Metagenome / Metatranscriptome Family F098653

Basic Information
Family ID	F098653
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	68 residues
Representative Sequence	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVFNVDYYNKWTNFNEGLLNKIRDYKKYN
Number of Associated Samples	74
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	22.33 %
% of genes from short scaffolds (< 2000 bps)	56.31 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (60.194 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (29.126 % of family members)
Environment Ontology (ENVO)	Unclassified (59.223 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (66.990 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80. 1BS_KBA_SWE12_21mDRAFT_100370245 2BS_KBA_SWE12_21mDRAFT_100436993 3JGI12421J11937_1000790610 4JGI12421J11937_100089589 5JGI12421J11937_100685054 6JGI25908J49247_100021417 7JGI25908J49247_101216062 8JGI25910J50241_1000114711 9JGI25910J50241_100429683 10JGI25910J50241_101040031 11JGI25909J50240_10193171 12JGI25907J50239_10021181 13JGI25907J50239_10107691 14JGI25920J50251_100745151 15Ga0066179_100716241 16Ga0007753_14106931 17Ga0070374_104548171 18Ga0049083_101682942 19Ga0049081_100637871 20Ga0049085_100062978 21Ga0049082_100022548 22Ga0049084_100157589 23Ga0105747_12800841 24Ga0114343_100043258 25Ga0114364_11067711 26Ga0114973_101400092 27Ga0102814_107394891 28Ga0114918_100190399 29Ga0114968_100956002 30Ga0114966_1000002524 31Ga0114971_100729834 32Ga0114967_100401887 33Ga0151515_1073028 34Ga0153697_133717 35Ga0153800_10155972 36Ga0153805_10085603 37Ga0177922_102550752 38Ga0181338_10410722 39Ga0181350_11045653 40Ga0181350_11134822 41Ga0181357_11302473 42Ga0181349_100593512 43Ga0181355_12196243 44Ga0181361_1010611 45Ga0181361_1057522 46Ga0181359_10040398 47Ga0181359_10120955 48Ga0181359_10401411 49Ga0211729_103268091 50Ga0211729_1042403910 51Ga0214919_1001425413 52Ga0210003_10319855 53Ga0208966_10030531 54Ga0208974_10848092 55Ga0208951_10028648 56Ga0208951_11643002 57Ga0208951_11765432 58Ga0208942_100184210 59Ga0208960_100322318 60Ga0208975_10612681 61Ga0209443_10420564 62Ga0209190_10341367 63Ga0209355_10435171 64Ga0209355_10581935 65Ga0209597_10178206 66Ga0209597_10481691 67Ga0209596_12761251 68Ga0209768_100810814 69Ga0209768_102474913 70Ga0209768_103628461 71Ga0209107_101453814 72Ga0209107_104420262 73Ga0209230_104366282 74Ga0209550_108055161 75Ga0209401_10243765 76Ga0307380_1009990810 77Ga0307380_102382901 78Ga0307380_113191012 79Ga0307379_1001712416 80Ga0307379_103350763 81Ga0307376_108116422 82Ga0307377_1003353912 83Ga0315291_101345495 84Ga0315293_101304564 85Ga0315293_106708122 86Ga0315288_101604183 87Ga0315288_112843713 88Ga0315290_103352741 89Ga0315909_1000312022 90Ga0315294_101936044 91Ga0315294_106715521 92Ga0315294_106899511 93Ga0315294_107506652 94Ga0315274_1003358512 95Ga0315289_103616522 96Ga0315284_1005240711 97Ga0315292_101398403 98Ga0315292_108627513 99Ga0315276_113460683 100Ga0315270_102866292 101Ga0334989_0003516_336_548 102Ga0335007_0010920_2941_3150 103Ga0335007_0068382_1059_1271
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80. 1BS_KBA_SWE12_21mDRAFT_100370245 2Ga0070374_104548171 3Ga0114966_1000002524 4Ga0307380_102382901
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80. 1BS_KBA_SWE12_21mDRAFT_100370245 2Ga0070374_104548171 3Ga0114966_1000002524 4Ga0307380_102382901
Powered by MSAViewer

Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.54% β-sheet: 27.54% Coil/Unstructured: 44.93%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF04851	ResIII	8.74
PF11753	DUF3310	2.91
PF02617	ClpS	1.94
PF02195	ParBc	1.94
PF01541	GIY-YIG	0.97
PF13532	2OG-FeII_Oxy_2	0.97
PF00271	Helicase_C	0.97
PF00850	Hist_deacetyl	0.97
PF01396	zf-C4_Topoisom	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0123	Acetoin utilization deacetylase AcuC or a related deacetylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.94
COG2127	ATP-dependent Clp protease adapter protein ClpS	Posttranslational modification, protein turnover, chaperones [O]	1.94

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.17 %
Unclassified	root	N/A	38.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.19 %
Unclassified	root	N/A	38.83 %
Viruses	superkingdom	All Organisms → Viruses	0.97 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %
Unclassified	root	N/A	38.83 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	33.98 %
Unclassified	root	N/A	38.83 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %
Unclassified	root	N/A	38.83 %
unclassified Spirochaetota	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota	33.98 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	33.98 %
Unclassified	root	N/A	38.83 %

Name	Rank	Taxonomy	Distribution
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	33.98 %
Unclassified	root	N/A	38.83 %

Name	Rank	Taxonomy	Distribution
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	33.98 %
Unclassified	root	N/A	38.83 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	33.98 %
Unclassified	root	N/A	38.83 %
unclassified Bacteroidales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales	0.97 %

Name	Rank	Taxonomy	Distribution
Bacteroidales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	33.98 %
Unclassified	root	N/A	38.83 %

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000124\|BS_KBA_SWE12_21mDRAFT_c10037024	Not Available	1386	Open in IMG/M
3300000124\|BS_KBA_SWE12_21mDRAFT_c10043699	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1237	Open in IMG/M
3300000756\|JGI12421J11937_10007906	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	4156	Open in IMG/M
3300000756\|JGI12421J11937_10008958	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	3881	Open in IMG/M
3300000756\|JGI12421J11937_10068505	Not Available	1073	Open in IMG/M
3300003277\|JGI25908J49247_10002141	All Organisms → cellular organisms → Bacteria	6308	Open in IMG/M
3300003277\|JGI25908J49247_10121606	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	618	Open in IMG/M
3300003388\|JGI25910J50241_10001147	All Organisms → cellular organisms → Bacteria	9373	Open in IMG/M
3300003388\|JGI25910J50241_10042968	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1450	Open in IMG/M
3300003388\|JGI25910J50241_10104003	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M

Showing 1 to 10 of 103 entries

Previous1 2 3 4 5…11Next

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	93.20%
Terrestrial	Environmental → Terrestrial	6.80%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	87.38%
Marine	Environmental → Aquatic → Marine	5.83%
Soil	Environmental → Terrestrial → Soil	6.80%

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	6.80%
Coastal	Environmental → Aquatic → Marine → Coastal	0.97%
Ice	Environmental → Aquatic → Freshwater → Ice	0.97%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.97%
Lake	Environmental → Aquatic → Freshwater → Lake	36.89%
Lentic	Environmental → Aquatic → Freshwater → Lentic	47.57%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.97%
Oceanic	Environmental → Aquatic → Marine → Oceanic	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.97%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.94%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.97%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	4.85%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	16.50%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.94%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	42.72%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	20.39%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	6.80%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	1.94%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.97%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.97%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.85%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.88%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.97%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.97%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	4.85%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.97%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	29.13%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	9.71%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	12.62%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	1.94%
Marine	Environmental → Aquatic → Marine → Wetlands → Sediment → Marine	1.94%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	16.50%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	6.80%
Surface Ice	Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice	0.97%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000124	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 12_21m	Environmental	Open in IMG/M
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003388	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN	Environmental	Open in IMG/M
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental	Open in IMG/M
3300003394	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN	Environmental	Open in IMG/M
3300003404	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD	Environmental	Open in IMG/M
3300004126	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (version 2)	Environmental	Open in IMG/M
3300004786	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DN (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005517	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)	Environmental	Open in IMG/M

Showing 1 to 10 of 74 entries

Previous1 2 3 4 5…8Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
BS_KBA_SWE12_21mDRAFT_100370245	3300000124	Marine	MCNTITSVLGFNLDAEITDNEGNVLASGTTCNYIPEEKPNYVYNTNYSKWTNFNEGLLNKIRDYRKYN*
BS_KBA_SWE12_21mDRAFT_100436993	3300000124	Marine	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPDYVFNTNYSKWTNFNKNLLDKIRDYQKYN*
JGI12421J11937_1000790610	3300000756	Freshwater And Sediment	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVFNVDYYNKWTNFNEGLLNKIRDYQKYN*
JGI12421J11937_100089589	3300000756	Freshwater And Sediment	MCNTITSVLGFDLNAEITDNEGNVLASGTTCNFIPEGKPDYVYNTNYSKWTNFNTGLLDKIKDYQKYNL*
JGI12421J11937_100685054	3300000756	Freshwater And Sediment	MFNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVYNTNYSKWTNFNEGLLNKIRDYQKYN*
JGI25908J49247_100021417	3300003277	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVYNTNYSKWTNFNEGLLNKIRDYQKYN*
JGI25908J49247_101216062	3300003277	Freshwater Lake	SINYLCYFCIMCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPDYMFNNNTYSKWTNFNEGLLNKIRDYKKYN*
JGI25910J50241_1000114711	3300003388	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPKEKPDYMFNTNNYSKWTNFNEGLLNKIRDYKKYN*
JGI25910J50241_100429683	3300003388	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVYNTTYSKWTNFNEGLLNKIRDYQKYN*
JGI25910J50241_101040031	3300003388	Freshwater Lake	MCDTITSVLGFDLDAEITDNEGNVIRSGTKCNYIPENKPDYMFNSNIYYKWTNFNQDLLNKIKDYKKYN*
JGI25909J50240_10193171	3300003393	Freshwater Lake	TITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPDYMFNNNTYSKWTNFNEGLLNKIRDYKKYN*
JGI25907J50239_10021181	3300003394	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPDYMFNNNTYSKWTNFNEGLLNKIRDYKKYN*
JGI25907J50239_10107691	3300003394	Freshwater Lake	YSINYLCYFCIMCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVYNTNYSKWTNFNEGLLNKIRDYQKYN*
JGI25920J50251_100745151	3300003404	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNILASGTTCNYIPEEKPNYVYNTNYSKWTNFNEGLLNKIRD
Ga0066179_100716241	3300004126	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVIASGTKCNYIPENKPDYVFNIDYYNKWTNFNTGLLDKIRDYQKYNM*
Ga0007753_14106931	3300004786	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVFNVDYYNKWTNFNEGLLNKIR
Ga0070374_104548171	3300005517	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVIASGTKCNYIPENKPDYVFNIDYYNKWTNFNTALLDKIRD
Ga0049083_101682942	3300005580	Freshwater Lentic	MCNIITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVFNVDYYNKWTNFNEGLLNKIRDYKKYN*
Ga0049081_100637871	3300005581	Freshwater Lentic	NTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVFNVDYYNKWTNFNEGLLNKIRDYKRYN*
Ga0049085_100062978	3300005583	Freshwater Lentic	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVFNVDYYNKWTNFNEGLLNKIRDYRKYN*
Ga0049082_100022548	3300005584	Freshwater Lentic	MCNTITSVLGFDLDAEITDNEGNVIPSGTTCNYIPEEKPDYVFNVDYYNKWTNFNEGLLNKIRDYRKYN*
Ga0049084_100157589	3300005585	Freshwater Lentic	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYMFNNHTYSKWTNFNEGLLNKIRDYKKYN*
Ga0105747_12800841	3300007974	Estuary Water	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPDYVFNIDYYNKWTNFNEG
Ga0114343_100043258	3300008110	Freshwater, Plankton	MCNTITSVLGFDLDAEITDNEGNVIASGTTCNYIPENKPDYVFNVDYYNKWTNFNEGLLNKIRDYRKYNL*
Ga0114364_11067711	3300008267	Freshwater, Plankton	MCNTITSVLGFDLDAEITDNEGNVIASGTKCNYIPENKPDYIFNVDYYNKWTNFNTGLLDKIRDYQKYNL*
Ga0114973_101400092	3300009068	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVIASGTTCNYIPEEKPNYVYNTNYSKWTNFNKDLLNKIRDYQKYN*
Ga0102814_107394891	3300009079	Estuarine	TSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYIFNVDYYNKWTNFNTGLLDKIRDYQKYNL*
Ga0114918_100190399	3300009149	Deep Subsurface	MCNTITSVLGFDLDAEITDNEGNVIASGTTCNYIPEEKPDYVFNIDYYNKWTNFNEGLLNKIRDYKKYN*
Ga0114968_100956002	3300009155	Freshwater Lake	MCNTITSVLGFDLNAEITDNEGNVLASGTTCNYIPENKPDYVFNVDYYNKWTNFDEGLLNKIRDYKRYN*
Ga0114966_1000002524	3300009161	Freshwater Lake	MDKNIIYSVLGFDLDAEITDNEGNVIASGTTCNYIPKETPHYSCNVDYYNKWTNFNTDLLSKIRDYKRRNT*
Ga0114971_100729834	3300009185	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKANYVFNVDYYNKWTNFNEGLLNKIRDYKKYN*
Ga0114967_100401887	3300010160	Freshwater Lake	MCNTITSVLGFDLNAEITDNEGNVLASGTTCNYIPENKPDYVFNVDYFNKWTNFDEGLLNKIRDYKRYN*
Ga0151515_1073028	3300011114	Freshwater	MCNTITSVLGFDLDAEITDNEGNVIPSGTTCNYIPEEKPDYVFNIDYYNKWTNFNEGLLNKIRDYKKYN*
Ga0153697_133717	3300011334	Freshwater	MCNTITSVLGFDLDAEITDNEGNVIPSGTKCNYIPEEKPDYVFNIDYYNKWTNFNEGLLNKIRDYKKYNM*
Ga0153800_10155972	3300011995	Freshwater	CNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPDYMFNNNTYSKWTNFNEGLLNKIKDYKKYN*
Ga0153805_10085603	3300012013	Surface Ice	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPDYMFNNNTYSKWTNFNEGLLNKIKDYKKYN*
Ga0177922_102550752	3300013372	Freshwater	MCNTITSVIGFDLDAEITDNEGNVIPSGTTCSYIPEEKPNYVYNTNYSKWTNFNEGLLNKIRDYQKHN*
Ga0181338_10410722	3300015050	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVLASGTKCNYIPENKPDYVFNIDYYNKWTNFNTALLDKIRDYQKYNM*
Ga0181350_11045653	3300017716	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNILASGTTCNYIPEEKPNYVYNTNYSKWTNFNEGLLNKIRDY
Ga0181350_11134822	3300017716	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVYNTNYSKWTNFNKGLLNKIRDYQKYN
Ga0181357_11302473	3300017777	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVYNTNYSKWTNFNEGLLNKIRDYQKYN
Ga0181349_100593512	3300017778	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVLASGTNCNYIPEEKPNYVYNTNYSKWTNFNEGLLNKIRDYKKYN
Ga0181355_12196243	3300017785	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNILASGTTCNYIPEEKPNYVYNTNYSKWTNFNEGLLNK
Ga0181361_1010611	3300019783	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPKEKPDYMFNTNNYSKWTNFNEGLLNKIRDYKKYN
Ga0181361_1057522	3300019783	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPDYMFNNNTYSKWTNFNEGLLNKIRDYKKYN
Ga0181359_10040398	3300019784	Freshwater Lake	MCNTITSVLGFDLDADITDNEGNVIPSGTKCNYIPENKPDYVFNIDYYNKWTNFNTALLDKIRDYQKYNM
Ga0181359_10120955	3300019784	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVFNVDYYNKWTNFNEGLLNKIRDYQKYN
Ga0181359_10401411	3300019784	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVIASGTKCNYIPENKPDYVFNIDYYNKWTNFNTGLLDKIRDYQKYNM
Ga0211729_103268091	3300020172	Freshwater	MYNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVYNTNYSKWTNFNKDLLDKIRDYQKYN
Ga0211729_1042403910	3300020172	Freshwater	MCNTITSVLGFDLDAEITDNEGNVLPSGTKCNYIPENKPDYVFNIDYYNKWTNFNTALLDKIRDYQKYNL
Ga0214919_1001425413	3300023184	Freshwater	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPDYVFNIDYYNKWTNFNEGLLNKIRDYKRYN
Ga0210003_10319855	3300024262	Deep Subsurface	MCNTITSVLGFDLDAEITDNEGNVIASGTTCNYIPEEKPDYVFNIDYYNKWTNFNEGLLNKIRDYKKYN
Ga0208966_10030531	3300027586	Freshwater Lentic	YSINYLCYFCIMCNTITSVLGFDLDAEITDNEGNVIPSGTTCNYIPEEKPDYVFNVDYYNKWTNFNEGLLNKIRDYRKYN
Ga0208974_10848092	3300027608	Freshwater Lentic	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVFNVDYYNKWTNFNEGLLNKIRDYKRYN
Ga0208951_10028648	3300027621	Freshwater Lentic	MCDTITSVLGFDLDAEITDNEGNVIRSGTKCNYIPENKPDYMFNSNIYYKWTNFNQDLLNKIKDYKKYN
Ga0208951_11643002	3300027621	Freshwater Lentic	LDAEITDNEGNVLASGTTCNYIPEEKPNYVYNTNYSKWTNFNEGLLNKIRDYQKYN
Ga0208951_11765432	3300027621	Freshwater Lentic	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVFNVDYYNKWTNFNEGLLNKIRDYKKYN
Ga0208942_100184210	3300027627	Freshwater Lentic	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVFNVDYYNKWTNFNEGLLNKIRDYRKYN
Ga0208960_100322318	3300027649	Freshwater Lentic	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYMFNNHTYSKWTNFNEGLLNKIRDYKKYN
Ga0208975_10612681	3300027659	Freshwater Lentic	MFNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVYNTNYSKWTNFNEGLLNKIRDYQKYN
Ga0209443_10420564	3300027707	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNILASGTTCNYIPEEKPNYVYNTNYSKWTNFNEGLLNKIRDYQKYN
Ga0209190_10341367	3300027736	Freshwater Lake	MDKNIIYSVLGFDLDAEITDNEGNVIASGTTCNYIPKETPHYSCNVDYYNKWTNFNTDLLSKIRDYKRRNT
Ga0209355_10435171	3300027744	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVFNVDYYNKWTNFNEG
Ga0209355_10581935	3300027744	Freshwater Lake	FDLDAEITDNEGNVLASGTTCNYIPEEKPNYVFNVDYYNKWTNFNEGLLNKIRDYQKYN
Ga0209597_10178206	3300027746	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKANYVFNVDYYNKWTNFNEGLLNKIRDYKKYN
Ga0209597_10481691	3300027746	Freshwater Lake	LCYFCIMCNTITSVLGFDLDAEITDNEGNVIASGTTCNYIPEEKPNYVYNTNYSKWTNFNKDLLNKIRDYQKYN
Ga0209596_12761251	3300027754	Freshwater Lake	MCNTITSVLGFDLNAEITDNEGNVLASGTTCNYIPENKPDYVFNVDYYNKWTNFDEGLLNKIRDYKRYN
Ga0209768_100810814	3300027772	Freshwater Lake	DLDAEITDNEGNILASGTTCNYIPEEKPNYVYNTNYSKWTNFNEGLLNKIRDYQKYN
Ga0209768_102474913	3300027772	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVYNTNYSKWTNFNKGLLNKIRDYQKY
Ga0209768_103628461	3300027772	Freshwater Lake	MCDTITSVLGFDLDAEITDNEGNVIRSGTKCNYIPENKPDYMFNSNIYYKWTNFNQDLLNKI
Ga0209107_101453814	3300027797	Freshwater And Sediment	MCNTITSVLGFDLNAEITDNEGNVLASGTTCNFIPEGKPDYVYNTNYSKWTNFNTGLLDKIKDYQKYNL
Ga0209107_104420262	3300027797	Freshwater And Sediment	CNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVYNTNYSKWTNFNEGLLNKIKDYKKYN
Ga0209230_104366282	3300027836	Freshwater And Sediment	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYTFNNHTYSKWTNFNEGLLNKIRDYKKYN
Ga0209550_108055161	3300027892	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNILASGTTCNYIPEEKPDYMFNNHTYSKWTNFNEGLLNKIKDYKKYN
Ga0209401_10243765	3300027971	Freshwater Lake	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVFNIDYYNKWTNFNEGLLNKIKDYKKYN
Ga0307380_1009990810	3300031539	Soil	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPENKPDYVFNIDYYNKWTNFNEGLLNKIRDYKKYN
Ga0307380_102382901	3300031539	Soil	DAEITDNEGNVLASGTTCNYIPEQKPHYTTNVDYYNRWTNFNTDLLSKIRDYKRLNT
Ga0307380_113191012	3300031539	Soil	MCNTITSVLGFDLDAEITDNEGNVLPSGTTCNYIPEEKPDYMFNTNNYSKWTNFNEGLLNKIRDYRKYN
Ga0307379_1001712416	3300031565	Soil	MDKNTIYSVLGFDLDAEITDNEGNVLASGTTCNYIPEQKPHYTTNVDYYNRWTNFNTDLLSKIRDYKRLNT
Ga0307379_103350763	3300031565	Soil	MCNTIISVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPDYVLNIDYYNKWTNFNEGLLNKIRDYKKYN
Ga0307376_108116422	3300031578	Soil	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPENKPDYVFNIDYYNKWTNFNEGLLNKIKDYKKYN
Ga0307377_1003353912	3300031673	Soil	MCNTIISVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVLNIDYYNKWTNFNEGLLNKIRDYKKYN
Ga0315291_101345495	3300031707	Sediment	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPENKPDYVFNIDYYNKWTNFNEGLLNKIRDYRKYN
Ga0315293_101304564	3300031746	Sediment	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPDYMFNTNNYSKWTNFNEGLLNKIRDYKKYN
Ga0315293_106708122	3300031746	Sediment	MNKNVIYSVLGFDLNAEITDNEGNVIPSGTTCNYIPKETPHYSSNVDYYNKWTNFNTDLLSKIRDYKRRNT
Ga0315288_101604183	3300031772	Sediment	MCDTITSVLGFDLDAEITDNEGNVIRSGTKCNYIPENKPDYMFNNNIYYKWTNFNQDLLNKIKDYKKYN
Ga0315288_112843713	3300031772	Sediment	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVFNVDYYNKWTNFNE
Ga0315290_103352741	3300031834	Sediment	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYMFNNNIYSKWTNFNEGLLNKIRDYKKYN
Ga0315909_1000312022	3300031857	Freshwater	MCNTITSVLGFDLDAEITDNEGNVIASGTTCNYIPENKPDYVFNVDYYNKWTNFNEGLLNKIRDYRKYNL
Ga0315294_101936044	3300031952	Sediment	MDKNVIYSVLGFDLNAEITDNEGNVIPSGTNCNYIPKETPHYSSNVDYYNKWTNFNTDLLSKIRDYKRRNT
Ga0315294_106715521	3300031952	Sediment	MCDTITSVLGFDLDAEITDNEGNVIRSGTKCNYIPENKPDYMFNNNIYYKWTNFNQDLLNKIKDYRKYN
Ga0315294_106899511	3300031952	Sediment	MSNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYVYNTNYSKWTNFNEGLLNKIRDYQKHN
Ga0315294_107506652	3300031952	Sediment	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPDYVFNVDYYNKWTNFNEGLLNKIRDYRKYN
Ga0315274_1003358512	3300031999	Sediment	MDKNVIYSVLGFDLNAEITDNEGNVIPSGTTCNYIPKETPHYSSNVDYYNKWTNFNTDLLSKIRDYKRRNT
Ga0315289_103616522	3300032046	Sediment	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYMFNNNIYSKWTNFNEGLLNKIRDYQKHN
Ga0315284_1005240711	3300032053	Sediment	MLFLIMCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPDYVFNIDYYNKWTNFNEGLLNKIRDYKRYN
Ga0315292_101398403	3300032143	Sediment	MCNTITSVLGFDLDAEITDNEGNVLASGTTCSYIPEEKPNYVYNTNYSKWTNFNKDLLDKIKDYQKYN
Ga0315292_108627513	3300032143	Sediment	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYMFNNHTYSKWTNFNEGLLNKIRDYKRYN
Ga0315276_113460683	3300032177	Sediment	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPNYMFNNNIYSKWTNFNEGLLNKIRDYRKYN
Ga0315270_102866292	3300032275	Sediment	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPDYVFNIDYYNKWTNFNEGLLNKIKDYKRYN
Ga0334989_0003516_336_548	3300033984	Freshwater	MCNTITSVLGFDLDAEITDNEGNVIPSGTTCNYIPEEKPEYIFNVDYYNKWTNFNTGLLDKIRDYQKYNL
Ga0335007_0010920_2941_3150	3300034283	Freshwater	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPKEKPNYMFNTNNYSKWTNFNEGLLNKIRDYKKYN
Ga0335007_0068382_1059_1271	3300034283	Freshwater	MCNTITSVLGFDLDAEITDNEGNVIPSGTTCNYIPEEKPEYIFNVDYYNKWTNFNTGLLDKIRDYQKYNM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098653

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences