Metagenome Family F098422

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098422
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	76 residues
Representative Sequence	RATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Number of Associated Samples	61
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	27.18 %
% of genes near scaffold ends (potentially truncated)	53.40 %
% of genes from short scaffolds (< 2000 bps)	90.29 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (63.107 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (39.806 % of family members)
Environment Ontology (ENVO)	Unclassified (68.932 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (70.874 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120 1Ga0066395_100795493 2Ga0066388_1000758541 3Ga0066388_1001426014 4Ga0066903_1012142863 5Ga0066903_1012984782 6Ga0066903_1023447202 7Ga0066903_1079735351 8Ga0126374_116245081 9Ga0126373_101970182 10Ga0126373_102402202 11Ga0126373_102727521 12Ga0126370_104941651 13Ga0126378_117928902 14Ga0126381_1007353272 15Ga0126381_1023829081 16Ga0126369_101875872 17Ga0126369_113540542 18Ga0182036_100737793 19Ga0182036_102280794 20Ga0182041_100750774 21Ga0182041_102045003 22Ga0182041_105044542 23Ga0182033_106096291 24Ga0182033_117513361 25Ga0182032_106448791 26Ga0182034_105734751 27Ga0182037_102431861 28Ga0182037_105389321 29Ga0182037_112163541 30Ga0182039_101815693 31Ga0182039_107432341 32Ga0182039_107469101 33Ga0182039_119409872 34Ga0182039_120253551 35Ga0182039_121866882 36Ga0126371_100480581 37Ga0126371_103849053 38Ga0126371_105958221 39Ga0126371_123500721 40Ga0126371_129173052 41Ga0207820_1068122 42Ga0207859_10175721 43Ga0207746_10148392 44Ga0207858_10042114 45Ga0207779_10043663 46Ga0207743_10086803 47Ga0207803_10310621 48Ga0207722_10292571 49Ga0207776_10391142 50Ga0207761_10244371 51Ga0318516_107959811 52Ga0318534_108427002 53Ga0318541_108589741 54Ga0318538_101293523 55Ga0318538_108204921 56Ga0318528_103237901 57Ga0310915_106071621 58Ga0318561_107607511 59Ga0318574_101274222 60Ga0318560_103479281 61Ga0306917_108599051 62Ga0318501_107155521 63Ga0306918_101414963 64Ga0306918_109432241 65Ga0318552_106659551 66Ga0318529_101054052 67Ga0318548_102423732 68Ga0318557_100232323 69Ga0318497_101498561 70Ga0318568_105124601 71Ga0310917_102392572 72Ga0306919_105986701 73Ga0306919_109509891 74Ga0306919_111172891 75Ga0306919_113935151 76Ga0306925_103647632 77Ga0306925_106944751 78Ga0306925_108234012 79Ga0306925_113495412 80Ga0306923_103118084 81Ga0306923_103911181 82Ga0306923_106964681 83Ga0306923_112331682 84Ga0306921_104017363 85Ga0310912_100971193 86Ga0310912_104262633 87Ga0310912_108734251 88Ga0310916_100087831 89Ga0310916_105073291 90Ga0310910_108576592 91Ga0310909_106464472 92Ga0310909_112449491 93Ga0306926_108083483 94Ga0306926_112993251 95Ga0306926_117496631 96Ga0306922_100804753 97Ga0306922_110306242 98Ga0306922_110489351 99Ga0318569_103959852 100Ga0318559_101077731 101Ga0318532_102424201 102Ga0318518_104865242 103Ga0306920_1033289091
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120 1Ga0066395_100795493 2Ga0126374_116245081 3Ga0126370_104941651 4Ga0182041_100750774 5Ga0182041_102045003 6Ga0306923_106964681
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120 1Ga0066395_100795493 2Ga0126374_116245081 3Ga0126370_104941651 4Ga0182041_100750774 5Ga0182041_102045003 6Ga0306923_106964681
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.33% β-sheet: 0.00% Coil/Unstructured: 41.67%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF07238	PilZ	4.85
PF01740	STAS	4.85
PF13701	DDE_Tnp_1_4	1.94
PF01872	RibD_C	1.94
PF13826	DUF4188	0.97
PF15780	ASH	0.97
PF03795	YCII	0.97
PF00034	Cytochrom_C	0.97
PF00282	Pyridoxal_deC	0.97
PF13683	rve_3	0.97

Showing 1 to 10 of 12 entries

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COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.88
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.94
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.94
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	0.97
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.97
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.97
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.97
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.97
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.97

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	36.89 %
Unclassified	root	N/A	63.11 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	36.89 %
Unclassified	root	N/A	63.11 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.89 %
Unclassified	root	N/A	63.11 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	27.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %
Unclassified	root	N/A	63.11 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %
Unclassified	root	N/A	63.11 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	18.45 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.45 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %
Unclassified	root	N/A	63.11 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.45 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %
Unclassified	root	N/A	63.11 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.45 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1.94 %
Unclassified	root	N/A	63.11 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004633\|Ga0066395_10079549	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1531	Open in IMG/M
3300005332\|Ga0066388_100075854	All Organisms → cellular organisms → Bacteria	3700	Open in IMG/M
3300005332\|Ga0066388_100142601	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2962	Open in IMG/M
3300005764\|Ga0066903_101214286	Not Available	1401	Open in IMG/M
3300005764\|Ga0066903_101298478	Not Available	1359	Open in IMG/M
3300005764\|Ga0066903_102344720	Not Available	1031	Open in IMG/M
3300005764\|Ga0066903_107973535	Not Available	543	Open in IMG/M
3300009792\|Ga0126374_11624508	Not Available	535	Open in IMG/M
3300010048\|Ga0126373_10197018	Not Available	1950	Open in IMG/M
3300010048\|Ga0126373_10240220	All Organisms → cellular organisms → Bacteria → Acidobacteria	1777	Open in IMG/M

Showing 1 to 10 of 103 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	16.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.50%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	68.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.56%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	39.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.13%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	16.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.56%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M

Showing 1 to 10 of 61 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066395_100795493	3300004633	Tropical Forest Soil	VKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR*
Ga0066388_1000758541	3300005332	Tropical Forest Soil	MREVGAGRATETVVNVQPILNRRLDALSEWFLKQGFALTWRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR*
Ga0066388_1001426014	3300005332	Tropical Forest Soil	MRDVSARRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR*
Ga0066903_1012142863	3300005764	Tropical Forest Soil	VKVQPISHRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPVADMTGDEKEHADEAMRMFREEDR*
Ga0066903_1012984782	3300005764	Tropical Forest Soil	MRHVGAGRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR*
Ga0066903_1023447202	3300005764	Tropical Forest Soil	VKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPRADMTGDEKEHADEV
Ga0066903_1079735351	3300005764	Tropical Forest Soil	VKVQPISNRLLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRM
Ga0126374_116245081	3300009792	Tropical Forest Soil	DVLSERLLKHGFALTQRNWCELKKTVNSDEPPADMTGDEKEHADEVMRIFREEDR*
Ga0126373_101970182	3300010048	Tropical Forest Soil	VKVQPISNRRLDALSEWFLRHGLALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRLFREEDR*
Ga0126373_102402202	3300010048	Tropical Forest Soil	MVVKAQPISNRRLDVLSEWYLKQGFALTWHNWCELKKKVNPDEPLADMTGDEKEYADEAMRMFREEDR*
Ga0126373_102727521	3300010048	Tropical Forest Soil	VVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDETLADMTGDEKEHADKVMRMFREEDR*
Ga0126370_104941651	3300010358	Tropical Forest Soil	MRNLEPARAKAILATMRDVSARRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR*
Ga0126378_117928902	3300010361	Tropical Forest Soil	RSLEPARATAILATMRHVGAGRAAETVVKMQPISNRRLDVLSERLLKHGFALTQRNWCELKKKVNSDEPPADMTGDEKEHADEVMRIFREEDR*
Ga0126381_1007353272	3300010376	Tropical Forest Soil	VKVQPISNRRLDALSEWFLRHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRLFREEDR*
Ga0126381_1023829081	3300010376	Tropical Forest Soil	QPISNRRLDALSEWFLKHGFALTQRNWCDLKKKVNSDEPLADMTGDEKEDADEAMRMFREEDS*
Ga0126369_101875872	3300012971	Tropical Forest Soil	MRDVSARRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDETLADMTGDEKEHADKVMRMFREEDR*
Ga0126369_113540542	3300012971	Tropical Forest Soil	VKVQPISHRRLDALSEWFLKHGFALTQRNWCELKKKVNPDEPLADMTGGEKEYADEAMRMFREEDR*
Ga0182036_100737793	3300016270	Soil	MRSLEPARATAILATMSEVGTGRATDTVAKVRPISNRRLDALSEWFLKQGFALTWRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0182036_102280794	3300016270	Soil	SLEPARATAILATMREVGAGRATETVVKVQPISNGRLDALGEWFLKQCFALTSRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMLREEDR
Ga0182041_100750774	3300016294	Soil	MTNDAGLHEILHVALDNAIVRSLEPARATAILATMSEVGAVRATETVVKVQPISNRRLNALSEWFLEHGFALTRRNWCEFKKKVNSDEPLADMTGDEREHADEVMRIFREEDR
Ga0182041_102045003	3300016294	Soil	MSEVGTGRATDTVAKVRPISNRRLDALSEWFLKQGFALTWRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFRE
Ga0182041_105044542	3300016294	Soil	DALGEWFLKQCFALTSRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0182033_106096291	3300016319	Soil	VKVQPISSRRLDVLSERLLKHGFALTQRNWCELKKKVNSDEPPADMTGDEKEHADEVMRIFREEDR
Ga0182033_117513361	3300016319	Soil	MGEAGAGRATKTVVKVQPISNRRLDAVSEWFLKQAFALTWRNWCELKKKVNSDETLADMTGDEKEYADEAMRMFREEDR
Ga0182032_106448791	3300016357	Soil	MSEVGTGRATDTVAKVRPISNRRLDALSEWFLKQGFALTWRNWCELKKKVNSDEPLADMTGDEKEHADE
Ga0182034_105734751	3300016371	Soil	MSEVGTGRATDTVAKVRPISNRRLDALSEWFLKQGFALTWRNWCELKKKVNSDETLADMTGDEKEHADKVMRMFREEDR
Ga0182037_102431861	3300016404	Soil	ILATMRDVGAGRATEMVVKVQPISNRRPDALSEWYLKQGFALTWRNWCELKKKINPDEPLAYMTGDEKEYADEAMRMFREEDR
Ga0182037_105389321	3300016404	Soil	MREVGAGRATETVVKVQPISNRRLDALSEWFLKHGFALTRRNWCELKKKVHSDEPLADMTRDEKEHADDAMRMFREEDR
Ga0182037_112163541	3300016404	Soil	MVVKVQPISNRRLDALSEWFLKHGFALTRRNWCELKKKVNSDEPLADMTGDEKEHADEVMRIFREEDR
Ga0182039_101815693	3300016422	Soil	VKVQPISNRRLDALSEWFLKHGFALTRRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0182039_107432341	3300016422	Soil	PISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0182039_107469101	3300016422	Soil	MVVKVQPISNRRLDALSEWFLKHGFALTRRNWCELKKKVNSDEPLADMTGDEKEHAD
Ga0182039_119409872	3300016422	Soil	VKVQPISNGRLDALGEWFLKQCFALTSRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFR
Ga0182039_120253551	3300016422	Soil	AILATMSEVGAGRATETVVKVQPISNRRPDALSEWYLKQGFALTWRNWCELKKKINPDEPLAYMTGDEKEYADEAMRMFREEDR
Ga0182039_121866882	3300016422	Soil	DALSEWFLKQGFALTWRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0126371_100480581	3300021560	Tropical Forest Soil	QPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0126371_103849053	3300021560	Tropical Forest Soil	MVVKAQPISNRRLDVLSEWCLKQGFALTWHNWCELKKKVNPDEPLADMTGDEKEYADEAMRMFREEDR
Ga0126371_105958221	3300021560	Tropical Forest Soil	VKVQPISHRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPVADMTGDEKEHADEAMRMFREEDR
Ga0126371_123500721	3300021560	Tropical Forest Soil	VKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDETLADMTGDEKEHADKVMRMFREEDR
Ga0126371_129173052	3300021560	Tropical Forest Soil	VKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0207820_1068122	3300026809	Tropical Forest Soil	MRDVGARRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0207859_10175721	3300026859	Tropical Forest Soil	PISNRPLDAPSEWFLKQGFALTWRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0207746_10148392	3300026865	Tropical Forest Soil	VKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0207858_10042114	3300026909	Tropical Forest Soil	DVVKVQPISNRPLDAPSEWFLKQGFALTWRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0207779_10043663	3300026928	Tropical Forest Soil	MRNLEPARLATMRDVGARRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLTDMTGDEKEHADEVMRMFREEDR
Ga0207743_10086803	3300026945	Tropical Forest Soil	WLRCDVGARRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0207803_10310621	3300027000	Tropical Forest Soil	YGDVVKVQPISNRPLDAPSEWFLKQGFALTWRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0207722_10292571	3300027003	Tropical Forest Soil	MRDVGARRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0207776_10391142	3300027035	Tropical Forest Soil	VKVQPISNRPLDAPSEWFLKQGFALTWRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0207761_10244371	3300027516	Tropical Forest Soil	MRNLEPARLATMRDVGARRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0318516_107959811	3300031543	Soil	VVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDETLADMTGDEKEHADKVMRMFREEDR
Ga0318534_108427002	3300031544	Soil	MREVGAGRATETVVKVQPISNRRLDALSEWFLKRGFALTRRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0318541_108589741	3300031545	Soil	ILATMSEVGAVRATETVVKVQPISNRRLNALSEWFLEHGFALTRRNWCELKKKVNSDETLGDMTGDEKEHADEAMRIFREEDR
Ga0318538_101293523	3300031546	Soil	MRNLEPARAKAILATMRHVGAGRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0318538_108204921	3300031546	Soil	MTNDAGLHEILHVALDNAIVRSLEPARATAILATMSEVGAVRATETVVKVQPISNRRLNALSEWFLEHGFALTRRNWCELKKKVNSDETLGDMTGDEKEHADEAMRIFREEDR
Ga0318528_103237901	3300031561	Soil	MRHVGAGRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0310915_106071621	3300031573	Soil	MREVGAGRATETVVKVQPISNRRLDALSEWFLKHGFALTRRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0318561_107607511	3300031679	Soil	VVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0318574_101274222	3300031680	Soil	VKVQPISNRRLNALSEWFLEHGFALTRRNWCELKKKVNSDETLGDMTGDEKEHADEAMRIFREEDR
Ga0318560_103479281	3300031682	Soil	VKVQPISNGRLDALGEWFLKQCFALTWRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0306917_108599051	3300031719	Soil	MRSLEPARATAILATMSEVGAGRATETVVKVQPISNRRPDALSEWYLKQGFALTWRNWCELKKKINPDEPLAYMTGDEKEYADEAMRMFREEDR
Ga0318501_107155521	3300031736	Soil	MRSLEPARATAILATVRHVGAGRATETVVKVQPISSRRLDVLSERLLKHGFALTQRNWCELKKKVNSDEPPADMTGDEKEHADEVMRIFREEDR
Ga0306918_101414963	3300031744	Soil	RDVSARRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0306918_109432241	3300031744	Soil	MRDVGAGRATEMVVKVQPISNRRLDALSEWFLKHGFALTRRNWCELKKKVNSDEPLADMTGDEKEHADEAMR
Ga0318552_106659551	3300031782	Soil	LATMREVGAGRATETVVKVQPISNGRLDALGEWFLKQCFALTSRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0318529_101054052	3300031792	Soil	MRGLEPARATAILATMREVGAGRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0318548_102423732	3300031793	Soil	AHFSMSTCRVRQRHRMRNLEPARAKAILATMRHVGAGRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0318557_100232323	3300031795	Soil	VKVQPISNRRLDALGEWFLKQCFALTSRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0318497_101498561	3300031805	Soil	MSTCRVRQRHRMRNLEPARAKAILATMRHVGAGRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0318568_105124601	3300031819	Soil	MRHVGAGRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0310917_102392572	3300031833	Soil	VKVQPISNGRLDALGEWFLKQCFALTSRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0306919_105986701	3300031879	Soil	ARAKAILATMRDVSARRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0306919_109509891	3300031879	Soil	HRMRSLEPARATAILATMGEAGAGRATKTVVKVQPISNRRLDAVSEWFLKQAFALTWRNWCELKKKVNSDETLADMTGDEKEYADEAMRMFREEDR
Ga0306919_111172891	3300031879	Soil	MSEVGTGRATDTVAKVRPISNRRLDALSEWFLKQGFALTWRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0306919_113935151	3300031879	Soil	QRHRMRSLEPARATAILATMSEVGAGRATETVVKVQPISNRRPDALSEWYLKQGFALTWRNWCELKKKINPDEPLAYMTGDEKEYADEAMRMFREEDR
Ga0306925_103647632	3300031890	Soil	MRDVSARRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0306925_106944751	3300031890	Soil	DALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0306925_108234012	3300031890	Soil	VKVQPISNRRLDALSEWFLKHGFALTRRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0306925_113495412	3300031890	Soil	ETVVKVQPISNRRPDALSEWYLKQGFALTWRNWCELKKKINPDEPLAYMTGDEKEYADEAMRMFREEDR
Ga0306923_103118084	3300031910	Soil	MRDVGAGRATEMVVKVQPISNRRLDALSEWFLKHGFALTRRNWCELKKKVNSDEPLADMTGDEKEHADEVMRIFREEDR
Ga0306923_103911181	3300031910	Soil	MRSLEPARATAILATMGEAGAGRATKTVVKVQPISNRRLDAVSEWFLKQAFALTWRNWCELKKKVNSDETLADMTGDEKEYADEAMRMFREEDR
Ga0306923_106964681	3300031910	Soil	VKVQPISNGRLDALGEWFLKQCFALTSRNWCELKKKVNSDEPLADMTGDEKEHA
Ga0306923_112331682	3300031910	Soil	RATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0306921_104017363	3300031912	Soil	VKVQPISNRRPDALSEWYLKQGFALTWRNWCELKKKINPDEPLAYMTGDEKEYADEAMRMFREEDR
Ga0310912_100971193	3300031941	Soil	MRSLEPARATAILATMREVGAGRATETVVKVQPISNGRLDALGEWFLKQCFALTSRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0310912_104262633	3300031941	Soil	VKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEV
Ga0310912_108734251	3300031941	Soil	MRDVGAGRATEMVVKVQPISNRRLDALSEWFLKHGFALTRRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMF
Ga0310916_100087831	3300031942	Soil	MSEVGTGRATDTVAKVRPISNRRLDALSEWFLKQGFALTWRNWCELKKKVNSDEPLADMTGDEKEHADEAMRM
Ga0310916_105073291	3300031942	Soil	VKVQPISNGRLDALGEWFLKQCFALTSRNWCELKKKVNSDEPLADMTGDEKEHADEAM
Ga0310910_108576592	3300031946	Soil	MRGLEPARATAILATMREVGAGRATETVVKVQPISNRRLDALSEWFLKHGFALTRRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0310909_106464472	3300031947	Soil	MRSLEPARATAILATMREVGAGRATETVVKVQPISNRRLDALSEWFLKHGFALTRRNWCELKKKVNSDEPLADMTGDEKEHADEAMR
Ga0310909_112449491	3300031947	Soil	DVLSERLLKHGFALTQRNWCELKKKVNSDEPPADMTGDEKEHADEVMRIFREEDR
Ga0306926_108083483	3300031954	Soil	VQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0306926_112993251	3300031954	Soil	RQRHRMRSLEPARATAILATMSEVGAGRATETVVKVQPISNRRPDALSEWYLKQGFALTWRNWCELKKKINPDEPLAYMTGDEKEYADEAMRMFREEDR
Ga0306926_117496631	3300031954	Soil	TCRVRQRHRMRNLEPARAKAILATMRHVGAGRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0306922_100804753	3300032001	Soil	MSEVGAGRATETVVKVQPISNRRPDALSEWYLKQGFALTWRNWCELKKKINPDEPLAYMTGDEKEYADEAMRMFREEDR
Ga0306922_110306242	3300032001	Soil	VKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDETLADMTGDEKEHADKVMRMFREE
Ga0306922_110489351	3300032001	Soil	LEPARATAILATMREVGAGRATETVVKVQPISNRRLDALSEWFLKHGFALTRRNWCELKKKVNSDEPLADMTGDEKEHADEAMRMFREEDR
Ga0318569_103959852	3300032010	Soil	VSARRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0318559_101077731	3300032039	Soil	AILATMRHVGAGRATETVVKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDEPLADMTGDEKEHADEVMRMFREEDR
Ga0318532_102424201	3300032051	Soil	VKVQPISNRRLDALSEWFLKHGFALTQRNWCELKKKVNSDETLADMTGDEKEHADKVMRMFR
Ga0318518_104865242	3300032090	Soil	MSEVGAVRATETVVKVQPISNRRLNALSEWFLEHGFALTRRNWCELKKKVNSDETLGDMTGDEKEHADEAMRIFREEDR
Ga0306920_1033289091	3300032261	Soil	ARATAIRATVRHVGAGRATETVVKVQPISSRRLDVLSERLLKHGFALTQRNWCELKKKVNSDEPPADMTGDEKEHADEVMRIFREEDR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F098422

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences