Basic Information | |
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Family ID | F098522 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 103 |
Average Sequence Length | 56 residues |
Representative Sequence | MTEATHGTPDEIDPRVAELVVAIRDRFGLRGLRGARWMIDKEIALAEEALAELPT |
Number of Associated Samples | 86 |
Number of Associated Scaffolds | 103 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 79.61 % |
% of genes near scaffold ends (potentially truncated) | 37.86 % |
% of genes from short scaffolds (< 2000 bps) | 92.23 % |
Associated GOLD sequencing projects | 81 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.62 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (78.641 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (32.039 % of family members) |
Environment Ontology (ENVO) | Unclassified (28.155 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (48.544 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 45.78% β-sheet: 0.00% Coil/Unstructured: 54.22% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.62 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Polar Desert Sand Natural And Restored Wetlands Soil Groundwater Sediment Groundwater Sediment Soil Serpentine Soil Glacier Forefield Soil Ore Pile And Mine Drainage Contaminated Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Soil Soil Soil Ore Pile And Mine Drainage Contaminated Soil Corn Rhizosphere Plant Litter Sediment Arabidopsis Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
P12013IDBA_10830112 | 3300003312 | Ore Pile And Mine Drainage Contaminated Soil | MTEMPEEDVDPRVAEMVVAIRDRFGLRGLRGARWLIEQEIRLAEDALAGLGEGTPPVPPRFAES* |
P32013IDBA_10234772 | 3300003313 | Ore Pile And Mine Drainage Contaminated Soil | MTEMPDEDVDPRVAEMVVAIRDRFGLRGLRGARWLIEQEIRLAEDALAGLGEGTPPVPPRFAES* |
P42013CM_10054385 | 3300003461 | Ore Pile And Mine Drainage Contaminated Soil | MTEMPDEDVDPRVAEMVVAIRDRFGLRGLRGARWLIEQEIRLAEDALAGLGEDAPPVPPRFAEP* |
P52013CM_10802281 | 3300003465 | Ore Pile And Mine Drainage Contaminated Soil | MTEMPDEDVDPRVAEMVVAIRDRFGLRGLRGARWLIEQEIRLAEDALAGLGEDAPPVPPRFAE |
Ga0055467_102912862 | 3300003996 | Natural And Restored Wetlands | MSEMPDEDVDPRVAEMVVAIRDRFGLRGLRGARWMIEKEIDLAEAAIADLSRE* |
Ga0062593_1008913361 | 3300004114 | Soil | MTEATSGMPDEVDPRVAELVVAIRDRFGLRGLRGARWMIDHEITLAEEALAELPTE* |
Ga0062593_1018925362 | 3300004114 | Soil | MTEGTSGTPDEIDPRVAELVVAIRDRFGLRGLRGARAMIDQEIAVAERALAELPTE* |
Ga0062591_1014986762 | 3300004643 | Soil | PAGTDIPDEVDPKVAELVMTIRDRFGLRGLRGARWMIDNEIALAEEAMAALAADR* |
Ga0062594_1002780532 | 3300005093 | Soil | MTEATRDKPDEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE* |
Ga0070658_111260051 | 3300005327 | Corn Rhizosphere | MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGARWMLEQEIALAEEAMTELSAD* |
Ga0070670_1017879552 | 3300005331 | Switchgrass Rhizosphere | FGQPAPTREHDMTEGTSGTPDEIDPRVVELVVAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE* |
Ga0070677_109345291 | 3300005333 | Miscanthus Rhizosphere | PDEVDPRVAELVVAIRDRFGLRGMRGAHWMLEQEIALAEEAMAELSAD* |
Ga0070674_1006239122 | 3300005356 | Miscanthus Rhizosphere | MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGAHWMLEQEIALAEEATAELSAD* |
Ga0070667_1008501591 | 3300005367 | Switchgrass Rhizosphere | MTEATRDKPDEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIA |
Ga0070665_1023080111 | 3300005548 | Switchgrass Rhizosphere | MTEATRDKPDEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIAL |
Ga0070664_1017582042 | 3300005564 | Corn Rhizosphere | MTEGTSGTPDEIDPRVAELVVAIRDRFGLRGLRGAQWMIDKEIALAEEALAELPTE* |
Ga0068852_1004842761 | 3300005616 | Corn Rhizosphere | EHQMTEATRGTPDEIDPRVVELVVAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE* |
Ga0066652_1000781634 | 3300006046 | Soil | MTEATRGTPDEIDPRVAELVVAIRDRFGLRGLRGARWMIDQEIALAEDALADLPTE* |
Ga0105242_117388252 | 3300009176 | Miscanthus Rhizosphere | MTEATRDKPDEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIAVAEAALAELPTE* |
Ga0105242_126221431 | 3300009176 | Miscanthus Rhizosphere | MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGAHWMLEQEIALAEEAMAELSAD* |
Ga0105248_111574091 | 3300009177 | Switchgrass Rhizosphere | DEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE* |
Ga0126313_102099471 | 3300009840 | Serpentine Soil | QATDVPDEVDPKVAELVMTIRDRFGLRGLRGAGWMIDQEIRLAEEALADLSPDA* |
Ga0105239_115896131 | 3300010375 | Corn Rhizosphere | DKPDEIDPRVVELVVAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE* |
Ga0105246_119832462 | 3300011119 | Miscanthus Rhizosphere | MTEATHGTPDEIDPRVAELVVAIRDRFGLRGLRGARWMIDKEIALAEEALAELPT |
Ga0137312_10824112 | 3300011400 | Soil | MTDATGSAVPDEVDPLVAELVMAIRDRFGLRGLRGAHRMIESEIAIAEKALEGLPTD* |
Ga0136621_14281501 | 3300012092 | Polar Desert Sand | MTEAPDEDVDPRVAEMVVSIRDRFGLRGLRGARWMIEQEIGLADDALA |
Ga0136638_100306642 | 3300012094 | Polar Desert Sand | MAETTGAGMPEDDLDPKVAELVTAIRDRFGLRGLRGARWMIENEIALAEDAISRLAPE* |
Ga0136638_101374371 | 3300012094 | Polar Desert Sand | MPDADLDPKVAELVMTIRDRFGLRGLRGARWMIDNEIALAEDAIAELARD* |
Ga0136638_104484332 | 3300012094 | Polar Desert Sand | MTEVPEVAGVPEDEVDPKVAELVVAIRDRFGLRGLRGAKWMIDKEIAIAEQALADLPKG* |
Ga0136633_12302691 | 3300012527 | Polar Desert Sand | EMPPAEMPDADLDPKVAELVMAIRDRFGLRGLRGARWMIEKEIALAEDAIAELARD* |
Ga0136635_100040412 | 3300012530 | Polar Desert Sand | MAEKTDAGMPDDDLDPKVAELVMAIRDRFGLRGLRGARWMIENEIALAEDAIAQLAPE* |
Ga0157216_103080992 | 3300012668 | Glacier Forefield Soil | MADAHTPDVEMPDADLDPKVAELVMAIRDRFGLRGLRGARWMIEKEIALAEDAIAELARD |
Ga0136612_100560272 | 3300012680 | Polar Desert Sand | MADVQPPEAEMPDADLDPKVAELVMAIRDRFGLRGLRGARWMIDNEIALAEDAIAELARD |
Ga0136612_101239502 | 3300012680 | Polar Desert Sand | MAEKTDAGLPDDDLDPKVAELVMAIRDRFGLRGLRGARWMIENEIALAEDAIAELSRE* |
Ga0136612_103019731 | 3300012680 | Polar Desert Sand | MDAEVPPAEMPPAEMPDADLDPKVAELVMAIRDRFGLRGLRGARWMIEKEIALAEDAIAELARD* |
Ga0136612_105059411 | 3300012680 | Polar Desert Sand | MADAEVPPAEMPPAEMPDADLDPKVAELVMAIRDRFGLRGLRGARWMIEKEIALAEDAIAELARD* |
Ga0136613_100612602 | 3300012681 | Polar Desert Sand | MTEAPDEDVDPRVAEMVVSIRDRFGLRGLRGARWMIEQEIRLAEDALADLPPE* |
Ga0136611_101639232 | 3300012682 | Polar Desert Sand | MADAQPPEAEIPDADLDPKVAELVMAIRDRFGLRGLRGARWMIDKEIALAEDAIAELARD |
Ga0136611_102531612 | 3300012682 | Polar Desert Sand | MADAQPPEAEMPDADLDPKVAELVMAIRDRFGLRGLRGARWMIDNEIALAEDAIAELARD |
Ga0136611_109603221 | 3300012682 | Polar Desert Sand | AEMPDADLDPKVAELVMAIRDRFGLRGMRGARWMIDNEIALAEDAIAELARD* |
Ga0157298_103434921 | 3300012913 | Soil | EVDPKVAELVMTIRDRFGLRGLRGARWMIDNEIALAEEAMAALAADR* |
Ga0157297_101606312 | 3300012914 | Soil | MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGARWMLEQEIALAEAAMGELSAD* |
Ga0164300_100751251 | 3300012951 | Soil | MTEATRDKPDEIDPRVVELVMAIRDRFGLRGLRGARV |
Ga0164299_111104102 | 3300012958 | Soil | MTEATHGTPDEIDPRVAELVVAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE* |
Ga0164308_106949622 | 3300012985 | Soil | MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGARWMLDQEIALAEEAMTELSAD* |
Ga0164305_120066522 | 3300012989 | Soil | MTEATRGKPDEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIALAEEALA |
Ga0136639_103710812 | 3300013097 | Polar Desert Sand | MAETTGAGMPEDDLDPKVAELVTAIRDRFGLRGLRGARWMIENEIALAEDAI |
Ga0157369_106871302 | 3300013105 | Corn Rhizosphere | MTEATRDKPDEIDPRVVELVVAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE* |
Ga0132258_121703652 | 3300015371 | Arabidopsis Rhizosphere | MTERSTHGEPDDLDPRVVELVAAIRDRFGLRGMRGARWMIDREIALAEKAMADLPGE* |
Ga0180121_100005862 | 3300017695 | Polar Desert Sand | MAEKTDAGMPDDDLDPKVAELVMAIRDRFGLRGLRGARWMIENEIALAEDAIAQLAPE |
Ga0180121_101185772 | 3300017695 | Polar Desert Sand | MDAEVPPAEMPPAEMPPAEMPDADLDPKVAELVMAIRDRFGLRGLRGARWMIEKEIALAEDAIAELARD |
Ga0136617_100131723 | 3300017789 | Polar Desert Sand | MTEVPEVAGVPEDEVDPKVAELVVAIRDRFGLRGLRGAKWMIDKEIAIAEQALADLPKG |
Ga0190266_100518162 | 3300017965 | Soil | MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGARWMLEQEIALAEEAMAELSAD |
Ga0190266_105572271 | 3300017965 | Soil | RTDDGEHQMTEATSGTPDELDPRVVELVVAIRDRFGLRGLRGARAMIDQEIAVAEKALAELPTE |
Ga0184620_100442303 | 3300018051 | Groundwater Sediment | MTEATSGTPDELDPRVVELVVAIRDRFGLRGLRGARAMIDQEIAVAEKALAELPTE |
Ga0184617_12384202 | 3300018066 | Groundwater Sediment | MTEATSGTPDEIDPRVAELVMAIRDRFGLRGLRGARAMIDQEIAVAEKALAELPTE |
Ga0190272_101427112 | 3300018429 | Soil | MTDVTGSAVPDEVDPRVAELVMAIRDRFGLRGLRGAHRMIEAEIAIAEKALEGL |
Ga0190272_102741542 | 3300018429 | Soil | MTDVNGSAVPDEVDPRVAELVLAIRDRFGLRGLRGAHRMIEDEIAIAEKAMEGLPTD |
Ga0190272_110031021 | 3300018429 | Soil | MTDVQGAAMPDEVDPAVAELVMAIRDRFGLRGLRGAAWMIQQEIAIAEQALEDLPTD |
Ga0190275_119552631 | 3300018432 | Soil | MPETSPSPMPQDDVDPRVAELVVAIRDRFGLRGLRGAQWMIEKEIVLAEEAINDLAPE |
Ga0190275_132580181 | 3300018432 | Soil | MTDANGSAEPDHVDPLVAELVNAIRDRFGLRGLRGAHRMIESEIAIAEKALEGLPTD |
Ga0190269_118344171 | 3300018465 | Soil | MTEGTGGMSEEVDPRVAELVVAIRDRFGLRGLRGARWMIEKEIALAEQAMEELAAE |
Ga0190268_116618091 | 3300018466 | Soil | MADGTNSGTDMPDEVDPKVAELVVTIRDRFGLRGLRGARWMIDKEITLAEEALADLAPDR |
Ga0190270_111653582 | 3300018469 | Soil | MTDANGSAEPDHVDPLVAELVMAIRDRFGVHGLRGAHRMIEAEIEIAEKALEGLPTD |
Ga0190273_107198782 | 3300018920 | Soil | EATSGTPDEIDPRVAELVVAIRDRFGLRGLRGARWMIEQEIALAEEALADLPTE |
Ga0190273_120184092 | 3300018920 | Soil | MTEGTSGMSEEVDPRVAELVMAIRDRFGLRGLRGARWMIEKEIALAEQAMEELAAE |
Ga0190264_100486502 | 3300019377 | Soil | MPETSPSPMPEDDVDPRVAELVVAIRDRFGLRGLRGAQWMIEKEIVLAEEAINDLAPE |
Ga0206352_101216942 | 3300020078 | Corn, Switchgrass And Miscanthus Rhizosphere | MTEATRDKPDEIDPRVVELVVAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE |
Ga0206353_111885132 | 3300020082 | Corn, Switchgrass And Miscanthus Rhizosphere | MTEATRDKPDEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIALAEEALAELP |
Ga0222622_106016192 | 3300022756 | Groundwater Sediment | MTEATSGTPDEIDPRVVELVVAIRDRFGLRGLRGARAMIDQEIAVAERALAELPTE |
Ga0247776_101378702 | 3300023275 | Plant Litter | MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGARWMLEQEIALAEAAMGELSAD |
Ga0210087_11135512 | 3300025559 | Natural And Restored Wetlands | MSEMPDEDVDPRVAEMVVAIRDRFGLRGLRGARWMIEKEIDLAEAAIADLSRE |
Ga0207642_104176992 | 3300025899 | Miscanthus Rhizosphere | MTEATRDKPDEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE |
Ga0207705_108134412 | 3300025909 | Corn Rhizosphere | MTDRSTAGEPDEVDPRVAELVVAIRDRFGLRGMRGARWMLEQEIALAEEAIAELSAD |
Ga0207649_113697641 | 3300025920 | Corn Rhizosphere | MTEATRDKPDEIDPRVVELVMAIRDRFGLRGLRGARAMIDQEIAVAERALAELPTE |
Ga0207686_111855112 | 3300025934 | Miscanthus Rhizosphere | MTEATRDKPDEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIALAEEALAE |
Ga0207704_118858761 | 3300025938 | Miscanthus Rhizosphere | MTEATRGKPEEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIALAEDALAELPTE |
Ga0207661_112494761 | 3300025944 | Corn Rhizosphere | MTEATSGMPDEVDPRVAELVVAIRDRFGLRGLRGARWMIDHEITLAEEALA |
Ga0207679_115310692 | 3300025945 | Corn Rhizosphere | DDGEHQMTEATRGTPDEIDPRVAELVVAIRDRFGLRGLRGARAMIDQEIAVAERALAELPTE |
Ga0207698_117488131 | 3300026142 | Corn Rhizosphere | DKPDEIDPRVVELVMAIRDRFGLRGLRGARVMIDKEIALAEEALAELPTE |
Ga0214468_10200432 | 3300027647 | Soil | VTEIPDDEVDPKVAELVVTIRDRFGLRGLRGARWMIDKEIAIADEALGDLAPD |
Ga0247828_104458272 | 3300028587 | Soil | MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGARWMLEQEIALAEEAIAELSAD |
Ga0307295_102406412 | 3300028708 | Soil | RVEDPPTTTGRTMTDVSGSPVPDEVDPLVAELVMAIRDRFGVHGLRSAASMIEDEIAIAEKALEGLPTD |
Ga0307285_101771512 | 3300028712 | Soil | MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGARWMLEQEIALAEEAMAELS |
Ga0307311_102422162 | 3300028716 | Soil | MTEATSGTPDEIDPRVVELVVAIRDRFGLRGLRGARAMIDQEIALAEKALAELPTE |
Ga0307317_102168562 | 3300028720 | Soil | PSTDDGEHQMTEATSGTPDEIDPRVAELVMAIRDRFGLRGLRGARWMIEQEIALAEQALAELPTE |
Ga0307316_102002851 | 3300028755 | Soil | MTEATSGTPDEIDPRVVELVVAIRDRFGLRGLRGARAMIDQEIALAE |
Ga0307280_100960392 | 3300028768 | Soil | MTEATSGTPDEIDPLVAELVVAIRDRFGLRGLRGARAMIDQEIAVAERALAELPTE |
Ga0307282_103520302 | 3300028784 | Soil | MTEATSGTPDEIDPRVVELVVAIRDRFGLRGLRGARAMIDQEIA |
Ga0307282_106248162 | 3300028784 | Soil | MTEATGGTPDEIDPRVVELVVAIRDRFGLRGLRGARAMIDQEIAVAERALAELPTE |
Ga0307289_102260372 | 3300028875 | Soil | MTEATGGTPDEIDPRVVELVVAIRDRFGLRGLRGARAMIDQEIAVVGARC |
Ga0307286_102490902 | 3300028876 | Soil | GTPDEIDPRVVELVVAIRDRFGLRGLRGARAMIDQEIALAEKALAELPTE |
Ga0307278_102975992 | 3300028878 | Soil | MTEATSGTPDEIDPRVVELVVAIRDRFGLRGLRGARAMIDQEIALAEKALAQLPTE |
Ga0307308_106576751 | 3300028884 | Soil | MTEATSGTPDEIDPRVAELVMAIRDRFGLRGLRGARAMIDQEIAVAERALAE |
Ga0247827_102755932 | 3300028889 | Soil | MTEATRGTPDEIDPRVAELVVAIRDRFGLRGLRGAQWMIDKEIALAEEALAELPTE |
Ga0247826_102382322 | 3300030336 | Soil | MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGAHWMLEQEIALAEEAMAELSAD |
Ga0247826_104129051 | 3300030336 | Soil | MTDRSTAGAPDEVDPRVAELVVAIRDRFGLRGMRGARWMLEQEIALAEAAMG |
Ga0307501_102494872 | 3300031152 | Soil | MTEATSGTPDEVDPLVAELVVAIRDRFGLRGLRGAHAMIEQEIVRAEEAMAELPTE |
Ga0307499_102328482 | 3300031184 | Soil | TSGTPDEIDPRVAELVVAIRDRFGLRGLRGARAMIDQEIAVAERALAELPTE |
Ga0307408_1004820491 | 3300031548 | Rhizosphere | MTEDRNDLAEEVDPRVAELVVAIRDRFGLRGLRGAHWLIEQEIRIAEAAVADLARD |
Ga0307413_107126182 | 3300031824 | Rhizosphere | MTAASPPDGVPEDVDPHVAEMVIAIRDRFGVRGLRGARWMIDQEIRLAEDALSELDEDG |
Ga0307407_114537991 | 3300031903 | Rhizosphere | GARVGHAGHRPDGESGMTENQRADAPEDVDPRVAELVVAIRDRFGLRGMRGARWLLDQEIALAEEALAGLPSE |
Ga0364935_0206778_59_232 | 3300034151 | Sediment | MTDATGSAVPDEVDPLVAELVMAIRDRFGLRGLRGAHRMIESEIAIAEKALEGLPTD |
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