Metagenome / Metatranscriptome Family F098934

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098934
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	101 residues
Representative Sequence	MWINITDDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIDEQRIRYDNGSRVHEWDEHWTCGL
Number of Associated Samples	70
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater (52.427 % of family members)
Environment Ontology (ENVO)	Unclassified (52.427 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (76.699 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140. 1B570J29576_1024371 2B570J40625_1000606994 3B570J40625_1001689353 4B570J40625_1005082523 5Ga0007787_103745142 6Ga0074472_103785713 7Ga0070749_102143492 8Ga0070749_102667424 9Ga0070749_105774942 10Ga0070749_107578501 11Ga0102978_13065543 12Ga0070745_13590141 13Ga0099851_10605393 14Ga0099848_10999215 15Ga0102861_11940601 16Ga0070751_11558681 17Ga0102862_10201202 18Ga0114340_11462093 19Ga0114343_11869511 20Ga0114363_10815453 21Ga0114876_10756283 22Ga0114876_11636851 23Ga0114876_12193511 24Ga0114880_10655292 25Ga0102860_10052672 26Ga0129333_100723851 27Ga0129333_101126224 28Ga0129333_104275261 29Ga0129333_115038943 30Ga0129336_100645741 31Ga0151517_16118 32Ga0181363_10214535 33Ga0181363_10384081 34Ga0181363_10670262 35Ga0181352_10149835 36Ga0181352_10682483 37Ga0211729_112821562 38Ga0208050_10022354 39Ga0208050_10149533 40Ga0208593_10036113 41Ga0208593_10359692 42Ga0181353_11081212 43Ga0196905_10030751 44Ga0255223_10065164 45Ga0255223_10365851 46Ga0255224_10101884 47Ga0255228_10326391 48Ga0255231_10049292 49Ga0255232_10016761 50Ga0255232_11324872 51Ga0256302_10442433 52Ga0208644_11645861 53Ga0208644_11746224 54Ga0256298_10026862 55Ga0256297_10213532 56Ga0255074_10004034 57Ga0255074_10067874 58Ga0255074_10132643 59Ga0255074_10242342 60Ga0255074_10492831 61Ga0255090_10125142 62Ga0255090_10525042 63Ga0255098_10022373 64Ga0255098_10029995 65Ga0255098_10075142 66Ga0255067_10502542 67Ga0255089_10040165 68Ga0255069_10100083 69Ga0255073_10227481 70Ga0255092_10266541 71Ga0255076_10272073 72Ga0255065_10075804 73Ga0255100_10035746 74Ga0255100_10365923 75Ga0255078_10702501 76Ga0208802_10617842 77Ga0255096_10335651 78Ga0255096_10417121 79Ga0255087_10036806 80Ga0255087_10045196 81Ga0255091_10237751 82Ga0255091_10730141 83Ga0255084_10851702 84Ga0255095_10355901 85Ga0255097_10374223 86Ga0255093_11033001 87Ga0255094_10264851 88Ga0255077_10223041 89Ga0255085_10031541 90Ga0255085_10946871 91Ga0255068_10006615 92Ga0255088_10110081 93Ga0255079_10008601 94Ga0255079_10316511 95Ga0255079_10607882 96Ga0209033_12043482 97Ga0255226_10186452 98Ga0255227_10229012 99Ga0255227_10352633 100Ga0256301_10704472 101Ga0255233_11235331 102Ga0316621_109360523 103Ga0348337_195127_1_267
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140. 1B570J29576_1024371 2Ga0007787_103745142 3Ga0074472_103785713 4Ga0070749_102143492 5Ga0099851_10605393 6Ga0129333_100723851 7Ga0181363_10214535
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140. 1B570J29576_1024371 2Ga0007787_103745142 3Ga0074472_103785713 4Ga0070749_102143492 5Ga0099851_10605393 6Ga0129333_100723851 7Ga0181363_10214535
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.02% β-sheet: 42.55% Coil/Unstructured: 40.43%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF08299	Bac_DnaA_C	36.89
PF13482	RNase_H_2	6.80
PF08800	VirE_N	4.85
PF08279	HTH_11	2.91
PF05105	Phage_holin_4_1	2.91
PF00145	DNA_methylase	1.94
PF13392	HNH_3	1.94
PF04860	Phage_portal	0.97

Showing 1 to 8 of 8 entries

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COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	36.89
COG4824	Phage-related holin (Lysis protein)	Mobilome: prophages, transposons [X]	2.91
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	1.94

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
No data available in table

Environmental Properties

Associated Habitat Types

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Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.03%
Terrestrial	Environmental → Terrestrial	0.97%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	77.67%
Marine	Environmental → Aquatic → Marine	20.39%
Sediment	Environmental → Aquatic → Sediment	0.97%
Soil	Environmental → Terrestrial → Soil	0.97%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	16.50%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.88%
Lake	Environmental → Aquatic → Freshwater → Lake	9.71%
Lentic	Environmental → Aquatic → Freshwater → Lentic	15.53%
River	Environmental → Aquatic → Freshwater → River	52.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.97%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.97%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	7.77%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	3.88%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	52.43%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	16.50%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	9.71%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	7.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	11.65%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	3.88%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	52.43%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	7.77%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.94%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	7.77%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	4.85%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	4.85%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	2.91%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.97%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.97%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002270	Freshwater microbial communities from Lake Mendota, WI - 15JUL2010 deep hole epilimnion	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300004240	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300007177	Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projects	Environmental	Open in IMG/M
3300007344	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007541	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG	Environmental	Open in IMG/M
3300007544	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3	Environmental	Open in IMG/M

Showing 1 to 10 of 70 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J29576_1024371	3300002270	Freshwater	MWINITNDSIRNEFEAEFEIFDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWT
B570J40625_1000606994	3300002835	Freshwater	MWINITDDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIDEQRIRYDNGSRVHEWDEHWTCGL*
B570J40625_1001689353	3300002835	Freshwater	MWINITNDSIRNEFEAEFEIFDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL*
B570J40625_1005082523	3300002835	Freshwater	MWINITDDSIRNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIDEQRIRYDNG
Ga0007787_103745142	3300004240	Freshwater Lake	LKTYSHERSLPKQLTQLYCVSRHDSRNVLLFNFFDMWINITDDSIRNEFQAEFEIFDYSGEFKFRMFRDETFDIYDVEAVTSEGDDYNLNDVQMEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL*
Ga0074472_103785713	3300005833	Sediment (Intertidal)	YSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL*
Ga0070749_102143492	3300006802	Aqueous	MWINITDDSERNEFQAEFEIFNYCGDFKFRMFRDETFDIYDVEARTSEGDDYTLNDVQMEGLNYWLQELINEQGIRYDNGS
Ga0070749_102667424	3300006802	Aqueous	FCSMWINITDDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL*
Ga0070749_105774942	3300006802	Aqueous	FCSMWINITDDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDIEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL*
Ga0070749_107578501	3300006802	Aqueous	KFRMYRDQSFKVYDIEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL*
Ga0102978_13065543	3300007177	Freshwater Lake	MWINITDDSERNEFQAEFEIYDYSGEFKFIMYRDQSFKVYDIEAVTSEGDEYTLNDVQMEGLYYWLQELIDEQGIRYDNGSRVHEWDEHWTCGL*
Ga0070745_13590141	3300007344	Aqueous	EFKFRMYRDQSFKVYDIEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL*
Ga0099851_10605393	3300007538	Aqueous	MWINITDGIEKNQYETEFEIFNYCGDFKFRMFRNETFDIYDVQAYTSEGDDHIMSSTQLDGLHYWLQELINEKGICYDNGYSYHEWDEHWTCGL*
Ga0099848_10999215	3300007541	Aqueous	MWINITDGIEKNQYEAEFEIFNYCGDFKFRMFRNETFDIYDVQAYTSEGDDHIMSSTQLDGLHYWLQELINEKGICYDNGYSYHEWDEHWTCGL*
Ga0102861_11940601	3300007544	Estuarine	MWINITDDSIRNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL*
Ga0070751_11558681	3300007640	Aqueous	MWINITDDSIRNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDIEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL*
Ga0102862_10201202	3300007670	Estuarine	MWINITDDSIRNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL*
Ga0114340_11462093	3300008107	Freshwater, Plankton	MWINITDDSIRNEFQAEFEIFDYSGEFKFRMFRDETFDIYDVEAVTSEGDDYNLNDVQMEGLYYWLQELIDKQGICYDNGSRVHEWDEHWTCGI*
Ga0114343_11869511	3300008110	Freshwater, Plankton	NVLLFNFFDMWINITDDSIRNEFQAEFEIFDYSGEFKFRMFRDETFDIYDVEAVTSEGDDYNLNDVQMEGLYYWLQELIDKQGICYDNGSRVHEWDEHWTCGI*
Ga0114363_10815453	3300008266	Freshwater, Plankton	MWINITDDSERNEFQAEFEIFNYCGDFKFTMYRDQSFNIYDVEAVTSEGDDYTLNDVQMEGLYYWLQELIDEQGIRYDNGSRVHEWDEHWTCGI*
Ga0114876_10756283	3300008448	Freshwater Lake	MWINITDDSIRNEFQAEFEIFNYSGEFKFTMYRDQSFNIYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL*
Ga0114876_11636851	3300008448	Freshwater Lake	MWINITDDSERNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDDYTLNDVQMEGLYYWLQELIDEQGIRYDNGSRVHEWDEHWTCGL*
Ga0114876_12193511	3300008448	Freshwater Lake	MWINITDDSERNEFQAEFEIFNYSGEFKFTMYRDQSFNIYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL*
Ga0114880_10655292	3300008450	Freshwater Lake	MWINITDDSERNEFQAEFEIFNYCGDFKFTMYRDQSFKVYDVEAVTSEGDDYTLNDVQMEGLYYWLQELIDEQGIRYDNGSGVHEWDEHWTCGL*
Ga0102860_10052672	3300009056	Estuarine	MKLLISLYSIINPKTNDYERSLRKQLTQLYCFSWHDSRNVLLLNFCNMWINITDDSERNEFQAEFEIYDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL*
Ga0129333_100723851	3300010354	Freshwater To Marine Saline Gradient	MKLLISLYSINPKTNDYERSLCKQLTQLYRISWHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDIEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL*
Ga0129333_101126224	3300010354	Freshwater To Marine Saline Gradient	MWINITDGIEKNQYEAEFEIFNYCGDFKFRMFRDESFDIYDVQAYTSEGDDHIMSSTQLDGLHYWLQELINEKGICYDNGYSYHEWDEHAINGL*
Ga0129333_104275261	3300010354	Freshwater To Marine Saline Gradient	MWINITNDSIRNEFEAEFEIFDYSGEFKFRMYRDQSFKVYDIEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL*
Ga0129333_115038943	3300010354	Freshwater To Marine Saline Gradient	YDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIDEQRIRYDNGSRVHEWDEHWTCGL*
Ga0129336_100645741	3300010370	Freshwater To Marine Saline Gradient	NFFDMWINITDDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL*
Ga0151517_16118	3300011113	Freshwater	MWINITDDSERNEFQAEFEIYDYLGEFKFRMYRDQSFEIYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDQRIRYDNGSRVHEWDEHWTCGL*
Ga0181363_10214535	3300017707	Freshwater Lake	FQAEFEIFDYSGEFKFRMFRDETFDIYDVEAVTSEGDDYNLNDVQMEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0181363_10384081	3300017707	Freshwater Lake	LYCVSRHDSRNVLLFNFCSMWINITDDSIRNEFQAEFEIFDYSGEFKFRMYRDQSFKVYDIEAVTSEGDEYTLNDVQMEGLYYWLQELIDEQRIRYDNGSRVHEWDEHWTCGL
Ga0181363_10670262	3300017707	Freshwater Lake	MWINITDDSIRNEFQAEFEIFNYSGEFKFTMYRDQSFNIYDVEAVTSEGDEYTLNDVQMEGLYYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0181352_10149835	3300017747	Freshwater Lake	MWINITDDSIRNEFQAEFEIFDYSGEFKFRMYRDQSFKVYDIEAVTSEGDEYTLNDVQMEGLYYWLQELIHDERIRYDNGSRVHEWDEHWTCGL
Ga0181352_10682483	3300017747	Freshwater Lake	MWINITDDSERNEFQAEFEIFDYSGEFKFTMYRDQSFNIYDVEAVTSEGDEYTLNDVQMEGLYYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0211729_112821562	3300020172	Freshwater	MWINITDDSERNEFQAEFEIFNYCGDFKFRMFRDETFDIYDVEARTSEGDEYTLNDVQMEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0208050_10022354	3300020498	Freshwater	MWINITDDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIDEQRIRYDNGSRVHEWDEHWTCGL
Ga0208050_10149533	3300020498	Freshwater	VSRHDSRNVLLFNFCSMWINITDDSIRNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0208593_10036113	3300020511	Freshwater	MWINITNDSIRNEFEAEFEIFDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0208593_10359692	3300020511	Freshwater	FQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIDEQRIRYDNGSRVHEWDEHWTCGL
Ga0181353_11081212	3300022179	Freshwater Lake	MWINITDDSIRNEFQAEFEIFDYSGEFKFRMFRDETFDIYDVEAVTSEGDDYNLNDVQMEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0196905_10030751	3300022198	Aqueous	MWINITDGIEKNQYEAEFEIFNYCGDFKFRMFRNETFDIYDVQAYTSEGDDHIMSSTQLDGLHYWLQELINEKGICYDNGYSYHEWDEHWTCGL
Ga0255223_10065164	3300024480	Freshwater	MWINITDDSIRNEFQAEFEIYDYSGEFKFRMYRDQSFEIYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDQRIQYDNGSGVHEWDEHWTCGL
Ga0255223_10365851	3300024480	Freshwater	LYRISRHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL
Ga0255224_10101884	3300024483	Freshwater	MWINITDDSERNEFQAEFEIFNYCGDFKFRMYRDQSFEIYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDQRIQYDNGSGVHEWDEHWTCGL
Ga0255228_10326391	3300024531	Freshwater	DSRNVLLFNFFDMWINITDDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL
Ga0255231_10049292	3300024539	Freshwater	MCINITDDSIRNEFQAEFEIYDYSGEFKFRMYRDQSFEIYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDQRIQYDNGSGVHEWDEHWTCGL
Ga0255232_10016761	3300024558	Freshwater	LYRISRHDSRNVLLFNFFDMWINITDDSIRNEFQAEFEIYDYSGEFKFRMYRDQSFEIYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDQRIQYDNGSGVHEWDEHWTCGL
Ga0255232_11324872	3300024558	Freshwater	PKQLTQLYCISRHDSRNVLLFNFCSMWINITDDSERNEFQAEFEIFNDCGDFKFRMFRDETFDIYDVEARTSEGDDYTLNDVQMEGLNYWLQELINEQGIRYDNGSRVHEWDEHWTCGL
Ga0256302_10442433	3300024571	Freshwater	SLPKQLTQLYRISRHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCG
Ga0208644_11645861	3300025889	Aqueous	HDSRNVLLFNFCSMWINITDDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDIEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL
Ga0208644_11746224	3300025889	Aqueous	WINITDDSERNEFQAEFEIYGYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0256298_10026862	3300026415	Freshwater	MWINITDDSIRNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDQRIQYDNGSGVHEWDEHWTCGL
Ga0256297_10213532	3300026435	Freshwater	MWINITDDSIRNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL
Ga0255074_10004034	3300027121	Freshwater	MKLLISLYSINNPKTNDYERPLCKQLTQLYRISRHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL
Ga0255074_10067874	3300027121	Freshwater	FKFRMYRDQSFEIYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDQRIQYDNGSGVHEWDEHWTCGL
Ga0255074_10132643	3300027121	Freshwater	LTQLYRISRHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0255074_10242342	3300027121	Freshwater	MWINITDDSERNEFQAEFEIFNYCGDFKFRMFRDETFDIYDVEARTSEGDDYTLNDVQMEGLNYWLQELINEQGIRYDNGSRVHEWDEHWTCGL
Ga0255074_10492831	3300027121	Freshwater	MWINITNDSIRNEFEAEFEIFDYSGEFKFRMYRDQSFKVYDIEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL
Ga0255090_10125142	3300027123	Freshwater	MWINITDDSIRNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0255090_10525042	3300027123	Freshwater	CISRHDSRNVLLFNFCSMWINITDDSERNEFQAEFEIFNYCGDFKFRMFRDETFDIYDVEARTSEGDDYTLNDVQMEGLNYWLQELINEQGIRYDNGSRVHEWDEHWTCGL
Ga0255098_10022373	3300027126	Freshwater	MKLLISLYSINNPKTNDYERPLCKQLTQLYRISRHDSRNVLLFNFFDMWINITDDSIRNEFQAEFEIYDYSGEFKFRMYRDQSFEIYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL
Ga0255098_10029995	3300027126	Freshwater	PKQLTQLYRISRHDSRNVLLFNFFDMWINITDDSIRNEFQAEFEIYDYSGEFKFRMYRDQSFEIYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDQRIQYDNGSGVHEWDEHWTCGL
Ga0255098_10075142	3300027126	Freshwater	MWINITDDSERNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0255067_10502542	3300027129	Freshwater	SRNVLLFNFCSMWINITDDSERNEFQAEFEIFNYCGDFKFRMFRDETFDIYDVEARTSEGDDYTLNDVQMEGLNYWLQELINEQGIRYDNGSRVHEWDEHWTCGL
Ga0255089_10040165	3300027130	Freshwater	ISRHDSRNVLLFNFFDMWINITDDSIRNEFQAEFEIYDYSGEFKFRMYRDQSFEIYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDQRIQYDNGSGVHEWDEHWTCGL
Ga0255069_10100083	3300027134	Freshwater	DDSERNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0255073_10227481	3300027135	Freshwater	DYERPLCKQLTQLYRISRHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0255092_10266541	3300027137	Freshwater	QLTQLYRISRHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0255076_10272073	3300027141	Freshwater	DSRNVLLFNFFDMWINITDDSERNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0255065_10075804	3300027142	Freshwater	ERPLCKQLTQLYRISRHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL
Ga0255100_10035746	3300027152	Freshwater	PKTNDYERPLCKQLTQLYRISRHDSRNVLLFNFFDMWINITDDSIRNEFQAEFEIYDYSGEFKFRMYRDQSFEIYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDQRIQYDNGSGVHEWDEHWTCGL
Ga0255100_10365923	3300027152	Freshwater	INITDDSERNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0255078_10702501	3300027156	Freshwater	LKTYSHERPLCKQLTQLYRISRHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0208802_10617842	3300027210	Estuarine	GEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0255096_10335651	3300027302	Freshwater	FNFCSMWINITDDSIRNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0255096_10417121	3300027302	Freshwater	DYERPLCKQLTQLYRISRHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL
Ga0255087_10036806	3300027337	Freshwater	RSLPKQLTQLYRISRHDSRNVLLFNFFDMWINITDDSIRNEFQAEFEIYDYSGEFKFRMYRDQSFEIYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDQRIQYDNGSGVHEWDEHWTCGL
Ga0255087_10045196	3300027337	Freshwater	ISLYSINNPKTNDYERPLCKQLTQLYRISRHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL
Ga0255091_10237751	3300027487	Freshwater	YERPLCKQLTQLYRISRHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0255091_10730141	3300027487	Freshwater	MWINITDDSIRNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIDEQRIRYDNGSRVH
Ga0255084_10851702	3300027488	Freshwater	INITDDSIRNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0255095_10355901	3300027489	Freshwater	LYRISRHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0255097_10374223	3300027491	Freshwater	SGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL
Ga0255093_11033001	3300027492	Freshwater	FNFFDMWINITDDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL
Ga0255094_10264851	3300027494	Freshwater	ERPLCKQLTQLYRISRHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0255077_10223041	3300027529	Freshwater	LTQLYRISRHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL
Ga0255085_10031541	3300027538	Freshwater	ITDDSIRNEFQAEFEIYDYSGEFKFRMYRDQSFEIYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDQRIQYDNGSGVHEWDEHWTCGL
Ga0255085_10946871	3300027538	Freshwater	TQLYRISRHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0255068_10006615	3300027579	Freshwater	MKLLISLYSINNPKTNDYERPLCKQLTQLYRISRHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL
Ga0255088_10110081	3300027597	Freshwater	NITDDSIRNEFQAEFEIYDYSGEFKFRMYRDQSFEIYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDQRIQYDNGSGVHEWDEHWTCGL
Ga0255079_10008601	3300027601	Freshwater	ISRHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL
Ga0255079_10316511	3300027601	Freshwater	MKLLISLYSINNPKTNDYERPLCKQLTQLYRISRHDSRNVLLFNFFDMWINITDDSERNEFQAEFEIFDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0255079_10607882	3300027601	Freshwater	MWINITDDSERNEFEAEFEIYDYSGEFKFTMYRDQSFKVYDIEAVTSEGDEYTLNDVQMEGLYYWLQELIYDQRIRYDNGSRVHEWDEHWTCGL
Ga0209033_12043482	3300027697	Freshwater Lake	LKTYSHERSLPKQLTQLYCVSRHDSRNVLLFNFFDMWINITDDSIRNEFQAEFEIFDYSGEFKFRMFRDETFDIYDVEAVTSEGDDYNLNDVQMEGLNYWLQELINEQSICYDNGSGVHEWDEHWTCGL
Ga0255226_10186452	3300028255	Freshwater	MWINITDDSIRNEFQAEFEIFNYCGDFKFRMFRDETFDIYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDQRIQYDNGSGVHEWDEHWTCGL
Ga0255227_10229012	3300028266	Freshwater	MWINITDDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL
Ga0255227_10352633	3300028266	Freshwater	RNEFQAEFEIYDYSGEFKFRMYRDQSFEIYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIYDQRIQYDNGSGVHEWDEHWTCGL
Ga0256301_10704472	3300029697	Freshwater	MWINITDDSERNEFQAEFEIYDYSGEFKFTMYRDQSFKVYDVEAVTSEGDEYTLNDVQIEGLNYWLQELINEQSICYDNGSGVHEWDEHWTC
Ga0255233_11235331	3300029699	Freshwater	IYNYERSLPKQLTQLYCISRHDSRNVLLFNFCSMWINITDDSERNEFQAEFEIFNYCGDFKFRMFRDETFDIYDVEARTSEGDDYTLNDVQMEGLNYWLQELINEQGIRYDNGSRVHEWDEHWTCGL
Ga0316621_109360523	3300033488	Soil	RNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDVEAVTSEGDEYTLNDVQMEGLYYWLQELIDEQRIRYDNGSGVHEWDEHWTCGL
Ga0348337_195127_1_267	3300034418	Aqueous	DDSERNEFQAEFEIYDYSGEFKFRMYRDQSFKVYDIEAVTSEGDEYTLNDVQMEGLYYWLQELIYDERIRYDNGSRVHEWDEHWTCGL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098934

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences