Metagenome / Metatranscriptome Family F098725

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Overview

Basic Information
Family ID	F098725
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	111 residues
Representative Sequence	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPQPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPAL
Number of Associated Samples	90
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	3.92 %
% of genes near scaffold ends (potentially truncated)	96.12 %
% of genes from short scaffolds (< 2000 bps)	94.17 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater (33.010 % of family members)
Environment Ontology (ENVO)	Unclassified (83.495 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (76.699 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156.158.160 1B570J29600_1087002 2B570J29612_10001374 3B570J29611_10077381 4Ga0007872_10105312 5Ga0007795_101885572 6Ga0007827_101118001 7Ga0007827_101504481 8Ga0007801_102290441 9Ga0007854_103795591 10Ga0007854_104793081 11Ga0007809_102259001 12Ga0071351_10886042 13Ga0071350_14750722 14Ga0068881_15425301 15Ga0068883_10069461 16Ga0007881_11413872 17Ga0007813_11107161 18Ga0007882_103147372 19Ga0007862_10210981 20Ga0007870_10511862 21Ga0007858_10677541 22Ga0007815_10586573 23Ga0007816_11207162 24Ga0007807_10651952 25Ga0007807_11099421 26Ga0007867_11003992 27Ga0007824_10487313 28Ga0007837_10363961 29Ga0102689_18419902 30Ga0114338_12687041 31Ga0114339_12486231 32Ga0114342_10702721 33Ga0114342_11334642 34Ga0114342_11701491 35Ga0114344_12518681 36Ga0114345_10071985 37Ga0114345_10182781 38Ga0114345_12035381 39Ga0114345_13273211 40Ga0114336_12381181 41Ga0103700_1009161 42Ga0114972_106427831 43Ga0114982_11112552 44Ga0114960_104549201 45Ga0157575_1029562 46Ga0157571_10036671 47Ga0157578_11129182 48Ga0157593_10214452 49Ga0157562_11624832 50Ga0157596_11662402 51Ga0157574_11698312 52Ga0157595_10635051 53Ga0157599_11048131 54Ga0157602_12977072 55Ga0138281_11079702 56Ga0164293_104163121 57Ga0164292_108427441 58Ga0180039_10184331 59Ga0208464_1119942 60Ga0208721_10163061 61Ga0207942_10270941 62Ga0214169_1091121 63Ga0214194_1016484 64Ga0214197_10215161 65Ga0214200_10695051 66Ga0214172_10456882 67Ga0214205_1196081 68Ga0214199_10129551 69Ga0247724_10127691 70Ga0208504_10205122 71Ga0208256_10209581 72Ga0208614_10587161 73Ga0208746_10333412 74Ga0208105_10834081 75Ga0208249_11288571 76Ga0208104_10182331 77Ga0208388_10336872 78Ga0208867_10117022 79Ga0208872_12878951 80Ga0209599_101824281 81Ga0209107_101595201 82Ga0209401_11518142 83Ga0316223_11791782 84Ga0316222_11806222 85Ga0334996_0403370_1_300 86Ga0334996_0527308_1_345 87Ga0334996_0548950_2_319 88Ga0334986_0493032_3_341 89Ga0334986_0613229_2_349 90Ga0334985_0523629_263_676 91Ga0334985_0656358_260_574 92Ga0335002_0451325_300_698 93Ga0334987_0054216_2864_3304 94Ga0334987_0567683_2_427 95Ga0334995_0483734_492_749 96Ga0310127_128462_3_428 97Ga0310130_0160809_3_209 98Ga0335033_0468779_367_606 99Ga0335053_0489405_451_726 100Ga0335054_0094143_1408_1842 101Ga0335049_0508410_2_379 102Ga0335052_0677905_2_457 103Ga0335013_0085865_1999_2223
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156.158.160 1B570J29600_1087002 2B570J29612_10001374 3Ga0007801_102290441 4Ga0007870_10511862 5Ga0102689_18419902 6Ga0114342_10702721 7Ga0114345_10071985 8Ga0114345_10182781 9Ga0247724_10127691 10Ga0335013_0085865_1999_2223
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156.158.160 1B570J29600_1087002 2B570J29612_10001374 3Ga0007801_102290441 4Ga0007870_10511862 5Ga0102689_18419902 6Ga0114342_10702721 7Ga0114345_10071985 8Ga0114345_10182781 9Ga0247724_10127691 10Ga0335013_0085865_1999_2223
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.64% β-sheet: 0.00% Coil/Unstructured: 76.36%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002364\|B570J29600_108700	Not Available	500	Open in IMG/M
3300002397\|B570J29612_1000137	Not Available	6180	Open in IMG/M
3300002401\|B570J29611_1007738	Not Available	931	Open in IMG/M
3300003826\|Ga0007872_1010531	Not Available	888	Open in IMG/M
3300004773\|Ga0007795_10188557	Not Available	574	Open in IMG/M
3300004777\|Ga0007827_10111800	Not Available	612	Open in IMG/M
3300004777\|Ga0007827_10150448	Not Available	518	Open in IMG/M
3300004802\|Ga0007801_10229044	Not Available	519	Open in IMG/M
3300004806\|Ga0007854_10379559	Not Available	577	Open in IMG/M
3300004806\|Ga0007854_10479308	Not Available	502	Open in IMG/M

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Environmental Properties

Associated Habitat Types

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Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	95.15%
Terrestrial	Environmental → Terrestrial	4.85%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	4.85%
Freshwater	Environmental → Aquatic → Freshwater	95.15%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	44.66%
Lentic	Environmental → Aquatic → Freshwater → Lentic	50.49%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	4.85%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	10.68%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	2.91%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	44.66%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	36.89%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	4.85%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	1.94%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.97%
Fracking Water	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water	1.94%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	33.01%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	29.13%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	10.68%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	1.94%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	0.97%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	3.88%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	2.91%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	10.68%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton	0.97%
Lake Water	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water	0.97%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002364	Freshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion	Environmental	Open in IMG/M
3300002397	Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns	Environmental	Open in IMG/M
3300002401	Freshwater microbial communities from Lake Mendota, WI - 26JUN2009 deep hole epilimnion	Environmental	Open in IMG/M
3300003826	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29Jul08	Environmental	Open in IMG/M
3300004773	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA1M	Environmental	Open in IMG/M
3300004777	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Jul07	Environmental	Open in IMG/M
3300004802	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2M	Environmental	Open in IMG/M
3300004806	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08	Environmental	Open in IMG/M
3300004807	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug07	Environmental	Open in IMG/M
3300005044	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J29600_1087002	3300002364	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPQTELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVS
B570J29612_10001374	3300002397	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPQTELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPAPPANAKTTNVGSNITTTDVPSAAA*
B570J29611_10077381	3300002401	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPAKLANEPAKSKTPAPTPMLRP
Ga0007872_10105312	3300003826	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAHKEQKVSEPV
Ga0007795_101885572	3300004773	Freshwater	MNPSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPTPELQQQQRNTNASSLESILKGKVIKEFVPMAHKEQKVSEPVKLANEPAKSKTPAPPPM
Ga0007827_101118001	3300004777	Freshwater	NSSEDKRSFKRKKPFVNNGFRKPMLQEPRSRISHPQPPSAPKRPNNNSDFTKPELQQQQRNTNTSSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTLLFRQC*
Ga0007827_101504481	3300004777	Freshwater	MNSNEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKISEPAKLANEPAKSKTPAPTPMLRPPMLVRTSRPPMFHQQQHRPL
Ga0007801_102290441	3300004802	Freshwater	MQQEPRSRISHPQPPSAAKRPNNSSDFNKSTPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVPEPVKLANEPAKSKTTAPPPMLRPPMLVRTSRPPMFHQQQHRP
Ga0007854_103795591	3300004806	Freshwater	MNPSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISYPQPPSAAKRPNNNSDFNKPTSELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPA
Ga0007854_104793081	3300004806	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKE
Ga0007809_102259001	3300004807	Freshwater	MNSNEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPAPPPMLRPPMLVRTSRPPMFHQQQH
Ga0071351_10886042	3300005044	Freshwater, Plankton	MNSSEDKRSFKRKKPFVNNGFRKPMLQEPRSRISHPQPPSAPKRPNNNSDFTKPELQQQQRNTNTSSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTP
Ga0071350_14750722	3300005069	Freshwater	MNSSEDKRSFKRKKPFVNNGSRKPMHQEPRSRISHPQPPSAAKRPNNSPDFNKSTTELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEP
Ga0068881_15425301	3300005418	Freshwater Lake	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPQPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPAL
Ga0068883_10069461	3300005419	Freshwater Lake	MNSSEDKRSFKRKKPFVNNGFRKPMLQEPRSRISHPQPPSAAKRPNNNSDFNKPQTELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPALPPMLRPPMLVRTSRPPMFHQQQHRPLRQ
Ga0007881_11413872	3300006072	Freshwater	MLQEPRSRISHPQPPSAPKRPNNNSDFTKPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPALPPMLRPPMLVRTSRPPMFHQQQHRPLRQ
Ga0007813_11107161	3300006103	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPM
Ga0007882_103147372	3300006104	Freshwater	MNSNEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKISEPAKLANEPAKSKTPAPTPMLRPPMLVRTSRPPMFHQQQHRPL
Ga0007862_10210981	3300006108	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFTKPELQQQQRNTNASSLESILKGKVIKEFVPMA
Ga0007870_10511862	3300006109	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISYPQPPSAAKRPNNNSDFNKPTSELQQQQRNTNA
Ga0007858_10677541	3300006113	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPTPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLA
Ga0007815_10586573	3300006114	Freshwater	MNSNEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQK
Ga0007816_11207162	3300006115	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISYPQPPSAAKRPNNNSDFNKPTSELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPA
Ga0007807_10651952	3300006116	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPLPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKAKHPLFRQC*
Ga0007807_11099421	3300006116	Freshwater	MNSNEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKT
Ga0007867_11003992	3300006120	Freshwater	MNSNEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKISEPAKLANEPAKSKTPAPTPMLRPPMLVRTS
Ga0007824_10487313	3300006121	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANE
Ga0007837_10363961	3300006122	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPTPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPALPPM
Ga0102689_18419902	3300007304	Freshwater Lake	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPQPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPALPPMLRPPMLVRTSRPPMFNQQQHRPLRQHFQPPYRQPPP
Ga0114338_12687041	3300008105	Freshwater, Plankton	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNSSDFNKSTTELQQQQRNTNASSLESILKGKVIKEFVPMAQKEHKVSEPVKLANEPAKSKTTAPPPMLRPPMLVRTSRPSMF
Ga0114339_12486231	3300008106	Freshwater, Plankton	MNSSEDKRSFKRKKPFVNNGFRKPMLQEPRSRISHPQPPSAAKRPNNNSDFNKPTPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPALPPILRPPMLVRTLRPPMFHQQQHRPLRQHFQP
Ga0114342_10702721	3300008109	Freshwater, Plankton	MNSNDKKPFKRKKPFVNNGFRKPTHPEPRSRVSYPQQPPTAAKRPNNSSDFTKPPPELQQQQ
Ga0114342_11334642	3300008109	Freshwater, Plankton	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNSSDFNKSTTELQQQQRNTNASSLESILKGKVIKEFVPMAQKEHKVSEPVKLANEPAKSKTTAPPPMLRPPMLVRTSRPSMFHQQQHRPLRQPYQPPYRQ
Ga0114342_11701491	3300008109	Freshwater, Plankton	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFTKPELQQQQQRNTNASSLESILK*KVIKEFVPMAQKEQKVSEPVKLAN
Ga0114344_12518681	3300008111	Freshwater, Plankton	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPQTELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKS
Ga0114345_10071985	3300008112	Freshwater, Plankton	MNSNEKKPFKRKKPFVNNGFRKPTHPEPRSRVSYPQQPPTAAKRPNNSSDFTKPPPELQQQQQQRNTNIPSLEIILKGKVIKEFVPMA*
Ga0114345_10182781	3300008112	Freshwater, Plankton	DSKKPFKHKKPYFNNGFRKPMPQEPRSCISYPQPPTAAKRPNTSLDFTKTPPELPQSNKNTESLESILKGKVIKEFVPQAQKRAKGF*
Ga0114345_12035381	3300008112	Freshwater, Plankton	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNSSDFNKSPPELQQQQRNTNASSLESILKGKVIREFVPMAQKEQKVSEPVKLANEPAKSKTPAPTPMLRPPMLVRTSRPPMFHQQQHRPLRQHFQPPYRQPP
Ga0114345_13273211	3300008112	Freshwater, Plankton	MNSSEDKRSFKRKKPFVNNGFRKPMLQEPRSRISHPQPPSAAKRPNNSSDFNKPTPDLQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVS
Ga0114336_12381181	3300008261	Freshwater, Plankton	MNPSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELHQQRNTNASSLESILKGKVIKEFVPMAQKEQKVPEPVKLANEPAKSKTPALPPILRPTMLVRTSPPPMFHQQHHRPLRQHFQPPYR
Ga0103700_1009161	3300008794	Lake Water	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPQPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPALPPMLRPPMLVRTSRPPMFHQQQHRPLRQHFQPPYRQPPP
Ga0114972_106427831	3300009187	Freshwater Lake	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPQTELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVK
Ga0114982_11112552	3300009419	Deep Subsurface	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISYPQPPSAAKRPNNSSDFNKSTPELQQQQRNTNASSLESILKGKVIKEFVPMAQKELKVSEPVKLANEPAKSKTPALPPMLR
Ga0114960_104549201	3300010158	Freshwater Lake	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPQTELQQQQRNTNASSLESILKGKVIKEFVPM
Ga0157575_1029562	3300012690	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFTKPELQQQQRNTNSSSLESILKGKVIKEFVPMAQKEQKVPEPAKLANEPAKSKTTALPPMLRPPMLVRTSRPPMFHQQQHRPLRQPFQ
Ga0157571_10036671	3300012692	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPTPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEP
Ga0157578_11129182	3300012697	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILK
Ga0157593_10214452	3300012699	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNSYDFYKPTPDLQQQQRNTNASSLESIL
Ga0157562_11624832	3300012701	Freshwater	MNSSEDKRSFKRKKLFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPTPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPAPPPMLRPPMLVRTSRPPMFHQQQHRPLRQHFQPPYRQPP
Ga0157596_11662402	3300012702	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNATSLESILKGKVIKEFVPMA
Ga0157574_11698312	3300012704	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFTKPELQQQQRNTNTSSLESILKGKVIKEFVPMAQKEQKVSE
Ga0157595_10635051	3300012708	Freshwater	MNPSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSSLESILKGKVIKE
Ga0157599_11048131	3300012715	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHLQPPSAAKRPNNNSDFNKPQTELQQQQRNTNASSLES
Ga0157602_12977072	3300012730	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAK
Ga0138281_11079702	3300012755	Freshwater Lake	MNPSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNSSDFNKSTTELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPALP
Ga0164293_104163121	3300013004	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPQIELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVRLANEPAKSKTPAPPPMLRPPMLVRTSRPPMFHQQQHRPLRQHFQ
Ga0164292_108427441	3300013005	Freshwater	MNPNDKKPFKCKKPFVNNGFRKPMQPEPRSCISYLQPPTAAKRPNNNSDFTKPELQQQQRNTNASSLESILKGKVIKEFVPMAQKE
Ga0180039_10184331	3300016688	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMLQEPRSRISHPQPPSAPKRPNNNSDFTKPELQQQQRNTNTSSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTSALPPMLRPSMLVRTSR
Ga0208464_1119942	3300020482	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPTPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPAPTPMLR
Ga0208721_10163061	3300020518	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPTPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPAPTPMLRPPMLVRTSR
Ga0207942_10270941	3300020549	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKL
Ga0214169_1091121	3300020677	Freshwater	MNSNEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKISEPAKLANEPAKSKTPAPTPMLRPPMLVRTSRPPMFHQQQYRPLRQHFQPPYR
Ga0214194_1016484	3300020686	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPTPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPAPPPMLRPSMLVRTSRPPMFHQQQHRP
Ga0214197_10215161	3300020694	Freshwater	MNSNEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKISEPAKLANEPAKSKTPAPTPMLRPPMLVRTSR
Ga0214200_10695051	3300020725	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFTKPELQQQQRNTNSSSLESILKGKVIKEFVPMAQKEQK
Ga0214172_10456882	3300020733	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKLMHQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPAPPP
Ga0214205_1196081	3300021118	Freshwater	MNSNEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKISEPAKLANEPAKSKTPAPTPMLRPPMLVRTSRPPMFHQQQHRPLRQHF
Ga0214199_10129551	3300021124	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPTPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKISEPAKLANEPAKSKTPAPTPML
Ga0247724_10127691	3300024239	Deep Subsurface Sediment	MQPKPRSRIAHPQPSLAAKRPNNNSDFTKPPPELQKQQSNVNTPPLEVILKGKVIKEFVPMAQKEQNASEPKKLTNEPAKSATPAPQPILRPSMLIRTSRPPMFQQQQPSPLRQPL
Ga0208504_10205122	3300025358	Freshwater	MNSNEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPSKSKTPAPSPMLRPPMLV
Ga0208256_10209581	3300025382	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEP
Ga0208614_10587161	3300025413	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFTKPELQQQQRNTNSSSLESILKGKVIKEFVPMAQKEQKVPEPVKLANEPAKSKTPALPPILRPPMLVRTSRPPMFHQQQHRPLRQHFQPPYR
Ga0208746_10333412	3300025423	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSL
Ga0208105_10834081	3300025487	Freshwater	MNSNEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPAKLANEPAKSKTPAPTPMLRPPMLVRTSRPPMF
Ga0208249_11288571	3300025532	Freshwater	MNPSEDKKSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPTPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPSK
Ga0208104_10182331	3300025773	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPTPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVK
Ga0208388_10336872	3300025778	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKE
Ga0208867_10117022	3300025782	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMLQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPALPPMLRPPMLV
Ga0208872_12878951	3300025838	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPALPPMLRPPML
Ga0209599_101824281	3300027710	Deep Subsurface	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNSSDFNKSTPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPALPPMLXPPM
Ga0209107_101595201	3300027797	Freshwater And Sediment	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPQPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQK
Ga0209401_11518142	3300027971	Freshwater Lake	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPALPPMLRPPMLV
Ga0316223_11791782	3300032560	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEP
Ga0316222_11806222	3300032561	Freshwater	MNSNEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHLQPPSAAKRPNNNSDFTKPELQQQQRNTNSSSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTTAPPPMLRPPMLVRTSRPPMFHQQQHRPLRQHFQPPYRQPPP
Ga0334996_0403370_1_300	3300033994	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQRNANASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANE
Ga0334996_0527308_1_345	3300033994	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPAKLANEPAKSKTPAPTPMLR
Ga0334996_0548950_2_319	3300033994	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMLQEPRSRISHPQPPSAAKRPNNNSDFTKPELQQQQRNTNSSSLESILKGKVIKEFVPMAQKEQKVPEPVKLANEPAKSKTP
Ga0334986_0493032_3_341	3300034012	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPQTELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPALPPM
Ga0334986_0613229_2_349	3300034012	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMLQEPRSRISHPQPPSAPKRPNNNSDFTKPELQQQQRNTNTSSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPALPPMLRPPM
Ga0334985_0523629_263_676	3300034018	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPAKLANEPAKSKTPAPTPMLRPPMLVRTSRPPMFHQQQHRPLRQ
Ga0334985_0656358_260_574	3300034018	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNSSDFNKSTPELQQQQRYTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKS
Ga0335002_0451325_300_698	3300034020	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPAKLANEPAKSKTPAPTPMLRPPMLVRTSRPPMFHQQQH
Ga0334987_0054216_2864_3304	3300034061	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPQTELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPALPPMLRPPMLVRTSRPPMFHQQQHRPLRQHFQPPYRQP
Ga0334987_0567683_2_427	3300034061	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQRNANASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPAPTPMLRPPMLVRTSRPPMFHQQQHRPLRQHFQPP
Ga0334995_0483734_492_749	3300034062	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMA
Ga0310127_128462_3_428	3300034072	Fracking Water	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPAPTPMLRPPMLVRTSRPPMFHQQQHRPLRQHFQP
Ga0310130_0160809_3_209	3300034073	Fracking Water	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASS
Ga0335033_0468779_367_606	3300034117	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMLQEPRSRISHPQPPSAAKRPNNNSDFTKPELQQQQRNTNSSSLESILKGKVIKEF
Ga0335053_0489405_451_726	3300034118	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQRNANASSLESILKGKVIKEFVPMAQKEQKVS
Ga0335054_0094143_1408_1842	3300034119	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMHQEPRSRISHPQPPSAAKRPNNNSDFNKPPPELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPAPTPMLRPPMLVRTSRPPMFHQQQHRPLRQHFQPPYR
Ga0335049_0508410_2_379	3300034272	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMLQEPRSRISHPQPPSAPKRPNNNSDFTKPELQQQQRNTNTSSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPALPPMLRPPMLVRTSRPPML
Ga0335052_0677905_2_457	3300034279	Freshwater	MNSSEDKRSFKRKKPFVNNGFRKPMQQEPRSRISHPQPPSAAKRPNNNSDFNKPQTELQQQQRNTNASSLESILKGKVIKEFVPMAQKEQKVSEPVKLANEPAKSKTPALPPMLRPPMLVRTSRPPMFHQQQHRPLRQHFQPPYRQPPPIRP
Ga0335013_0085865_1999_2223	3300034284	Freshwater	MNPNDKKPFKRKKPFVNNGFRKPMQPEPRSRISYPQPPTAAKRPNNSSDFNKPPPELQHQQHNTNTPSLEVILKG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098725

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences