Metagenome / Metatranscriptome Family F098796

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098796
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	47 residues
Representative Sequence	MTPQPSDWRSVAEQICDEKDSNKMMALVVELDRLLEREEKARKRSH
Number of Associated Samples	57
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	90.29 %
% of genes near scaffold ends (potentially truncated)	13.59 %
% of genes from short scaffolds (< 2000 bps)	70.87 %
Associated GOLD sequencing projects	49
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.311 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil (13.592 % of family members)
Environment Ontology (ENVO)	Unclassified (22.330 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.427 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.35% β-sheet: 0.00% Coil/Unstructured: 48.65%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00072	Response_reg	11.65
PF13545	HTH_Crp_2	9.71
PF00589	Phage_integrase	2.91
PF00501	AMP-binding	1.94
PF01850	PIN	1.94
PF04892	VanZ	0.97
PF13185	GAF_2	0.97
PF04366	Ysc84	0.97
PF00069	Pkinase	0.97
PF05985	EutC	0.97
PF03631	Virul_fac_BrkB	0.97
PF01867	Cas_Cas1	0.97
PF00115	COX1	0.97
PF00392	GntR	0.97
PF12833	HTH_18	0.97
PF00027	cNMP_binding	0.97
PF01593	Amino_oxidase	0.97
PF03626	COX4_pro	0.97
PF00892	EamA	0.97
PF05598	DUF772	0.97
PF04055	Radical_SAM	0.97
PF00534	Glycos_transf_1	0.97
PF00196	GerE	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.88
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.97
COG1518	CRISPR-Cas system-associated integrase Cas1	Defense mechanisms [V]	0.97
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.97
COG3125	Heme/copper-type cytochrome/quinol oxidase, subunit 4	Energy production and conversion [C]	0.97
COG4302	Ethanolamine ammonia-lyase, small subunit	Amino acid transport and metabolism [E]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.31 %
Unclassified	root	N/A	43.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.31 %
Unclassified	root	N/A	43.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.31 %
Unclassified	root	N/A	43.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.69 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	31.07 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.69 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	14.56 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.56 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.56 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.88 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.56 %
Acidobacteriales bacterium 13_2_20CM_55_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_55_8	0.97 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.56 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	0.97 %
Acidobacteriales bacterium 13_2_20CM_55_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_55_8	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.56 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.97 %
Acidobacteriales bacterium 13_2_20CM_55_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_55_8	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10117169	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1886	Open in IMG/M
3300002915\|JGI25387J43893_1018090	Not Available	968	Open in IMG/M
3300004139\|Ga0058897_11173501	Not Available	528	Open in IMG/M
3300004479\|Ga0062595_101358050	Not Available	644	Open in IMG/M
3300005167\|Ga0066672_10329752	Not Available	995	Open in IMG/M
3300005175\|Ga0066673_10053859	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2039	Open in IMG/M
3300005176\|Ga0066679_10213578	All Organisms → cellular organisms → Bacteria → Acidobacteria	1233	Open in IMG/M
3300005179\|Ga0066684_10111027	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1694	Open in IMG/M
3300005179\|Ga0066684_11101820	Not Available	508	Open in IMG/M
3300005435\|Ga0070714_100013181	All Organisms → cellular organisms → Bacteria → Acidobacteria	6617	Open in IMG/M
3300005435\|Ga0070714_100151064	All Organisms → cellular organisms → Bacteria	2093	Open in IMG/M
3300005435\|Ga0070714_100275223	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	1562	Open in IMG/M
3300005435\|Ga0070714_100533639	Not Available	1122	Open in IMG/M
3300005435\|Ga0070714_100540670	All Organisms → cellular organisms → Bacteria	1114	Open in IMG/M
3300005435\|Ga0070714_100891163	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300005436\|Ga0070713_100383862	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1309	Open in IMG/M
3300005437\|Ga0070710_11223049	Not Available	556	Open in IMG/M
3300005437\|Ga0070710_11482070	Not Available	509	Open in IMG/M
3300005454\|Ga0066687_10532552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	696	Open in IMG/M
3300005534\|Ga0070735_10000691	All Organisms → cellular organisms → Bacteria → Acidobacteria	35020	Open in IMG/M
3300005534\|Ga0070735_10004585	All Organisms → cellular organisms → Bacteria → Acidobacteria	11600	Open in IMG/M
3300005534\|Ga0070735_10004800	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11310	Open in IMG/M
3300005534\|Ga0070735_10115882	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1678	Open in IMG/M
3300005534\|Ga0070735_10332790	Not Available	913	Open in IMG/M
3300005539\|Ga0068853_101201561	Not Available	732	Open in IMG/M
3300005560\|Ga0066670_10397134	Not Available	845	Open in IMG/M
3300005563\|Ga0068855_102095372	Not Available	570	Open in IMG/M
3300005575\|Ga0066702_10150397	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300005587\|Ga0066654_10327000	Not Available	829	Open in IMG/M
3300006028\|Ga0070717_10131726	All Organisms → cellular organisms → Bacteria	2151	Open in IMG/M
3300006028\|Ga0070717_11029347	Not Available	750	Open in IMG/M
3300006032\|Ga0066696_10240039	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1168	Open in IMG/M
3300006032\|Ga0066696_10715292	Not Available	642	Open in IMG/M
3300006893\|Ga0073928_10000626	All Organisms → cellular organisms → Bacteria	79453	Open in IMG/M
3300006893\|Ga0073928_10000628	All Organisms → cellular organisms → Bacteria	79319	Open in IMG/M
3300006893\|Ga0073928_10000968	All Organisms → cellular organisms → Bacteria	59010	Open in IMG/M
3300007819\|Ga0104322_131764	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1617	Open in IMG/M
3300007819\|Ga0104322_138713	All Organisms → cellular organisms → Bacteria	2116	Open in IMG/M
3300007982\|Ga0102924_1015227	All Organisms → cellular organisms → Bacteria	6023	Open in IMG/M
3300009093\|Ga0105240_10004411	All Organisms → cellular organisms → Bacteria	21467	Open in IMG/M
3300009093\|Ga0105240_10034008	All Organisms → cellular organisms → Bacteria → Acidobacteria	6580	Open in IMG/M
3300009093\|Ga0105240_10178358	All Organisms → cellular organisms → Bacteria	2509	Open in IMG/M
3300009093\|Ga0105240_12669125	Not Available	516	Open in IMG/M
3300009545\|Ga0105237_10606522	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1102	Open in IMG/M
3300009545\|Ga0105237_10850016	All Organisms → cellular organisms → Bacteria	919	Open in IMG/M
3300009551\|Ga0105238_10053741	All Organisms → cellular organisms → Bacteria	4047	Open in IMG/M
3300010321\|Ga0134067_10410821	Not Available	544	Open in IMG/M
3300010371\|Ga0134125_10653674	Not Available	1161	Open in IMG/M
3300010371\|Ga0134125_11169939	Not Available	841	Open in IMG/M
3300010373\|Ga0134128_12463103	All Organisms → cellular organisms → Bacteria → Acidobacteria	573	Open in IMG/M
3300010373\|Ga0134128_12729044	Not Available	544	Open in IMG/M
3300010373\|Ga0134128_12806470	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300010396\|Ga0134126_10028649	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7058	Open in IMG/M
3300010396\|Ga0134126_10081900	All Organisms → cellular organisms → Bacteria	3993	Open in IMG/M
3300010396\|Ga0134126_10156408	All Organisms → cellular organisms → Bacteria	2758	Open in IMG/M
3300010396\|Ga0134126_11329077	Not Available	796	Open in IMG/M
3300010399\|Ga0134127_12371571	Not Available	610	Open in IMG/M
3300011120\|Ga0150983_12391720	Not Available	1876	Open in IMG/M
3300011120\|Ga0150983_14396585	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	710	Open in IMG/M
3300012469\|Ga0150984_101425174	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1181	Open in IMG/M
3300013104\|Ga0157370_10814746	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	849	Open in IMG/M
3300013307\|Ga0157372_10477225	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1454	Open in IMG/M
3300018431\|Ga0066655_10259052	All Organisms → cellular organisms → Bacteria → Acidobacteria	1115	Open in IMG/M
3300018433\|Ga0066667_12164950	Not Available	517	Open in IMG/M
3300018468\|Ga0066662_10916859	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	861	Open in IMG/M
3300019888\|Ga0193751_1095403	Not Available	1155	Open in IMG/M
3300020579\|Ga0210407_10214641	All Organisms → cellular organisms → Bacteria	1496	Open in IMG/M
3300020579\|Ga0210407_10510568	Not Available	939	Open in IMG/M
3300021168\|Ga0210406_10172062	Not Available	1809	Open in IMG/M
3300021168\|Ga0210406_10303672	All Organisms → cellular organisms → Bacteria → Acidobacteria	1297	Open in IMG/M
3300021479\|Ga0210410_10361939	Not Available	1301	Open in IMG/M
3300022557\|Ga0212123_10000509	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	125835	Open in IMG/M
3300022557\|Ga0212123_10001130	All Organisms → cellular organisms → Bacteria → Acidobacteria	77332	Open in IMG/M
3300022557\|Ga0212123_10001496	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	64602	Open in IMG/M
3300022557\|Ga0212123_10014025	All Organisms → cellular organisms → Bacteria	10308	Open in IMG/M
3300025898\|Ga0207692_10986813	Not Available	556	Open in IMG/M
3300025913\|Ga0207695_10044785	All Organisms → cellular organisms → Bacteria → Acidobacteria	4703	Open in IMG/M
3300025913\|Ga0207695_10049749	All Organisms → cellular organisms → Bacteria	4414	Open in IMG/M
3300025913\|Ga0207695_10058420	All Organisms → cellular organisms → Bacteria → Proteobacteria	4004	Open in IMG/M
3300025913\|Ga0207695_10085979	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_55_8	3173	Open in IMG/M
3300025915\|Ga0207693_10913715	Not Available	673	Open in IMG/M
3300025928\|Ga0207700_10244697	Not Available	1530	Open in IMG/M
3300025929\|Ga0207664_10158652	All Organisms → cellular organisms → Bacteria	1928	Open in IMG/M
3300025929\|Ga0207664_10196109	All Organisms → cellular organisms → Bacteria	1741	Open in IMG/M
3300025929\|Ga0207664_10312404	Not Available	1385	Open in IMG/M
3300025929\|Ga0207664_10873178	Not Available	808	Open in IMG/M
3300025929\|Ga0207664_11080873	Not Available	717	Open in IMG/M
3300025929\|Ga0207664_11568277	Not Available	580	Open in IMG/M
3300025929\|Ga0207664_11828717	Not Available	530	Open in IMG/M
3300025929\|Ga0207664_11905891	Not Available	517	Open in IMG/M
3300026300\|Ga0209027_1025595	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2235	Open in IMG/M
3300026301\|Ga0209238_1100000	Not Available	984	Open in IMG/M
3300026301\|Ga0209238_1110328	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300026550\|Ga0209474_10247938	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300026550\|Ga0209474_10525410	Not Available	600	Open in IMG/M
3300026552\|Ga0209577_10720173	Not Available	562	Open in IMG/M
3300027587\|Ga0209220_1134907	Not Available	641	Open in IMG/M
3300027635\|Ga0209625_1133959	Not Available	555	Open in IMG/M
3300027986\|Ga0209168_10000849	All Organisms → cellular organisms → Bacteria → Acidobacteria	26881	Open in IMG/M
3300027986\|Ga0209168_10013589	All Organisms → cellular organisms → Bacteria	4757	Open in IMG/M
3300027986\|Ga0209168_10231571	Not Available	918	Open in IMG/M
3300031740\|Ga0307468_101670996	Not Available	598	Open in IMG/M
3300034644\|Ga0370548_060873	Not Available	695	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.47%
Host-Associated	Host-Associated	15.53%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.70%
Plants	Host-Associated → Plants	15.53%
Aquatic	Environmental → Aquatic	7.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.59%
Thermal Springs	Environmental → Aquatic → Thermal Springs	7.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.54%
Loam	Environmental → Terrestrial → Soil → Loam	28.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.62%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	7.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	21.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.62%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	7.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	13.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.62%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	10.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	9.71%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	7.77%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	7.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.94%
Permafrost Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Permafrost Soil	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002915	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007819	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-1-2 Soapdenovo	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_101171694	3300001593	Forest Soil	MTPQPRDWRRVAEEVRDEQDSIKMMALVIELDRLLENEDKSRKRPH*
JGI25387J43893_10180902	3300002915	Grasslands Soil	MTPQPSDWRSLAEQICDEKDSNKMMALVVELDRILEREEKARKRSR*
Ga0058897_111735012	3300004139	Forest Soil	GRFPMTPQPSNRRHEAERICYEKDSNKMMELVFELDRLLECEDKSRKRPH*
Ga0062595_1013580502	3300004479	Soil	MTPQPSNWRSIAEQICDEKDSNKMMALVFELDRLLERDEKFRKRSH*
Ga0066672_103297522	3300005167	Soil	MTPQPSDWRSVAEQISDEKDSNKMMALVVELDRLLEREEKPRKRSH*
Ga0066673_100538592	3300005175	Soil	MTPQSSDWRSLAEQICDEKDSNKMMALVVELDRLLEREEKTRKRSH*
Ga0066679_102135781	3300005176	Soil	MTPQPSDWRSVAEQISDEKDSNKMMALVAELDRLLEREEKARKRSH*
Ga0066684_101110273	3300005179	Soil	MIPMTPQPSDWRSLAEQICDEKDSNKMMALVVELDRLLEREEKTRKRSH*
Ga0066684_111018201	3300005179	Soil	VTPQPRDWRRVAEEVRDEKDSAKMMALVIELDHLLEKEDKARRRPHCRAWMIN*
Ga0070714_10001318110	3300005435	Agricultural Soil	MTPQPRDWRRVAEQVRDEKDSSKMMALVIELDRLLENEDKSRKRPH*
Ga0070714_1001510644	3300005435	Agricultural Soil	MTPQPRDWRRVAEEARDEKDSVKMMALIIELDSLLEKEDKTRRRPH*
Ga0070714_1002752234	3300005435	Agricultural Soil	NQKLKGGLPMTPQPSNWRFVAEQICDEKDSDKMMALVVELDRLLERDEKSRKHQQH*
Ga0070714_1005336393	3300005435	Agricultural Soil	MTPQPRDWRRVAEEVRDEKDSTKMMALFVELDRLLENEDKSRKRPH*
Ga0070714_1005406702	3300005435	Agricultural Soil	MSPQPGDWRSVAEQICDEKDSNKMMALVVELDRLLEREEKARKRSH*
Ga0070714_1008911632	3300005435	Agricultural Soil	MTPQPSDWRSVAEQICDEKDSNKMMALVFELDRLLERDEKFRKRSH*
Ga0070713_1003838622	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTPQQPSNWRPVAEQICDEKDSTKMMALVIELNRLLERDEKSRKQQQQH*
Ga0070710_112230491	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MTPQPRDWRRVAEEVRDEKDSIKMMALVIELDRLLEREDKSRQRPH*
Ga0070710_114820701	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MTPQPSDWRYVAERVCMEKDSNKMIALVMELNRLLEREQSNKRTH*
Ga0066687_105325521	3300005454	Soil	MIPMTPQPSDWRSLAEQICDEKDSNKMMALVVELDRILEREEKARKRSH*
Ga0070735_1000069130	3300005534	Surface Soil	MTPQPRDWRCVAEQIRDERDSKKMMDLVVELDRLLESEDKSRRRPH*
Ga0070735_100045857	3300005534	Surface Soil	MTPQPSNWRSVAEQICDEKNSDKMMALVFELDRLLERDEKARKQQQH*
Ga0070735_1000480014	3300005534	Surface Soil	MTPQPRDWRLVAEQIRDEKDSNKMMELVVELDCLLERDENARKHPHNLCA*
Ga0070735_101158823	3300005534	Surface Soil	MTPQPRDWRSVAEQIADEKNSDKMMALVFELNRLLERDEKSRKHQQQ*
Ga0070735_103327902	3300005534	Surface Soil	MTPQPRTPQPRDWRYVAEQIRDEKDSKKMMDLVVELDRLLESEDKSRRRPHYQLPKL*
Ga0068853_1012015613	3300005539	Corn Rhizosphere	SPMTPQPRDWRRVAEQVRDEKDSSKLMVLVIELNRLLENEDKSRKRPH*
Ga0066670_103971342	3300005560	Soil	MTPQPSDWRSLAEQICDEKDSNKMMALVVELDRLLEREEKARKRSH*
Ga0068855_1020953722	3300005563	Corn Rhizosphere	MTPQPRDWRRVAEQLRDEKDSSKMMALVIELDRLLENEDKSRKRPH*
Ga0066702_101503972	3300005575	Soil	MTPQPSNWRSLAEQICDEKDSNKMMALVVELDRLLEREEKARKRSH*
Ga0066654_103270002	3300005587	Soil	MTPQPSDWRSLAEQICDEKDSNKMMALVVELDRLLEREEKTRKRSH*
Ga0070717_101317263	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTPQPRDWRYVAKQICDERDSNKMMELVVELDRLLEREEKSRKQH*
Ga0070717_110293472	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTPQQPSNWRPVAEQICDEKDSTKMMALVIELNRLLERDEKARKQQQQH*
Ga0066696_102400392	3300006032	Soil	VTPQPRDWRRVAEEVRDEKDSVKMMALVIELDRLLEKEDKSRRRPH*
Ga0066696_107152921	3300006032	Soil	LIPMTPQPSGWRSLAEQICDEKDSNKMMALVVELDRLLEREEKARKRSH*
Ga0073928_1000062676	3300006893	Iron-Sulfur Acid Spring	MTPQPRDWRRVAEEVRDEKDSNKMMALVIELDHLLECEDKSRKRPH*
Ga0073928_1000062842	3300006893	Iron-Sulfur Acid Spring	MTPQPRDWRRVAEEVRDEKDSIKMMALVIELDRLLECEDKSRRRPH*
Ga0073928_1000096857	3300006893	Iron-Sulfur Acid Spring	MTPQPRDWRRVAEEVRDEKDSMKMMALVIELDRLLESEDKSRKRSH*
Ga0104322_1317643	3300007819	Permafrost Soil	MTPQPRDWRRVAEQVCDEKDSIKMMALVIELDHLLENEDKSRKRPH*
Ga0104322_1387132	3300007819	Permafrost Soil	MTPQPNNWRYVAEQICDEKDSIKMMTLVIELDRLLEYEDKSRKPQQH*
Ga0102924_10152277	3300007982	Iron-Sulfur Acid Spring	MTPQPSDWRHVAEQIRDEKDSTKMMALVIELDRLLEREDKSRKPQH*
Ga0105240_100044116	3300009093	Corn Rhizosphere	MTPQPRTPQPSDWRYVAEQIRDEKDSKKMMDLVAELDRLLESEDKSRRRPH*
Ga0105240_100340081	3300009093	Corn Rhizosphere	MTPQPRDWRRVAEQVRDEKDSSKLMVLVIELNRLLENEDKSRKRPH*
Ga0105240_101783583	3300009093	Corn Rhizosphere	MTPQPRDWRRVAEQVRDEKDSSKMMALVIELNRLLENEDKSRKRSH*
Ga0105240_126691251	3300009093	Corn Rhizosphere	TPQPRDWRRVAEQLRDEKDSSKMMALVIELDRLLERDEKFRKRSH*
Ga0105237_106065221	3300009545	Corn Rhizosphere	RTLQPRDWRYVAEQIRDEKDSKKMMDLVVELDRLLESEDKSRRRRY*
Ga0105237_108500162	3300009545	Corn Rhizosphere	MTPQPRDWRRVAEQVRDEKDSSKMMALVIELNRLLENEDMSRKRPH*
Ga0105238_100537413	3300009551	Corn Rhizosphere	MTPQPRDWRRVAEQVRDEKDSNKLMALVIELARLLESEDKSRKRPH*
Ga0134067_104108211	3300010321	Grasslands Soil	MTPQPSDWRSLAEQICDEKDSNKMMALVVELDRILEREEKARKRSH*
Ga0134125_106536742	3300010371	Terrestrial Soil	MTPQPSDWRSVAEQICDEKNSNKMMALVVELDRLFEREEKARKSSH*
Ga0134125_111699391	3300010371	Terrestrial Soil	MTPQPRDWRCVAEQIRDEKDSKKMMALVVELDRLMESEDKSRRRPH*
Ga0134128_124631031	3300010373	Terrestrial Soil	MTPQPRDWRRVAEQLRDEKDSSKMMALVIELDRLLENEDKSRKR
Ga0134128_127290441	3300010373	Terrestrial Soil	MTPQPRTLQPRDWRYVAEQIRDEKDSKKMMDLVVELDRLLESEDKSRRRRY*
Ga0134128_128064702	3300010373	Terrestrial Soil	MTPQPRDWRRVAEEVRDEKDSTKMMALVIELDRLLENEDR
Ga0134126_100286498	3300010396	Terrestrial Soil	MTPQPRDWRCVAEQIRDEKDSKKMMDLVVELDRLLESEDKSRRRPH*
Ga0134126_100819001	3300010396	Terrestrial Soil	MTPQPSDWRLVAAQVRDEKDPNKMMALVIELDRLLERDEKTRKRSR*
Ga0134126_101564082	3300010396	Terrestrial Soil	MTPQPCNWRSIAEQICDEKDSNKMMALVFELDRLLERDEKFRKRSH*
Ga0134126_113290772	3300010396	Terrestrial Soil	MTPQPRDWRRVAEEVRDEKDSTKMMALVIELDRLLENEDRSRKRPHPGRDLAKAWK*
Ga0134127_123715712	3300010399	Terrestrial Soil	QKQKGGFSMTPQPRTLQPRDWRYVAEQIRDEKDSKKMMDLVVELDRLLESEDKSRRRRY*
Ga0150983_123917202	3300011120	Forest Soil	LYSRNTEGRFPMTPQPRTPQPRDWRYVAEQIRDEEDSKKMMELVVELDRLLESEDKSRKRPH*
Ga0150983_143965851	3300011120	Forest Soil	ETRNREGRFPMTPQPRDWRRVAEEVRDEKDSIKMMALVIELDRLLEREDESRKRPH*
Ga0150984_1014251741	3300012469	Avena Fatua Rhizosphere	MTPQPSDWRSIAAQICDEKDSNKMMALVVELDRLLEREEKARKRSH*
Ga0157370_108147461	3300013104	Corn Rhizosphere	KYMTPQPRTPQPSDWRYVAEQIRDEKDSKKMMDLVVELDRLLESDDKSRRRPH*
Ga0157372_104772252	3300013307	Corn Rhizosphere	MTPQPRDWRRVAEQVRDEKDSNKLIALVIELDRLLESEDKSRKRPH*
Ga0066655_102590522	3300018431	Grasslands Soil	MTPQPSDWRSVAEQISDEKDSNKMMALVVELDRLLEREEKTRKRSH
Ga0066667_121649501	3300018433	Grasslands Soil	MTPQPSDWRSLAEQICDEKDSNKMMALVVELDRLLEREEKTRKRSH
Ga0066662_109168591	3300018468	Grasslands Soil	MTPQSSDWRSLAEQICDEKDSNKMMALVVELDRLLEREEKTRKRSH
Ga0193751_10954031	3300019888	Soil	MTPQPRDWRCVAEQICDEKDSIKMMELVVELDRLLEREDKSRKRPH
Ga0210407_102146414	3300020579	Soil	MTPQPSDWRYVAEQICDEKDSNKMMELVVELDRLLEREDKSRKRPH
Ga0210407_105105681	3300020579	Soil	MTPQPRTPQPRDWRYVAEQIRDEEDSKKMMELVVELDRLLESEDKSRKRPH
Ga0210406_101720621	3300021168	Soil	MTPQPRTSQPRDWRYVAEQIRDEKDSKKMMELVVELDRLLESEDKSRKPPH
Ga0210406_103036721	3300021168	Soil	MTPQPSNRRHEAERICYEKDSNKMMELVFELDRLLECED
Ga0210410_103619392	3300021479	Soil	MTPQPRDWRRVAEQVRDEKDSTKMMALVIELDRLLECEDKSRKRPH
Ga0212123_1000050997	3300022557	Iron-Sulfur Acid Spring	MTPQPRDWRRVAEEVRDEKDSMKMMALVIELDRLLESEDKSRKRSH
Ga0212123_1000113061	3300022557	Iron-Sulfur Acid Spring	MTPQPRDWRRVAEEVRDEKDSIKMMALVIELDRLLECEDKSRRRPH
Ga0212123_1000149634	3300022557	Iron-Sulfur Acid Spring	MTPQPRDWRRVAEEVRDEKDSNKMMALVIELDHLLECEDKSRKRPH
Ga0212123_100140255	3300022557	Iron-Sulfur Acid Spring	MTPQPSDWRHVAEQIRDEKDSTKMMALVIELDRLLEREDKSRKPQH
Ga0207692_109868131	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MTPQPRDWRRVAEEVRDEKDSIKMMALVIELDRLLEREDKSRQRPH
Ga0207695_100447851	3300025913	Corn Rhizosphere	MTPQPRDWRRVAEQVRDEKDSSKLMVLVIELNRLLENEDKSRKRPH
Ga0207695_100497494	3300025913	Corn Rhizosphere	MTPQPRDWRRVAEQLRDEKDSSKMMALVIELDRLLENEDKSRKRPH
Ga0207695_100584205	3300025913	Corn Rhizosphere	MTPQPRDWRRVAEQVRDEKDSSKMMALVIELNRLLENEDMSRKRPH
Ga0207695_100859794	3300025913	Corn Rhizosphere	MTPQPRTPQPSDWRYVAEQIRDEKDSKKMMDLVAELDRLLESEDKSRRRPH
Ga0207693_109137151	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTPQPSNWRFVAEQICDEKDSDKMMALVVELDRLLER
Ga0207700_102446973	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTPQQPSNWRPVAEQICDEKDSTKMMALVIELNRLLERDEKSRKQQQQH
Ga0207664_101586522	3300025929	Agricultural Soil	MSPQPGDWRSVAEQICDEKDSNKMMALVVELDRLLEREEKARKRSH
Ga0207664_101961092	3300025929	Agricultural Soil	MTPQPRDWRRVAEEARDEKDSVKMMALIIELDSLLEKEDKTRRRPH
Ga0207664_103124042	3300025929	Agricultural Soil	MTPQPRDWRRVAEQVRDEKDSNKLIALVIELDRLLESEDKSRKRPH
Ga0207664_108731781	3300025929	Agricultural Soil	MTPQPCNWRSIAEQICDEKDSNKMMALVFELDRLLERDEKFRKRSH
Ga0207664_110808731	3300025929	Agricultural Soil	MTPQPSNWRFVAEQICDEKDSDKMMALVVELDRLLERDEKSRKHQQH
Ga0207664_115682771	3300025929	Agricultural Soil	REIEGRFSMTPQPRDWRRVAEEVRDEKDSTKMMALFVELDRLLENEDKSRKRPH
Ga0207664_118287171	3300025929	Agricultural Soil	MTPQPSDWRSVAEQICDEKDSNKMMALVVELDCLLEREEKARKR
Ga0207664_119058911	3300025929	Agricultural Soil	MTPLQPSNWQTVAEQICDEKNSDKMMALVVELDRLLERDEKSRKHQQH
Ga0209027_10255953	3300026300	Grasslands Soil	MTPQPSDWRSLAEQICDEKDSNKMMALVVELDRLLEREEKARKRSH
Ga0209238_11000001	3300026301	Grasslands Soil	MIPMTPQPSDWRSLAEQICDEKDSNKMMALVVELDRILEREEKARKRSH
Ga0209238_11103281	3300026301	Grasslands Soil	MTPQPSDWRSLAEQICDEKDSNKMMALVVELDRILEREEKPRQRSR
Ga0209474_102479381	3300026550	Soil	MTPQPSDWRSVAEQICDEKDSNKMMALVVELDRLLEREEKARKRSH
Ga0209474_105254102	3300026550	Soil	MTPQPSDWRSVAEQISDEKDSNKMMALVVELDRLLEREEKPRKRSH
Ga0209577_107201732	3300026552	Soil	MTPQPSNWRSLAEQICDEKDSNKMMALVVELDRLLEREEKARKRSH
Ga0209220_11349071	3300027587	Forest Soil	MTPQPRDWRRVAEEVRDEKDSIKMMALVIELDRLLECEDKSRKRPH
Ga0209625_11339592	3300027635	Forest Soil	MTPQPSNWRYVAEQICDEKDSNKMMELVFELDRLLEREDKSRKRPH
Ga0209168_1000084930	3300027986	Surface Soil	MTPQPRDWRCVAEQIRDERDSKKMMDLVVELDRLLESEDKSRRRPH
Ga0209168_100135896	3300027986	Surface Soil	MTPQPRDWRLVAEQIRDEKDSNKMMELVVELDCLLERDENARKHPHNLCA
Ga0209168_102315712	3300027986	Surface Soil	MTPQPSNWRSVAEQICDEKNSDKMMALVFELDRLLERDEKARKQQQH
Ga0307468_1016709962	3300031740	Hardwood Forest Soil	MTPQPNNWRYVAEQICDEKDSNKMMALVIELDRLLEREDKSRKPQQH
Ga0370548_060873_29_169	3300034644	Soil	MTPQPRDWRRVAEEVRDEKDSDKMMALVIELDRLLENEDKSRKRPH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098796

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences