Metagenome Family F098488

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F098488
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	52 residues
Representative Sequence	MTELDQDAQSKQRIRAWLDNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK
Number of Associated Samples	78
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	82.52 %
% of genes near scaffold ends (potentially truncated)	35.92 %
% of genes from short scaffolds (< 2000 bps)	97.09 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (90.291 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland (35.922 % of family members)
Environment Ontology (ENVO)	Unclassified (76.699 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (96.117 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 73.58% β-sheet: 0.00% Coil/Unstructured: 26.42%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00847	AP2	14.56
PF02945	Endonuclease_7	3.88
PF00075	RNase_H	1.94
PF01612	DNA_pol_A_exo1	0.97

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
All Organisms	root	All Organisms	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Viruses	superkingdom	All Organisms → Viruses	5.83 %
cellular organisms	root	All Organisms → cellular organisms	3.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	3.88 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	3.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	3.88 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	3.88 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3.88 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3.88 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	1.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.29 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3.88 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.94 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000553\|TBL_comb47_HYPODRAFT_10103831	Not Available	1387	Open in IMG/M
3300003375\|JGI26470J50227_1049564	Not Available	738	Open in IMG/M
3300004684\|Ga0065168_1049843	Not Available	658	Open in IMG/M
3300004685\|Ga0065177_1109428	Not Available	510	Open in IMG/M
3300004770\|Ga0007804_1076177	Not Available	864	Open in IMG/M
3300006072\|Ga0007881_1048262	Not Available	1114	Open in IMG/M
3300006109\|Ga0007870_1054664	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	774	Open in IMG/M
3300006113\|Ga0007858_1034851	Not Available	1111	Open in IMG/M
3300006127\|Ga0007805_1048010	Not Available	947	Open in IMG/M
3300009518\|Ga0116128_1085542	Not Available	945	Open in IMG/M
3300009519\|Ga0116108_1158617	Not Available	670	Open in IMG/M
3300009519\|Ga0116108_1174127	Not Available	636	Open in IMG/M
3300009519\|Ga0116108_1188328	Not Available	607	Open in IMG/M
3300009547\|Ga0116136_1015386	All Organisms → cellular organisms → Bacteria	2644	Open in IMG/M
3300009548\|Ga0116107_1138400	Not Available	682	Open in IMG/M
3300009548\|Ga0116107_1174860	Not Available	577	Open in IMG/M
3300009549\|Ga0116137_1111102	Not Available	791	Open in IMG/M
3300009615\|Ga0116103_1072847	Not Available	917	Open in IMG/M
3300009616\|Ga0116111_1056770	Not Available	1106	Open in IMG/M
3300009616\|Ga0116111_1078076	Not Available	878	Open in IMG/M
3300009616\|Ga0116111_1089055	Not Available	798	Open in IMG/M
3300009618\|Ga0116127_1178710	Not Available	520	Open in IMG/M
3300009629\|Ga0116119_1154236	Not Available	573	Open in IMG/M
3300009630\|Ga0116114_1035847	Not Available	1438	Open in IMG/M
3300009631\|Ga0116115_1033086	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1422	Open in IMG/M
3300009631\|Ga0116115_1113795	Not Available	691	Open in IMG/M
3300009632\|Ga0116102_1079896	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300009632\|Ga0116102_1111222	Not Available	780	Open in IMG/M
3300009632\|Ga0116102_1184687	Not Available	563	Open in IMG/M
3300009634\|Ga0116124_1141322	Not Available	674	Open in IMG/M
3300009636\|Ga0116112_1035056	All Organisms → Viruses → Predicted Viral	1560	Open in IMG/M
3300009640\|Ga0116126_1123518	Not Available	894	Open in IMG/M
3300009640\|Ga0116126_1166206	Not Available	729	Open in IMG/M
3300009641\|Ga0116120_1221236	Not Available	597	Open in IMG/M
3300009760\|Ga0116131_1074101	Not Available	1052	Open in IMG/M
3300009760\|Ga0116131_1235807	Not Available	502	Open in IMG/M
3300014151\|Ga0181539_1319824	Not Available	566	Open in IMG/M
3300014153\|Ga0181527_1380202	Not Available	543	Open in IMG/M
3300014155\|Ga0181524_10106919	Not Available	1546	Open in IMG/M
3300014158\|Ga0181521_10332109	Not Available	769	Open in IMG/M
3300014158\|Ga0181521_10434941	Not Available	639	Open in IMG/M
3300014164\|Ga0181532_10735705	Not Available	531	Open in IMG/M
3300014811\|Ga0119960_1080088	Not Available	582	Open in IMG/M
3300017925\|Ga0187856_1108548	Not Available	1093	Open in IMG/M
3300017925\|Ga0187856_1124598	Not Available	996	Open in IMG/M
3300017925\|Ga0187856_1213352	Not Available	694	Open in IMG/M
3300017925\|Ga0187856_1279405	Not Available	580	Open in IMG/M
3300017929\|Ga0187849_1113680	Not Available	1130	Open in IMG/M
3300017929\|Ga0187849_1128612	Not Available	1042	Open in IMG/M
3300017929\|Ga0187849_1171004	Not Available	864	Open in IMG/M
3300017931\|Ga0187877_1206883	Not Available	768	Open in IMG/M
3300017931\|Ga0187877_1321440	Not Available	589	Open in IMG/M
3300017938\|Ga0187854_10151484	Not Available	1052	Open in IMG/M
3300017938\|Ga0187854_10244234	Not Available	781	Open in IMG/M
3300017938\|Ga0187854_10300482	Not Available	686	Open in IMG/M
3300017938\|Ga0187854_10369878	Not Available	604	Open in IMG/M
3300017940\|Ga0187853_10177151	Not Available	1008	Open in IMG/M
3300017996\|Ga0187891_1233581	Not Available	616	Open in IMG/M
3300017996\|Ga0187891_1294901	Not Available	530	Open in IMG/M
3300017998\|Ga0187870_1147346	Not Available	864	Open in IMG/M
3300018002\|Ga0187868_1179278	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	749	Open in IMG/M
3300018004\|Ga0187865_1174664	Not Available	742	Open in IMG/M
3300018005\|Ga0187878_1324774	Not Available	547	Open in IMG/M
3300018009\|Ga0187884_10451780	Not Available	517	Open in IMG/M
3300018013\|Ga0187873_1164643	Not Available	842	Open in IMG/M
3300018013\|Ga0187873_1280105	Not Available	614	Open in IMG/M
3300018015\|Ga0187866_1093095	Not Available	1258	Open in IMG/M
3300018017\|Ga0187872_10306847	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	693	Open in IMG/M
3300018020\|Ga0187861_10390507	Not Available	584	Open in IMG/M
3300018021\|Ga0187882_1392695	Not Available	527	Open in IMG/M
3300018023\|Ga0187889_10516160	Not Available	508	Open in IMG/M
3300018024\|Ga0187881_10288760	Not Available	682	Open in IMG/M
3300018025\|Ga0187885_10248777	Not Available	812	Open in IMG/M
3300018026\|Ga0187857_10344224	Not Available	676	Open in IMG/M
3300018034\|Ga0187863_10379476	Not Available	787	Open in IMG/M
3300018040\|Ga0187862_10315977	Not Available	981	Open in IMG/M
3300018042\|Ga0187871_10422226	Not Available	737	Open in IMG/M
3300018047\|Ga0187859_10367245	Not Available	786	Open in IMG/M
3300018057\|Ga0187858_10345781	Not Available	934	Open in IMG/M
3300020710\|Ga0214198_1024986	Not Available	737	Open in IMG/M
3300021138\|Ga0214164_1020156	Not Available	1906	Open in IMG/M
3300025353\|Ga0208255_117811	Not Available	635	Open in IMG/M
3300025390\|Ga0208743_1017405	Not Available	1096	Open in IMG/M
3300025398\|Ga0208251_1055241	Not Available	628	Open in IMG/M
3300025402\|Ga0208876_1004780	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2718	Open in IMG/M
3300025416\|Ga0208877_1060934	Not Available	600	Open in IMG/M
3300025442\|Ga0208034_1074276	Not Available	629	Open in IMG/M
3300025442\|Ga0208034_1085762	Not Available	557	Open in IMG/M
3300025446\|Ga0208038_1035556	Not Available	1042	Open in IMG/M
3300025446\|Ga0208038_1035656	Not Available	1040	Open in IMG/M
3300025446\|Ga0208038_1051815	Not Available	787	Open in IMG/M
3300025448\|Ga0208037_1097159	Not Available	501	Open in IMG/M
3300025459\|Ga0208689_1020217	All Organisms → Viruses → Predicted Viral	1815	Open in IMG/M
3300025466\|Ga0208497_1081575	Not Available	607	Open in IMG/M
3300025470\|Ga0208389_1034150	Not Available	1025	Open in IMG/M
3300025501\|Ga0208563_1085915	Not Available	620	Open in IMG/M
3300025576\|Ga0208820_1060551	Not Available	1023	Open in IMG/M
3300025777\|Ga0208110_1001488	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	4130	Open in IMG/M
3300025812\|Ga0208457_1098510	Not Available	535	Open in IMG/M
3300032579\|Ga0316228_1053165	Not Available	1601	Open in IMG/M
3300032676\|Ga0316229_1240496	Not Available	685	Open in IMG/M
3300032677\|Ga0316227_1062914	Not Available	1540	Open in IMG/M
3300032753\|Ga0316224_1259567	Not Available	546	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	100.00%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	76.70%
Lentic	Environmental → Aquatic → Freshwater → Lentic	22.33%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	40.78%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	35.92%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	15.53%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	4.85%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	35.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	34.95%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	15.53%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.83%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	4.85%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.94%
Aquatic	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Aquatic	0.97%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000553	Trout Bog Lake May 28 2007 Hypolimnion (Trout Bog Lake Combined Assembly 47 Hypolimnion Samples, Aug 2012 Assem)	Environmental	Open in IMG/M
3300003375	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6	Environmental	Open in IMG/M
3300004684	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE23Jun09 (version 2)	Environmental	Open in IMG/M
3300004685	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (version 2)	Environmental	Open in IMG/M
3300004770	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Aug07	Environmental	Open in IMG/M
3300006072	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09	Environmental	Open in IMG/M
3300006109	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH04Jul08	Environmental	Open in IMG/M
3300006113	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Aug08	Environmental	Open in IMG/M
3300006127	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE24Aug09	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009547	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40	Environmental	Open in IMG/M
3300009548	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100	Environmental	Open in IMG/M
3300009549	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100	Environmental	Open in IMG/M
3300009615	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300009618	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100	Environmental	Open in IMG/M
3300009629	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009634	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150	Environmental	Open in IMG/M
3300009636	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150	Environmental	Open in IMG/M
3300009640	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009760	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_100	Environmental	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014811	Aquatic viral communities from ballast water - Michigan State University - AB_ballast water	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300017998	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018005	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018015	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018021	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300020710	Freshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 epilimnion	Environmental	Open in IMG/M
3300021138	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion	Environmental	Open in IMG/M
3300025353	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH06Jun08 (SPAdes)	Environmental	Open in IMG/M
3300025390	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH04Jul08 (SPAdes)	Environmental	Open in IMG/M
3300025398	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE15Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025402	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH03Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025416	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025442	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 (SPAdes)	Environmental	Open in IMG/M
3300025446	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100 (SPAdes)	Environmental	Open in IMG/M
3300025448	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100 (SPAdes)	Environmental	Open in IMG/M
3300025459	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150 (SPAdes)	Environmental	Open in IMG/M
3300025466	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Aug07 (SPAdes)	Environmental	Open in IMG/M
3300025470	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025501	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150 (SPAdes)	Environmental	Open in IMG/M
3300025576	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40 (SPAdes)	Environmental	Open in IMG/M
3300025777	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH13Jun08 (SPAdes)	Environmental	Open in IMG/M
3300025812	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150 (SPAdes)	Environmental	Open in IMG/M
3300032579	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18021	Environmental	Open in IMG/M
3300032676	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18023	Environmental	Open in IMG/M
3300032677	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18019	Environmental	Open in IMG/M
3300032753	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18013	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
TBL_comb47_HYPODRAFT_101038315	3300000553	Freshwater	MTELDQDAQSKQRCAAWLDNVDFPYAWNRRALAILLLEFEKYLQACEAERMDK*
JGI26470J50227_10495641	3300003375	Freshwater	MTELDQDAQSKQRIRAWLDNVDFPYAWVRAYRYALVVLLLEFEKYLQACEAERMDK*
Ga0065168_10498432	3300004684	Freshwater	DAQSKQRIRAWLDNVDFPYAWVRAYRYALVVLLLEFEKYLQACEAERMDK*
Ga0065177_11094281	3300004685	Freshwater	MTELDQDAQSKQRIKAWLDNVDFSAPWNRRALAILLLEFEKYLQACEAERMDK*
Ga0007804_10761772	3300004770	Freshwater	MTEFDQDAQSKQRCAAWLDNVDFPYAWDRYALAVLLLEFEKYLQACEAERMDK*
Ga0007881_10482624	3300006072	Freshwater	MTEPYQDAQRTQRIKAWIDNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK*
Ga0007870_10546642	3300006109	Freshwater	MTEPEQDAQSKQRIKAWLDNVDFSAPWNRRALAILLLEFEKYLQACEAERMDK*
Ga0007858_10348512	3300006113	Freshwater	MTELDQDAQSKQRCAAWLDNVDFSAPWNRRALAILLLEFEKYLQACEAERMDK*
Ga0007805_10480102	3300006127	Freshwater	MTELDQDAQSKQRIKTWIDNVDFSAPWNRSALAVLLLEFEKYLQACEAERMDK*
Ga0116128_10855423	3300009518	Peatland	MPEPDQDAQRTQRIKAWIDNVDFPYAWNRRALAVLLLEFEKYLQACEAERM
Ga0116108_11586173	3300009519	Peatland	MTELDQDAQSKQRIKTWLDNVDFSAPWDRYALAVLLLEFEKYLQACEAERMDK*
Ga0116108_11741272	3300009519	Peatland	MMTEPYQDAQRTQRIKAWIDNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK*
Ga0116108_11883281	3300009519	Peatland	MTELDQDAQSKQRIKTWLDNVDFSAPWNRYALAVLLLEFEKYLQACEAERMDK*
Ga0116136_10153864	3300009547	Peatland	MTELDQDAQSKQRIKTWLDNVDFPYAWVRAYRYALVVLLLEFEKYLQACEAERMDK*
Ga0116107_11384002	3300009548	Peatland	AQRTQRIKAWIDNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK*
Ga0116107_11748602	3300009548	Peatland	MEELDQDAQSKQRIKAWLSNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK*
Ga0116137_11111021	3300009549	Peatland	MTELDQDAQSKQRIKTWLDNVDFSAPWNRRALAILLLEFEKYLQACEAERMDK*
Ga0116103_10728473	3300009615	Peatland	MTELDQDAQSKQRIKTWLDNVDFSAPWNRRALAVLLLEFEKYLQACEAERMDK*
Ga0116111_10567702	3300009616	Peatland	MPELDQDAQSKQRCAAWLDNVDFPYAWDRYALAVLLLEFEKYLQACEAERMDK*
Ga0116111_10780763	3300009616	Peatland	MTEPYQDAQRTQRCAAWLDNVDFPYAWDRHALAVLLLEFEKYLQACEAERMDK*
Ga0116111_10890553	3300009616	Peatland	MTELDQDAQRTQRIKAWIDNVDFPYAWNRRALAVLLLEFEKYLQACEA
Ga0116127_11787101	3300009618	Peatland	MTEPYQDAQRTQRCAAWLDNVDFPYAWDRHALAVLLLEFEKYLQAC
Ga0116119_11542363	3300009629	Peatland	MTELDQDAQSTQRIKAWIDNVDFPYAWNRRALAVLLLEFEKYL
Ga0116114_10358471	3300009630	Peatland	MTELDQDAQSKQRIKTWLDNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK*
Ga0116115_10330861	3300009631	Peatland	MTEPEQNAQSKQRCAAWLANVDFPYAWDRHALAVLLLEFEKYLQACEAERMDK*
Ga0116115_11137953	3300009631	Peatland	MTELDQDAQSKQRIKAWLDNVDFPYAGDRHALAVLLLEFEKYLQACEAERMDK*
Ga0116102_10798963	3300009632	Peatland	MTDPYQDAQRTQRIKAWLSNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK*
Ga0116102_11112222	3300009632	Peatland	MTELDQDAQSKQRIKTWLDNVDFLYAWNRRALAVLLLEFEKYLQACEAERMDK*
Ga0116102_11846872	3300009632	Peatland	MTELDQDAQSKQRIKAWLDNVDFSAPWNRRALAILLLEFEKYLQA
Ga0116124_11413223	3300009634	Peatland	TWRDNVDLEPYQDAQRTQRIKAWIDNVDFPYAWDRRALAVLLLEFEKYLQACEAERMDK*
Ga0116112_10350563	3300009636	Peatland	MTELDQDAQSKQRCAAWLSNVDFPYAWDRHALAVLLLEFEKYLQACEAERMDK*
Ga0116126_11235181	3300009640	Peatland	EPYQDAQRTQRIKAWIDNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK*
Ga0116126_11662062	3300009640	Peatland	MTELDQDAQSKQRCAAWLDNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK*
Ga0116120_12212361	3300009641	Peatland	LDQDAQSKQRCAAWLDNVDFPYAWDRHALAVLLLEFEKYLQACEAERMDA*
Ga0116131_10741011	3300009760	Peatland	WRDNVDLEPYQDAQRTQRIKAWIDNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK*
Ga0116131_12358073	3300009760	Peatland	MTELDQDAQSKQRIKTWLDNVDFPYAWDRYALAVLLLEFEKYLQACEAERMDK*
Ga0181539_13198242	3300014151	Bog	MTEFDQDAQSKQRCAAWLDNVDFSAPWNRRALAILLLEFEKYLQACEAERMDK*
Ga0181527_13802023	3300014153	Bog	MTELDQDAQSKQRIKTWLDNIDFPYAWDRNALAILLLEFEKYLQACEAERMDK*
Ga0181524_101069192	3300014155	Bog	MTELDQDAQSKQRIKAWLDNVDFPYAWVRAHRYALAVLLLEFEKYLQACEAERMDK*
Ga0181521_103321092	3300014158	Bog	MTELDQDAQSKQRIKAWIDNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK*
Ga0181521_104349411	3300014158	Bog	AQSKQRCAAWLDDVDFPYAWDRYALAVLLLEFEKYLQACEAERMDK*
Ga0181532_107357051	3300014164	Bog	MTELDQDAQSKQRIRAWLDNVDFPYAWVRAYRYALVVLLLEFEKYL
Ga0119960_10800881	3300014811	Aquatic	MAEPEHDAQRMQRCAAWLSNIDFPYAWDRYALAVLLLEFEKYLQACEAERMAK*
Ga0187856_11085482	3300017925	Peatland	MPELDQDAQSKQRCAAWLDNVDFPYAWDRYALAVLLLEFEKYLQACEAERMDK
Ga0187856_11245983	3300017925	Peatland	MTELDQDAQSKQRCAAWLANVDFPYAWDRHALAVLLLEFEKYLQACEAERMDK
Ga0187856_12133521	3300017925	Peatland	MTELDQDAQRTQRIKTWLDNVDFSAPWNRRALAVLLLEFEKYLQACEAERMDK
Ga0187856_12794052	3300017925	Peatland	MTEPYQDAQRTQRIKTWLDNVDFPYAWVRAHRYALAILLLEFEKYLQACEAERMDK
Ga0187849_11136803	3300017929	Peatland	MPEPYQDAQRTQRIKAWIDNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK
Ga0187849_11286122	3300017929	Peatland	MTELDQDAQSKQRIKTWLDNVDFSAPWNRRALAILLLEFEKYLQACEAERMDK
Ga0187849_11710043	3300017929	Peatland	TELDQDAQSKQRIKAWLDNVDFSAPWNRRALAILLLEFEKYLQACEAERMDK
Ga0187877_12068832	3300017931	Peatland	MTEFDQDAQSKQRCAAWLDNVDFPYAWDRYALAVLLLEFEKYLQACEAERMDK
Ga0187877_13214403	3300017931	Peatland	MTELDQDAQSKQRIKTWLDNVDFSAPWNRRALAILLLEFEKYLQACEAE
Ga0187854_101514843	3300017938	Peatland	MPEPYQDAQSTQRIKAWLDNVDFSAPWNRRALAVLLLEFEKYLQACEAERMDK
Ga0187854_102442342	3300017938	Peatland	MTEPYQDAQRTQRIKAWIDNADFPYAWNRRALAVLLLEFEKYLQACEAERMDK
Ga0187854_103004821	3300017938	Peatland	CLIRVAVMPEPYQDAQRTQRIKAWLSNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK
Ga0187854_103698782	3300017938	Peatland	MTELDQDAQRTQRIKAWLDNVDFPYAGDRHALAVLLLEFEKYLQACEAERMDK
Ga0187853_101771513	3300017940	Peatland	MTELDQDAQSKQRIRAWLDNVDFPYAWVRAYRYALVVLLLEFEKYLQACEAERMDK
Ga0187891_12335811	3300017996	Peatland	EPYQDAQRTQRIKAWIDNVDFPYPSKRRALAILLLEFEKYLQACEAERMDK
Ga0187891_12949012	3300017996	Peatland	MEELDQDAQSKQRIKAWLSNVDFPYAWDRHALAVLLLEFEKYLQACEAERMDK
Ga0187870_11473462	3300017998	Peatland	MTELDQDAQSKQRCAAWLDNVDFPYAWDRHALAVLLLEFEKYLQACEAERMDK
Ga0187868_11792782	3300018002	Peatland	MTEPYQDAQRTQRCAAWLDNVDFPYAWDRHALAVLLLEFEKYLQACEAERMDK
Ga0187865_11746641	3300018004	Peatland	MTELDQDAQSKQRCAAWLDNVDFPYAWDRYALAVLLLEFEKYLQACEAERMAK
Ga0187878_13247742	3300018005	Peatland	MEELDQDAQRTQRIKAWLSNVDFPYAWDRHALAVLLLEFEKYLQACEAERMDK
Ga0187884_104517802	3300018009	Peatland	MEEPYQDAQRTQRIKAWLSNVDFPYAWDRHALAVLLLEFEKYLQACEAERMDK
Ga0187873_11646433	3300018013	Peatland	MPEPYQDAQSTQRIKAWLSNVDFPYAWDRHALAVLLLEFEKYLQACEAE
Ga0187873_12801052	3300018013	Peatland	MTEPYQDAQRIQRITAWLDNVDFPYAWDRYALAFLLLEFEKYLQACEAERMDK
Ga0187866_10930953	3300018015	Peatland	MPEPYQDAQRTQRCAAWLDNVDFPYAWDRHALAVLLLEFEKYLQACEAERMDK
Ga0187872_103068471	3300018017	Peatland	DAGGHLMPEPYQDAQRTQRIKTWLDNVDFSAPWNRRALAVLLLEFEKYLQACEAERMDK
Ga0187861_103905072	3300018020	Peatland	MTEFDQDAQSKQRCAAWLDNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK
Ga0187882_13926952	3300018021	Peatland	MPELDQDAQSKQRCAAWLDNVDFSAPWNRRALAVLLLEFEKYLQACEAERMDK
Ga0187889_105161601	3300018023	Peatland	MTEFDQDAQSKQRCAAWLDNVDFPYAWDRYALAVLLLEFEKYLQA
Ga0187881_102887602	3300018024	Peatland	VDLEPYQDAQRTQRIKAWIDNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK
Ga0187885_102487771	3300018025	Peatland	MTEPYQDAQRTQRIKAWLSNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK
Ga0187857_103442241	3300018026	Peatland	MTELDQDAQSKQRCAAWLDNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK
Ga0187863_103794761	3300018034	Peatland	MTEPYQDAQRTQRIKAWIDNVDFPYAWDRHALAVLLLEFEKYL
Ga0187862_103159773	3300018040	Peatland	MTDPYQDAQRTQRIKAWLSNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK
Ga0187871_104222262	3300018042	Peatland	MTELDQDAQSTQRIKAWIDNVDLPYAWNRRALAVLLLEFEKYLQACEAERMDK
Ga0187859_103672453	3300018047	Peatland	MTELDQDAQRTQRIKAWIDNVDFPYAWNRRALAVLLLEFEKYLQA
Ga0187858_103457813	3300018057	Peatland	MPEPYQDAQRTQRIKAWIDNVDFPYAWNRRALAVLLLEFEKYLQACEA
Ga0214198_10249861	3300020710	Freshwater	DAGGHLMTELDQDAQSKQRIRAWLDNVDFPYAWVRAYRYALVVLLLEFEKYLQACEAERMDK
Ga0214164_10201563	3300021138	Freshwater	MTELDQDAQSKQRIRAWLDNVDFPYAWVRAHRYALVVLLLEFEKYLQACEAERMDK
Ga0208255_1178111	3300025353	Freshwater	MTELDQDAQSKQRCAAWLDNVDFPYAWDRYALAVLLLEFEKYLQACEAERMDK
Ga0208743_10174054	3300025390	Freshwater	YQDAQRTQRIKAWIDNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK
Ga0208251_10552413	3300025398	Freshwater	TQRIKAWLDNVDFPYAWVRAHRYALAVLLLEFEKYLQACEAERMDK
Ga0208876_10047804	3300025402	Freshwater	MTELDQDAQSKQRIKAWLDNVDFSAPWNRRALAILLLEFEKYLQACEAERMDK
Ga0208877_10609343	3300025416	Freshwater	MTELDQDAQSKQRIKAWLDNVDFPYAWVRAHRYALAVLLLEFEKYLQACEAERMDK
Ga0208034_10742762	3300025442	Peatland	MEELDQDAQSKQRIKAWLSNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK
Ga0208034_10857621	3300025442	Peatland	MTELDQDAQSKQRCAAWLDNVDFPYAWDRYALAVLLLEFEKYLQACEAERMD
Ga0208038_10355565	3300025446	Peatland	MEELDQDAQSKQRCAAWLANIDFPYAWDRNALAVLLLEFEKYLQACEAERMDK
Ga0208038_10356561	3300025446	Peatland	MPEPDQDAQRTQRIKAWIDNVDFPYAWNRRALAVLLLEFEKYLQA
Ga0208038_10518151	3300025446	Peatland	MTELDQDAQSKQRCAAWLDNVDFPYAWNRRALAILLLEFEKYLQACEAERMDK
Ga0208037_10971591	3300025448	Peatland	MTELDQDAQSKQRIKTWLDNVDFSAPWDRYALAVLLLEFEKYLQACEAERMDK
Ga0208689_10202174	3300025459	Peatland	MTELDQDAQSKQRCAAWLSNVDFPYAWDRHALAVLLLEFEKYLQACEAERMDK
Ga0208497_10815751	3300025466	Freshwater	MTEFDQDAQSKQRCAAWLDNVDFPYAWNRRALAILLLEFEKYLQACEAERMDK
Ga0208389_10341501	3300025470	Freshwater	DAQRTQRIKAWIDNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK
Ga0208563_10859151	3300025501	Peatland	VMTEPYQDAQRTQRIKAWIDNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK
Ga0208820_10605511	3300025576	Peatland	QHQVGIVMTEFDQDAQSKQRCAAWLDNVDFPYAWNRRALAILLLEFEKYLQACEAERMDK
Ga0208110_10014883	3300025777	Freshwater	MTELDQDAQSKQRIRAWLDNVDFPYAWNRRALAVLLLEFEKYLQACEAERMDK
Ga0208457_10985101	3300025812	Peatland	MTELDQDAQSKQRIKTWLDNVDFPYAWIRAHRYALAVLLLEFEKYLQACEAERMDK
Ga0316228_10531651	3300032579	Freshwater	MTELDQDAQSKQRCAAWLDNVDFPYAWNRRALAILLLEFEKYL
Ga0316229_12404961	3300032676	Freshwater	MTELDQDAQSKQRIRAWLDNVDFPYAWVRAYRYALVVLLLEFEKYLQACE
Ga0316227_10629143	3300032677	Freshwater	MTELDQDAQSKQRIKTWLDNVDFSAPWNRRALAVLLLEFEKYLQACEAERMDK
Ga0316224_12595671	3300032753	Freshwater	MTELDQDAQSKQRIKTWLDNVDFSAPWNRRALAVLLLEFEKYLQAC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F098488

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences