729_10391661	3300019887	Soil	QTDDLLKDYAKDARNSMASAIEQLSFARAKKEQQLGGRTS
Ga0210403_100072866	3300020580	Soil	MQLIDWLVGRLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARVKKEQQLGGGT
Ga0210403_100745341	3300020580	Soil	WLVGRLEECLGEVLPLQTDDLLKDYARDARNYMASAIEQLSLARAKKEQQLGGRTS
Ga0210399_102858451	3300020581	Soil	LKDYAKDARNSMASAIEQLSLARAKKEQQLGGRTS
Ga0210399_105473112	3300020581	Soil	VLPLQTDDLLKDYAKDARNSMASAIEQLSLARGKKEQQLGGRTS
Ga0210401_100096195	3300020583	Soil	MQLIDWLVGRLEECLGEVLPLQTDDLLKDHATDARNSMASAIEQLSLARVKKEQQLGGGT
Ga0210406_100307381	3300021168	Soil	PLQTDDLLKDYARDARNSMASAIEQLSLARAKKEQQLGGRTS
Ga0210400_100259463	3300021170	Soil	LEECLGEVLPLQTDDLLKDYAKNARNSMASAIEQLSLGRAKKEQQ
Ga0210400_100397507	3300021170	Soil	QLIDWLVGRLEECLGEVLPLQTDDLLKDYAKNARNSMASAIGQLSLGRAKKEQQLGGRTS
Ga0210405_102269893	3300021171	Soil	LIDWLVGRLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLNLARAKKEQQLGGRPS
Ga0193709_10456703	3300021411	Soil	IDWLVGRLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSFARAKKEQQLGGRTS
Ga0210384_106030652	3300021432	Soil	LKSHAKDAQNSIAAAIEQLSAAKAKKEQQLGGYTG
Ga0210391_109942662	3300021433	Soil	GEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARAKKEQQLGGRTS
Ga0187846_102052901	3300021476	Biofilm	QLIDWLVGRLEECLGEVLPLETDDLLKGYAKEARNSMASALEQLNLARAKKEQQLGGRTG
Ga0242660_10921801	3300022531	Soil	QLIDWLVGRLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARVKKEQQLGGRTS
Ga0242655_102451051	3300022532	Soil	IDWLVGRLEECLGEVLPLQTDDLLKDHATDARNSMASAIEQLSLARVKKEQQLGGGTS
Ga0212123_105920441	3300022557	Iron-Sulfur Acid Spring	VLPLQTEDLLKDYAKDARNSMALAIEQLSLARAKKEQQLGGRTS
Ga0242661_11097801	3300022717	Soil	LEECLGEVLPLQTDDLLKDHATDARNSMASAIEQLSLARVKKEQQLGGGTS
Ga0242657_10672532	3300022722	Soil	GRLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLNRARAKKERQLGGRTS
Ga0247668_10629591	3300024331	Soil	LEECLGEVLPLQTDDLLKDYAKDAQKSMASAIEQLTLARAVKQQQLGGKTS
Ga0207664_111527211	3300025929	Agricultural Soil	DWLVGRLEECQGEVLPLETDDLLKQFAKDARNSMASAIEQLSLARVKKQQQLGEPAS
Ga0209802_11033213	3300026328	Soil	PLQTDDLLKDYAKDARNSMASAIEQLSLARVKKEQQLGGRTS
Ga0209056_105555782	3300026538	Soil	LKDYAKDARNSMASAIEQLSLARVKKEQQLGGRTS
Ga0209733_10578782	3300027591	Forest Soil	DDLLKDYAKDARNSMASAIEQLSLARAKKEQQLGGRTS
Ga0209117_10591432	3300027645	Forest Soil	IQLIDWLVGRLEECLGEVLPLQTDDLLKDYAKDPRNSMASAIEQLSLARTKKEQQLGGRT
Ga0209581_12160672	3300027706	Surface Soil	TIQLIDLLVARLEECLGEVLPLETDDLLRDNARNASRDMASAIEQLRLARSKKEQQPGT
Ga0209067_104330271	3300027898	Watersheds	IQLIDWLVGRLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARIKKEQQLGGRT
Ga0209488_101590961	3300027903	Vadose Zone Soil	PLQTDDLLKDYAKDARNSMASAIEQLSLGRAKKEQQLGGRTS
Ga0209488_106290031	3300027903	Vadose Zone Soil	PLQTEDLLKDYAKDARNGMASAIEQLSLARAKKEQQLGGRTS
Ga0209415_101027564	3300027905	Peatlands Soil	IDWLVGRLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARAKKEQQLGGRTI
Ga0209415_101992963	3300027905	Peatlands Soil	IDWLVGRLEECLGEVLPLQTDDLLKEYAKDARNNMASAIEQLSLARAKKEQQLGGRTS
Ga0209698_104750803	3300027911	Watersheds	EECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARVKKEQQLGGRTS
Ga0222749_105252982	3300029636	Soil	EECLGEVLPLQTDDLLKSHAKDAQNSIAAAIEQLSAAKAKKEQQLGGYTG
Ga0265462_106727312	3300030738	Soil	PLQTDDLLTDYAKDARDSMASAIDQLRLARAKKEQQVGGRTS
Ga0307476_101672951	3300031715	Hardwood Forest Soil	LQTDDLLKDYATDARNSMASAIEQLSLARVKKEQQLGGGTS
Ga0307474_103608911	3300031718	Hardwood Forest Soil	PLQTDDLLKDYAKSARNSVASAVEQLSLARAKKEQQLGGRIS
Ga0307469_115017131	3300031720	Hardwood Forest Soil	TDDLLKDYAKDARNSMASAIEQLSLARVKKEQQLGGGTS
Ga0307477_105342972	3300031753	Hardwood Forest Soil	RLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARAKKEQQLGGRTN
Ga0307475_101987101	3300031754	Hardwood Forest Soil	DLLKDYARDARNSMASAIEQLRLARAKKEKQLEGRTS
Ga0307473_107389281	3300031820	Hardwood Forest Soil	RLEECLGEVLPLQTDDLLKDYAKNARNSMASAIEQLSLARVKKEEQLGGRTS
Ga0307478_101956101	3300031823	Hardwood Forest Soil	DWLVGRLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARVKKEQQLGGRTS
Ga0307478_109928571	3300031823	Hardwood Forest Soil	QLIDWLVGRLEECLGEVLPLQTDDLLKDHARDARNSMASAIEQLSLARAKKEQQLGGRTR
Ga0307479_109231281	3300031962	Hardwood Forest Soil	IDWLVGRLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARVKKEQQLGGRTS
Ga0335085_120076941	3300032770	Soil	CLGEVLPLQTDDLLKEYAKDARNSMASAIEQLSLARVKKEQQLGGRTS
Ga0335079_122459891	3300032783	Soil	CLGEVLPLQTDELLRDYAKDARNGMASAIEQLRLARAKKEQQLGGRTS
Ga0335080_116195882	3300032828	Soil	LGEVLPLQTEDLLKDYAREARDSMASSIAQLKLARAKKVQQLGGRTS
Ga0335070_100952521	3300032829	Soil	TDDLLKDYAKDAQNSMSSAIEQLNMARAVKKQQLGGQNG
Ga0335076_102643641	3300032955	Soil	LGEVLPLQTDDLLKGYAKDAHNSIASAVEQLGVARAKKEQQLGGRTS
Ga0335077_119750801	3300033158	Soil	GRLEECLGEVLPLQTDDLLKDYAKDARNSVAFAVEQLKLARVKKEQELGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098962

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences