Metagenome Family F098884

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098884
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	41 residues
Representative Sequence	MVFRTAGAIAALLIGLGASGGEALAQYYPPPQAYPPQAY
Number of Associated Samples	89
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	95.92 %
% of genes near scaffold ends (potentially truncated)	92.23 %
% of genes from short scaffolds (< 2000 bps)	90.29 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.728 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.272 % of family members)
Environment Ontology (ENVO)	Unclassified (35.922 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.398 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 35.82% β-sheet: 0.00% Coil/Unstructured: 64.18%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF02627	CMD	46.60
PF02615	Ldh_2	4.85
PF02586	SRAP	1.94
PF13417	GST_N_3	0.97
PF02353	CMAS	0.97
PF00011	HSP20	0.97
PF04392	ABC_sub_bind	0.97
PF03733	YccF	0.97
PF11300	DUF3102	0.97
PF09523	DUF2390	0.97
PF03548	LolA	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	46.60
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	46.60
COG2055	Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family	Energy production and conversion [C]	4.85
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	1.94
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.97
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.97
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	0.97
COG2834	Outer membrane lipoprotein-sorting protein	Cell wall/membrane/envelope biogenesis [M]	0.97
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.97
COG3304	Uncharacterized membrane protein YccF, DUF307 family	Function unknown [S]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.73 %
Unclassified	root	N/A	24.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.73 %
Unclassified	root	N/A	24.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.73 %
Unclassified	root	N/A	24.27 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	70.87 %
Unclassified	root	N/A	24.27 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	66.02 %
Unclassified	root	N/A	24.27 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	47.57 %
Unclassified	root	N/A	24.27 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	12.62 %

Name	Rank	Taxonomy	Distribution
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	37.86 %
Unclassified	root	N/A	24.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.62 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	5.83 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Mycoplana	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana	37.86 %
Unclassified	root	N/A	24.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.62 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	5.83 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.97 %

Name	Rank	Taxonomy	Distribution
Mycoplana dimorpha	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	37.86 %
Unclassified	root	N/A	24.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.62 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	4.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.97 %

Name	Rank	Taxonomy	Distribution
Mycoplana dimorpha	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	37.86 %
Unclassified	root	N/A	24.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.62 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FIHLEPW02QWO6C	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	519	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_11121501	Not Available	534	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1025914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	923	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1006620	All Organisms → cellular organisms → Bacteria → Proteobacteria	2213	Open in IMG/M
3300000787\|JGI11643J11755_11116576	Not Available	539	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10068649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	768	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1043170	Not Available	636	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1017484	All Organisms → cellular organisms → Bacteria → Proteobacteria	1182	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1031242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	841	Open in IMG/M
3300000956\|JGI10216J12902_101743780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	827	Open in IMG/M
3300001661\|JGI12053J15887_10291858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	799	Open in IMG/M
3300001867\|JGI12627J18819_10083779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1323	Open in IMG/M
3300005332\|Ga0066388_102524965	Not Available	934	Open in IMG/M
3300005558\|Ga0066698_10936695	All Organisms → cellular organisms → Bacteria → Proteobacteria	553	Open in IMG/M
3300005587\|Ga0066654_10515929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	656	Open in IMG/M
3300005713\|Ga0066905_100448677	All Organisms → cellular organisms → Bacteria → Proteobacteria	1060	Open in IMG/M
3300005713\|Ga0066905_102283455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	505	Open in IMG/M
3300005764\|Ga0066903_107483653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	563	Open in IMG/M
3300006806\|Ga0079220_11522677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	575	Open in IMG/M
3300007258\|Ga0099793_10077493	All Organisms → cellular organisms → Bacteria	1512	Open in IMG/M
3300009012\|Ga0066710_100729808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1513	Open in IMG/M
3300009143\|Ga0099792_10662619	Not Available	671	Open in IMG/M
3300010047\|Ga0126382_11429243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	632	Open in IMG/M
3300010303\|Ga0134082_10253550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	729	Open in IMG/M
3300010360\|Ga0126372_10921653	Not Available	878	Open in IMG/M
3300010360\|Ga0126372_12816858	Not Available	538	Open in IMG/M
3300010376\|Ga0126381_100277058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2286	Open in IMG/M
3300012199\|Ga0137383_10455204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	937	Open in IMG/M
3300012202\|Ga0137363_10326588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1265	Open in IMG/M
3300012203\|Ga0137399_10241395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1479	Open in IMG/M
3300012355\|Ga0137369_10680681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	708	Open in IMG/M
3300012356\|Ga0137371_11353203	Not Available	524	Open in IMG/M
3300012683\|Ga0137398_10624347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	746	Open in IMG/M
3300012939\|Ga0162650_100083578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	553	Open in IMG/M
3300012941\|Ga0162652_100082366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	560	Open in IMG/M
3300013297\|Ga0157378_11099275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	832	Open in IMG/M
3300014157\|Ga0134078_10548528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	545	Open in IMG/M
3300014325\|Ga0163163_10203763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2027	Open in IMG/M
3300015242\|Ga0137412_10563531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	866	Open in IMG/M
3300015371\|Ga0132258_10444086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3232	Open in IMG/M
3300015374\|Ga0132255_102229571	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300016319\|Ga0182033_10630762	Not Available	933	Open in IMG/M
3300016341\|Ga0182035_11357465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	637	Open in IMG/M
3300016387\|Ga0182040_11572398	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300016422\|Ga0182039_10654174	Not Available	923	Open in IMG/M
3300016422\|Ga0182039_11623980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	590	Open in IMG/M
3300017657\|Ga0134074_1255850	Not Available	631	Open in IMG/M
3300018053\|Ga0184626_10182578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	891	Open in IMG/M
3300018072\|Ga0184635_10350521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	567	Open in IMG/M
3300018431\|Ga0066655_10586554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	749	Open in IMG/M
3300018482\|Ga0066669_12221072	Not Available	521	Open in IMG/M
3300019356\|Ga0173481_10351370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	704	Open in IMG/M
3300019876\|Ga0193703_1037928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	747	Open in IMG/M
3300024055\|Ga0247794_10254636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	581	Open in IMG/M
3300025960\|Ga0207651_10707702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	888	Open in IMG/M
3300026358\|Ga0257166_1069778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	512	Open in IMG/M
3300026899\|Ga0209326_1007495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	817	Open in IMG/M
3300027288\|Ga0208525_1037670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	597	Open in IMG/M
3300027603\|Ga0209331_1155548	Not Available	540	Open in IMG/M
3300027874\|Ga0209465_10036629	All Organisms → cellular organisms → Bacteria	2323	Open in IMG/M
3300027909\|Ga0209382_12220459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	518	Open in IMG/M
3300028720\|Ga0307317_10280838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	562	Open in IMG/M
3300028807\|Ga0307305_10250371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	809	Open in IMG/M
3300031226\|Ga0307497_10563333	All Organisms → cellular organisms → Bacteria → Proteobacteria	571	Open in IMG/M
3300031231\|Ga0170824_124185905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617	Open in IMG/M
3300031446\|Ga0170820_11252320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	599	Open in IMG/M
3300031544\|Ga0318534_10541861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	663	Open in IMG/M
3300031546\|Ga0318538_10346247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	802	Open in IMG/M
3300031573\|Ga0310915_10701241	Not Available	715	Open in IMG/M
3300031668\|Ga0318542_10435464	Not Available	679	Open in IMG/M
3300031681\|Ga0318572_10092942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1692	Open in IMG/M
3300031682\|Ga0318560_10101688	All Organisms → cellular organisms → Bacteria	1487	Open in IMG/M
3300031682\|Ga0318560_10312591	Not Available	847	Open in IMG/M
3300031736\|Ga0318501_10154043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1184	Open in IMG/M
3300031751\|Ga0318494_10276159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	966	Open in IMG/M
3300031781\|Ga0318547_10469984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	775	Open in IMG/M
3300031794\|Ga0318503_10030231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1584	Open in IMG/M
3300031796\|Ga0318576_10592822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300031833\|Ga0310917_10505920	Not Available	822	Open in IMG/M
3300031890\|Ga0306925_10304697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1713	Open in IMG/M
3300031893\|Ga0318536_10115265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1354	Open in IMG/M
3300031896\|Ga0318551_10382058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	799	Open in IMG/M
3300031946\|Ga0310910_11513735	Not Available	514	Open in IMG/M
3300032001\|Ga0306922_10430954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1410	Open in IMG/M
3300032001\|Ga0306922_11126159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	803	Open in IMG/M
3300032001\|Ga0306922_11230748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	761	Open in IMG/M
3300032001\|Ga0306922_12275768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	520	Open in IMG/M
3300032009\|Ga0318563_10394043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	749	Open in IMG/M
3300032039\|Ga0318559_10038929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1944	Open in IMG/M
3300032042\|Ga0318545_10258622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	625	Open in IMG/M
3300032043\|Ga0318556_10316860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	815	Open in IMG/M
3300032043\|Ga0318556_10419968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	699	Open in IMG/M
3300032044\|Ga0318558_10396942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	686	Open in IMG/M
3300032055\|Ga0318575_10320186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Mycoplana → Mycoplana dimorpha	785	Open in IMG/M
3300032076\|Ga0306924_10353254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1685	Open in IMG/M
3300032090\|Ga0318518_10092424	Not Available	1502	Open in IMG/M
3300032261\|Ga0306920_101122432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1139	Open in IMG/M
3300032261\|Ga0306920_101402080	Not Available	1001	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.20%
Host-Associated	Host-Associated	6.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.26%
Plants	Host-Associated → Plants	6.80%
Aquatic	Environmental → Aquatic	1.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.32%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.91%
Sediment	Environmental → Aquatic → Sediment	1.94%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.94%
Roots	Host-Associated → Plants → Roots	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.64%
Loam	Environmental → Terrestrial → Soil → Loam	10.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.94%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.97%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.97%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	44.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.94%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.94%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.97%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	7.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.94%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.97%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019876	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026899	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_02625590	2070309004	Green-Waste Compost	MGFFRTAGAVATLLVGLGASGGEALAQYYPPAQAYPPPQA
ICChiseqgaiiFebDRAFT_111215011	3300000363	Soil	MVFRTAGAIVTLLIGLGSAGGEALAQYYPPPQGYPTQ
AF_2010_repII_A01DRAFT_10259143	3300000580	Forest Soil	MVFRTAGAIAALLIGLGTPGGEALAQYYPPAQAYPPSQAYPPAQGYRPSVADA
AF_2010_repII_A100DRAFT_10066201	3300000655	Forest Soil	MVFRTAGAIATLLIGLGLSAGDAFAQYYPPGQPPQGYLPSRPLPP
JGI11643J11755_111165761	3300000787	Soil	MVFRTAGAIVTLLIGLGSAGGEALAQYYPPPQGYPTQAY
AF_2010_repII_A001DRAFT_100686493	3300000793	Forest Soil	MVFRTAGAIAALLTGLGLSGGGASAQYYPPAQAYPPPQTYPPAQGYP
AP72_2010_repI_A100DRAFT_10431702	3300000837	Forest Soil	MVFRIAGAIATLLIGLGSAGGQALAQYYPPPRTYPPQAY
AP72_2010_repI_A001DRAFT_10174843	3300000893	Forest Soil	MVFRTAGAIAALLIGLGASGEALAQYYPPAPAYPP
AP72_2010_repI_A001DRAFT_10312421	3300000893	Forest Soil	MVFRTAGAVATLLIGLGASGGEALAQYYPPAQAYPPSQAYPPP
JGI10216J12902_1017437802	3300000956	Soil	MVFRMVSAIAALLIFFGALGGKALAQYYPPVQAYPPPQAYPPQGY
JGI10216J12902_1161299762	3300000956	Soil	MGFRTVCAMAALLIGLETSGGKASAQYYYPPAQAAYPPPQAYPPQVYYPRQGYRPP
JGI12053J15887_102918581	3300001661	Forest Soil	MIFRTSGAIAALLIGLVGPSGQALAQYSPPSQAYPPPQA
JGI12627J18819_100837791	3300001867	Forest Soil	LPEGKGDMVFRTASAMAALLIGLGGAGGQALAQYYPPAQA
Ga0066388_1025249651	3300005332	Tropical Forest Soil	MVFRTVSAVVVLLICLGASGGKAWAQYYPPAQAYPPPQAYPRGYHPRQP
Ga0066388_1083374101	3300005332	Tropical Forest Soil	MVFRTVSAIAALMIWFGASGGKALAQYYLPAQAYSPLQAYPPQVYYPRQGYRPPVVMTMTTMT*
Ga0066698_109366952	3300005558	Soil	MVFRTAGAIAALLTGLGLSGGGASAQYYPPAQGYPPPQAYPPAQGYPA
Ga0066654_105159291	3300005587	Soil	MVFRTAGAIVTLLISLGCAGGEALAQYYPPQGYPTQAYP
Ga0066905_1004486771	3300005713	Tropical Forest Soil	MVFRTAGAIATLLIGLGASAGDVLAQYYPPAPAYPP
Ga0066905_1022834552	3300005713	Tropical Forest Soil	MVFRTVSAIAALVIFFGASGGKALAQYYPPVQAYPPPQAYPPQGYY
Ga0066903_1043804973	3300005764	Tropical Forest Soil	MVFRTAGALATLLIAFEAGGGQALAQYYPATQVYPAKQGYSPPPADSSS
Ga0066903_1074836532	3300005764	Tropical Forest Soil	MVFRTAGAIAALLIGLGASGSEALAQYYPPAQPYPP
Ga0079220_115226771	3300006806	Agricultural Soil	MVFRTAGAIAALLTGLGLSGGGALAQYYPPAQAYPPPQA
Ga0099793_100774934	3300007258	Vadose Zone Soil	MNFRTTGAIAALLIGLGASAGDASAQYYPQPQAYPPAYPPAQGYP
Ga0066710_1007298081	3300009012	Grasslands Soil	MVFRTAGAIVTLLISLGCAGGEALAQYYPPPQGYPTQA
Ga0099792_106626191	3300009143	Vadose Zone Soil	MVFRTVSAIAVLLICFGASGGETLAQYYPPARAYPPPQTYPPQGYYPR
Ga0126374_100449453	3300009792	Tropical Forest Soil	MVFRTVSATAALLISLGASGGKASAQYYPPVQAYPLPQAYPPQGYYPRQGYRP
Ga0126382_114292432	3300010047	Tropical Forest Soil	MVFRTAGAIAALLTGLGLSGGGASAQYFPPAQAYP
Ga0134082_102535502	3300010303	Grasslands Soil	MVFRTAGAIVTLLIGLGSAGGEALAQYYPPPQGYPT
Ga0126372_109216533	3300010360	Tropical Forest Soil	MVLRAASAVVVLLICLGASGGKAWAQYYPPAQAYPPPQAYPRG
Ga0126372_128168582	3300010360	Tropical Forest Soil	MIFRTAGAIAALFLGLGGAGGQALAQYYPPAQAYP
Ga0126381_1002770584	3300010376	Tropical Forest Soil	MVFRTAGAIAALLTGLGLSGGGASAQYYPPAQAYPPPQAYPPAQGYP
Ga0137383_104552041	3300012199	Vadose Zone Soil	MVFRTVSAIAALLIFFGASGGKALAQYYPPVQAYPPPQA
Ga0137363_103265881	3300012202	Vadose Zone Soil	MVFRTAGAIATLLIGLDSAGGEALAQYYPPPQGYPTQAY
Ga0137399_102413951	3300012203	Vadose Zone Soil	MVFRTAGAIAALLIGLGTTGDRASAQYYPPSQAYPPPQAY
Ga0137369_106806812	3300012355	Vadose Zone Soil	MIFRTTGAVATLLIGLAGSGGQALAQYYPPPPQAYP
Ga0137371_113532031	3300012356	Vadose Zone Soil	MVFRTVSAIVALLIFFGASGGKALAQYYPPVQAYP
Ga0137398_106243471	3300012683	Vadose Zone Soil	MVFRTVGAAATLLVGLAWPDGQALAQYYAQPPQVYELPPGT
Ga0162650_1000835781	3300012939	Soil	MVFRTAGAIAALLIGLGTVGDQALAQYYPPPQAYPPPQAYP
Ga0162652_1000823662	3300012941	Soil	MVFRTAGAIATLLIGLGASAGDALAQYYPPAQAYPPPQAYPPAQGYP
Ga0157378_110992751	3300013297	Miscanthus Rhizosphere	MVFRTAGAIAALLIGLGTSGGQALAQYYPPPQAYPPPHA*
Ga0134078_105485281	3300014157	Grasslands Soil	MVFRTAGAITTLLIGLGASAGDALAQYYPPAQAYPPPQAHPP
Ga0163163_102037634	3300014325	Switchgrass Rhizosphere	MVFRTAGAIAALLIGLGTSGDQALAQYYPSPQAYPPSH
Ga0137412_105635313	3300015242	Vadose Zone Soil	MVFRTAGAIAALLAGLGLSGGGASAQYYPPAQAYPPPQAYP
Ga0132258_104440866	3300015371	Arabidopsis Rhizosphere	MGFRTVCAIAALLIGLDASGGKASAQYYPPAQAYPPPQAYPQVYPSAGLSSARGG*
Ga0132258_117355853	3300015371	Arabidopsis Rhizosphere	MGFRTVCAIAALVIGLEAWGGKASAQYYPPAQAYPPPPQVYYPRQGYRP
Ga0132255_1022295712	3300015374	Arabidopsis Rhizosphere	MVFRTAGAIAALLIGLGTTGAHASAQYYPPPQAYPPPQAYP
Ga0182033_106307623	3300016319	Soil	MIVRTAGAIATLLIALGGLSTQALAQYYPPAQAYPPQDYP
Ga0182035_113574652	3300016341	Soil	MVVRTAGALATLLIGLTGPGGHALAQYSPLPAQAYPPAQAYPPPT
Ga0182040_115723982	3300016387	Soil	MVLRTAGAIVTLLIGLGAQALAQPYPPQQAYPRQPFPSSDELP
Ga0182039_106541741	3300016422	Soil	MIVRMAGAIATLLIAFGGLSTQALAQYYPPAQAYPP
Ga0182039_116239801	3300016422	Soil	MIFRTAAGAASAILLGLAASAGDAGAQYYPAPQAYPSQAYPPAQGYPRYGASP
Ga0134074_12558501	3300017657	Grasslands Soil	MVFRTVSAIAALLIFFGASGGKALAQYYPPVQAYPPPQAYPPQG
Ga0184626_101825783	3300018053	Groundwater Sediment	MVFRTAGAITALLLGFGGQALAQYYPPAPQSYPPPQ
Ga0184635_103505212	3300018072	Groundwater Sediment	MVFRTAGAIAALLIGLGTIGDQALAQYYPPPQAYPPPQAY
Ga0066655_105865541	3300018431	Grasslands Soil	MVFRTVSAIAALLIFFGASGGKALAQYYPPVQAYP
Ga0066669_122210721	3300018482	Grasslands Soil	MVFRTASAIATLLIGFGGAGGQALAQYYPPAQTYPPQGYPTRQPLP
Ga0173481_103513702	3300019356	Soil	MVFRTAGAIAALLIGLGTSGDQALAQYYPSPQAYP
Ga0193703_10379282	3300019876	Soil	MVFRTAGAIAALLIGLGTIGDQALAQYYPPPQAYPPPQ
Ga0247794_102546361	3300024055	Soil	MVFRTAGAIAALLIGMGTSGDQALAQYYPPPQAYPPPQ
Ga0207651_107077021	3300025960	Switchgrass Rhizosphere	MVFRTAGAIAALLIGLGTSGDQALAQYYPSPQAYPPSHAYPPPQAY
Ga0257166_10697782	3300026358	Soil	MNFRTTGAIAALLIGLGASAGDASAQYYPQPQAYPP
Ga0209326_10074951	3300026899	Forest Soil	MVFRTAGAIAALLIGLGASGGGALAQYYPAPQAYPPQAYPPPQGYRPSVAD
Ga0208525_10376701	3300027288	Soil	MVFRTAGAIAALLIGLGASGGGALAQYYPPPQAYPPQAYP
Ga0209331_11555482	3300027603	Forest Soil	MVFCTAGAIATLLIGVSGQTLAQYHPPPQVYPRQALPP
Ga0209465_100366291	3300027874	Tropical Forest Soil	MIFRTVSAIAALMICVGALGGRALAQYYPPAQPYPPSQVYP
Ga0209382_122204591	3300027909	Populus Rhizosphere	MIFRTAGAIATLLLGLGGSGSQALAQFYPPPPAYPP
Ga0307317_102808382	3300028720	Soil	MVFRTAGAIAALLIGLGTTGDHASAQYYPPPQAYPPPQAY
Ga0307305_102503711	3300028807	Soil	MVFRTAGAIAALLIGLGTTGDQALAQYYPPPQAYPPPQ
Ga0307497_105633331	3300031226	Soil	MVFRTVSAIAALLVCLGASGGKALAQYYPPAQAYPPPQAYPPQIYY
Ga0170824_1241859053	3300031231	Forest Soil	MVFRTAGAIATVLIGVTGQALAQYYPPPQAYPRPS
Ga0170820_112523202	3300031446	Forest Soil	MVFRTAGVIAAVMIVLSGQTLAQYYPPPQVYPRQPLPP
Ga0318534_105418611	3300031544	Soil	MVFRTAGAIAALLIGLGASGGEALAQYYPPPQAYPPQAYPPQ
Ga0318538_103462473	3300031546	Soil	MVFRTTGAIAALLIGLGASGGDALAQYYPPPQAYPPQTYPP
Ga0310915_107012411	3300031573	Soil	MIVRTVGAIATLLIALGGLSTQALAQYYPPAQAYPPQDYPPAQTYSR
Ga0318542_104354643	3300031668	Soil	MIFRTVSAIAALMICVGALGGRALAQYYPPAQPYPPSQVYPPEGYY
Ga0318572_100929421	3300031681	Soil	MIFRAVSAIAALMICVGALGGRALAQYYPPAQPYPPSQVYPPEGYY
Ga0318560_101016884	3300031682	Soil	MVFRTTGAIAALLIGLGASGGDALAQYYPPPQAYPPQTY
Ga0318560_103125912	3300031682	Soil	MIVRTVGAIATLLIALGGLSTQALAQYYPPAQAYPPQD
Ga0318501_101540431	3300031736	Soil	MVFRTAGVIATLVIGLGASQALAQYYPPAPVYPPAPVY
Ga0318494_102761591	3300031751	Soil	MVFRTAGAIAALLIGLGTPGGQALAQYYPPPQAYPPPQA
Ga0318547_104699841	3300031781	Soil	MVFRTAGAVAVLLIGLGTPGGEALAQYYPPAQAYPP
Ga0318503_100302311	3300031794	Soil	MVFRTAGAIAALLIGLGASGGEALAQYYPPPQAYPPQ
Ga0318576_105928222	3300031796	Soil	MVFRTVSAIAALLIFFGASGGKALAQYYPPVQAYPPPQAYPPQGYYP
Ga0310917_105059202	3300031833	Soil	MIVRTAGAIATLLIALGGLSTQALAQYYPPAQAYPPQD
Ga0306925_103046971	3300031890	Soil	MVFRTAGAIAALLIGLGASGGEALAQYYPPPQAYP
Ga0318536_101152654	3300031893	Soil	MVFRTAGAIAALLIGLGASGGEALAQYYPPPQAYPPQAYPP
Ga0318551_103820581	3300031896	Soil	MVFRTAGAVAVLLIGLGTPGGEALAQYYPPAQAYPPSQAYPPPQGYRPSVA
Ga0310910_115137351	3300031946	Soil	MIFRTAGAIAALLIGLGMSAGDTFAQYYPPGQAYPPPQAYPPAQGHPSS
Ga0306922_104309544	3300032001	Soil	MVFRTAGAVAVLLIGLGTPGGEALAQYYPPAQAYPRPSVAD
Ga0306922_111261592	3300032001	Soil	MVFRTAGAIATLVIGLGGAGGQALAQYHPPPEAYPPR
Ga0306922_112307481	3300032001	Soil	MIFRRVSAIAALLISLGASGKALAQYYPPVQAYPPPQAY
Ga0306922_122757681	3300032001	Soil	MVFRTAGAIAALLIGLGTSSGEALAQYYPPGQAYPPPPQAYP
Ga0318563_103940431	3300032009	Soil	MVFRTAGAIAALLIGLGTPGGEALAQYYPPAQAYPPP
Ga0318559_100389294	3300032039	Soil	MVFRTAGVIATLVIGLGASQALAQYYPPAPVYPPA
Ga0318545_102586221	3300032042	Soil	MVFRTAGAIAALLIGLGASGGEALAQYYPPPQAYPPQAYPPQAY
Ga0318556_103168603	3300032043	Soil	MVFRTAGAIAALLIGLGASGGEALAQYYPPPQAYPPQAY
Ga0318556_104199681	3300032043	Soil	MVFRTAGAIAALLIGLGASGGEALAQYYPPPQAYPPQA
Ga0318558_103969421	3300032044	Soil	MVFRTAGAIAALLIGLGASGGEALAQYYPPPQAYPPQAYP
Ga0318575_103201861	3300032055	Soil	MIFRTAGAIAALLIGLGMSAGDTFAQYYPPGQAYPP
Ga0306924_103532541	3300032076	Soil	MVFRTAGAVAVLLIGLGTPGGEALAQYYPPAQAYPPS
Ga0318518_100924241	3300032090	Soil	MVFRTAGAVATLLIGLGASGGEALAQYYPPAQAYPPSQAY
Ga0306920_1011224323	3300032261	Soil	MIFRTVSAIAALMICVGALGGRALAQYYPPAQPYPPSQ
Ga0306920_1014020801	3300032261	Soil	MIVRTVGAIATLLIALGGLSTQALAQYYPPAQAYPPQDYPPAQTY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F098884

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences