NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F098273

Metagenome Family F098273

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F098273
Family Type Metagenome
Number of Sequences 104
Average Sequence Length 98 residues
Representative Sequence PAPAPLWQRRPLTLEERALELEQFEKAMRSQKRSLYLRFGFEYVVWFFVGLSLMYWSFRTTDSRYAGLFFFGGIGLGDAGMLLTLIRARKEAERCGLL
Number of Associated Samples 93
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 25.96 %
% of genes near scaffold ends (potentially truncated) 35.58 %
% of genes from short scaffolds (< 2000 bps) 70.19 %
Associated GOLD sequencing projects 89
AlphaFold2 3D model prediction Yes
3D model pTM-score0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(24.038 % of family members)
Environment Ontology (ENVO) Unclassified
(44.231 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(38.462 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.
1A5_v_00205800
2A_all_C_00630610
3AL20A1W_10061266
4AL16A1W_100279981
5JGI20187J14854_10011263
6A1565W1_112683811
7A1565W1_113411302
8JGI25613J43889_101665671
9Ga0063454_1021091332
10Ga0062589_1014617842
11Ga0062595_1004875342
12Ga0062594_1014173111
13Ga0066676_101423044
14Ga0070692_100956324
15Ga0070694_1018689701
16Ga0070707_1001276414
17Ga0070698_1003895041
18Ga0070684_1001803751
19Ga0070697_1006839182
20Ga0070695_1001318023
21Ga0070695_1010945482
22Ga0075282_10125401
23Ga0099793_105688362
24Ga0104322_1443134
25Ga0099829_102135601
26Ga0105245_100440672
27Ga0066709_1038662701
28Ga0099796_102628532
29Ga0136218_100019410
30Ga0134126_123751791
31Ga0137438_10555063
32Ga0120164_10549242
33Ga0120146_10128922
34Ga0120148_10110043
35Ga0120148_10212532
36Ga0120174_10893372
37Ga0137389_100121635
38Ga0137364_106695472
39Ga0137383_100297414
40Ga0137382_101499381
41Ga0137363_109122561
42Ga0137399_113082032
43Ga0137381_107052491
44Ga0137379_108280933
45Ga0137377_100227428
46Ga0137377_116251392
47Ga0137370_107891472
48Ga0137387_105245502
49Ga0137360_115612611
50Ga0137361_106887552
51Ga0137397_107736271
52Ga0137395_101271632
53Ga0137359_101209453
54Ga0137419_100158453
55Ga0137419_103854152
56Ga0137407_101939222
57Ga0134077_104162501
58Ga0120127_100035004
59Ga0120171_10470612
60Ga0120104_10969212
61Ga0167639_10072562
62Ga0167638_10082363
63Ga0184618_101518542
64Ga0184618_102459512
65Ga0193744_10824472
66Ga0193715_10304173
67Ga0193723_10199851
68Ga0193729_10237694
69Ga0193751_10534643
70Ga0193731_10180082
71Ga0193730_10657001
72Ga0193730_11183502
73Ga0193735_10008441
74Ga0193735_100124310
75Ga0193749_10369162
76Ga0193734_10054114
77Ga0193733_11101061
78Ga0193733_11190152
79Ga0193745_10264802
80Ga0193716_10099651
81Ga0193699_100013198
82Ga0193698_100028110
83Ga0222622_113687942
84Ga0207929_10011797
85Ga0208078_10003423
86Ga0207684_101879632
87Ga0207654_105178022
88Ga0207707_100274245
89Ga0207652_100270455
90Ga0207646_100964764
91Ga0207665_105278772
92Ga0209472_12603861
93Ga0209470_13287511
94Ga0209180_101598071
95Ga0209590_100270224
96Ga0307305_100294225
97Ga0307305_105663272
98Ga0307312_100162255
99Ga0307312_101565011
100Ga0307277_105033171
101Ga0307308_106210372
102Ga0307468_1002777251
103Ga0307472_1008372442
104Ga0370484_0000130_6778_7083
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 62.70%    β-sheet: 0.00%    Coil/Unstructured: 37.30%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090PAPAPLWQRRPLTLEERALELEQFEKAMRSQKRSLYLRFGFEYVVWFFVGLSLMYWSFRTTDSRYAGLFFFGGIGLGDAGMLLTLIRARKEAERCGLLCytopl.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.58
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
100.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Soil
Groundwater Sediment
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Glacier Forefield Soil
Grasslands Soil
Permafrost Soil
Soil
Arctic Peat Soil
Permafrost
Soil
Soil
Grasslands Soil
Hardwood Forest Soil
Untreated Peat Soil
Rice Paddy Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Soil
23.1%24.0%2.9%2.9%11.5%2.9%9.6%2.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
A5_v_002058002124908036SoilVPESTLRVHPWHRPPLTLEERALEIEQLEKELRRQTRSLYLHYGLEYAAWFSIGLFLLGWSMHTTDSRYAGLAFWGGLILGDGGMILTLVRARHEAEKRGL
A_all_C_006306102140918007SoilLPDSPAPATLWPRRALTLEERALELEQFERETKSQKTALYLRYGFEYLVWFVVGLFLLFWSFHTTDSIYAGIAFFGGIGLGDAGMLMTLIRARKEAERCGLL
AL20A1W_100612663300000880PermafrostVPESTLRVHPWHRPPLTLEERALELEQLEKELRKQTRSLYLRYGLEYAVWFSIGLFLLGWSMHTTDSRYAGAAFWGGLILGDGGMLLTLVRARREAEKLGL*
AL16A1W_1002799813300000887PermafrostPYLWTRPTPTLEERALEIEELEKSLRAQTRYLYARYGLEYLVWFIVGVFLLGWSMHTTDTRYAGLAFWGGLCLGDAGMLSTLIRARHDAERRGLY*
JGI20187J14854_100112633300001406Arctic Peat SoilVSEPNVSTHSWNRRPLTLEERALEIEQREKEFRRQTRSLYLRYGLEYAVWFSIGVFLLGWSMHTTDSRYAGLAFWGGLILGDGGMILTLVRARHEAEKRGL*
A1565W1_1126838113300001536PermafrostMKRELPEPRPGPYLWTRPTPTLEERALEIEELEKSLRAQTRYLYARYGLEYLVWFIVGVFLLGWSMHTTDTRYAGLAFWGGLCLGDAGMLSTLIRARHDAERRGLY*
A1565W1_1134113023300001536PermafrostMPDEVEARPRSYVWTRPRQTPEERALEIEQFEKETRAQTRYLYLRYGFEYLVWLIVGLFLLFWSLHTTDTRYAGLAFWGGIGAGDAGMLWTLIRARYDAERRGLY*
JGI25613J43889_1016656713300002907Grasslands SoilLTLEERALELERFEKEMRSQKRSLYLHFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL*
Ga0063454_10210913323300004081SoilPDSARTEPSVWQRTRPSPDERALELEAFEQSRRASTRHLYLRYGPEYFVWFVVGLYLMFWSFHTTDTRYAGLAFWGGIGLGDAGMLWTLVRARQEAERCGLM*
Ga0062589_10146178423300004156SoilMTEPRTSPYVWQRRKLTMEERAIELEQFECELRAQTRALWMRYAPEYVVWFVVGIFLMFWSFHTTDTRYAGLCFWGGIGLGDAGMLWTLIRARQDAEKRGLY*
Ga0062595_10048753423300004479SoilMNQVQSPDSIRQESSVWQRPRPTPDERARELEEFERSRKASMRSIYVRYGSEYLLWLTVGLFLLFWSFHTTDTRYAGLAFWGGIGLGDGGMLMALVRARRDMEKCGLI*
Ga0062594_10141731113300005093SoilPDVTARQSSVWQRTRPTQEERALELEQFEDARRAGMRWLFLRYGLEYLIWFVVGMYLLFWSFHTTDTRYAGLAFWGGIGLGDAGMLFTLIRARNEAERCGLM*
Ga0066676_1014230443300005186SoilKHSLWQRPKPTPEERALELEEFERSRRASARYLYLRYGFEYLVWLIVGLFLMFWSFHTTDTRYASLAFWGGIGLGDGGMLLTLIRARNEAERCGLT*
Ga0070692_1009563243300005345Corn, Switchgrass And Miscanthus RhizosphereRTPRALNSNPMTEPRTSPYVWQRRKLTMEERAIELEQFECELRAQTRALWMRYAPEYVVWFVVGIFLMFWSFHTTDTRYAGLCFWGGIGLGDAGMLWTLIRARQDAEKRGLY*
Ga0070694_10186897013300005444Corn, Switchgrass And Miscanthus RhizosphereNGPRPPNPLPDSPATAPVWHRRSLTLEERALELERFEKEIRSQKRSLYLHFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL*
Ga0070707_10012764143300005468Corn, Switchgrass And Miscanthus RhizosphereLTLEERALELERFEKEIRSQKRSLYLHFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL*
Ga0070698_10038950413300005471Corn, Switchgrass And Miscanthus RhizosphereRSQKRSLYLHFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL*
Ga0070684_10018037513300005535Corn RhizosphereRTSPYVWQRRKLTMEERAIELEQFECELRAQTRALWMRYAPEYVVWFVVGIFLMFWSFHTTDTRYTGLCFWGGIGHGDAGMLWTLIRARQDAEKRGLY*
Ga0070697_10068391823300005536Corn, Switchgrass And Miscanthus RhizosphereLSTQSRQGSVWQRPRPTPDERALELEEFERSQRAISRYLYLRFGVEYLIWLIVGLFLLFWSFHTTDTRYADLAFWGGIGLGDGGMLMTLIRARHEAERCGLIS*
Ga0070695_10013180233300005545Corn, Switchgrass And Miscanthus RhizosphereMNQVQSPDSIRQESSVWQRPRPTPDERAQELEEFERSRKASMRSIYVRYGSEYLLWLTVGLFLLFWSFHTTDTRYAGLAFWGGIGLGDGGMLMALVRARRDMEKCGLI*
Ga0070695_10109454823300005545Corn, Switchgrass And Miscanthus RhizosphereMESPGRALSTQSRQGSVWQRPRPTPDERALELEEFERSQRAISRYLYLRFGVEYLIWLIVGLFLLFWSFHTTDTRYADLAFWGGIGLGDGGMLMTLIRARHEAERCGLIS*
Ga0075282_101254013300005896Rice Paddy SoilMEDRAREIELFEKEQRSQKRALYLRYGAEYLLWFAVGGFLLFWSFHTTDPRYAKLAFWSGIGLGDGGMLMAMIRGRQEGERRGIL*
Ga0099793_1056883623300007258Vadose Zone SoilLTLEERALELERFEKEMRAQKRSLYLHFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL*
Ga0104322_14431343300007819Permafrost SoilMSEQTTSPYVWQRRKLTMEERAIELEQFERELKAQTRALWLRYAPEYLVWFVVGIFLMFWSFHTTDTRYAGLCFWGGIGLGDAGMLWTLIRARHDAENRGLY*
Ga0099829_1021356013300009038Vadose Zone SoilLNGPRPPNRLPDSPAPAPLWHRRALTLEERALELEQFEREIRSQKRSLYLRFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL*
Ga0105245_1004406723300009098Miscanthus RhizosphereMEERAIELEQFECELRAQTRALWMRYAPEYVVWFVVGIFLMFWSFHTTDTRYAGLCFWGGIGLGDAGMLWTLIRARQDAEKRGLY*
Ga0066709_10386627013300009137Grasslands SoilRALELEQFEQARRAGVRSILLRYGFEYVVWFIIGIYLLFWSFHTTDTRYAGLAFWGGIGLGDAGMLFTLIRGRHEAERCGLM*
Ga0099796_1026285323300010159Vadose Zone SoilERFEKEMRSQKRSLYLHFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL*
Ga0136218_1000194103300010229SoilVTASASPPQLWHRPAETMEDRAREIELFEKEQRSQKRALYLRYGAEYLLWFAVGGFLLFWSFHTTDPRYAKLAFWSGIGLGDGGMLMAMIRGRQEGERRGIL*
Ga0134126_1237517913300010396Terrestrial SoilPAQNFKRMNQVQSPDSIRQESSVWQRPRPTPDERARELEEFERSRKASMRSIYVRYGSEYLLWLTVGLFLLFWSFHTTDTRYAGLAFWGGIGLGDGGMLMALVRARRDMEKCGLI*
Ga0137438_105550633300011431SoilVPEPTLHVHPWHRRPLTLEERALELEQQEKELRRRTRFLYLRFGLEYAVWFSVGVFLLGWSLHTTDSRYAGLAFWGGLGLGDAGMLVTLIRARREVSKLGLN*
Ga0120164_105492423300011987PermafrostRPTPTLEERALEIEELEKSLRAQTRYLYARYGLEYLVWFIVGVFLLGWSMHTTDTRYAGLAFWGGLCLGDAGMLSTLIRARHDAERRGLY*
Ga0120146_101289223300011992PermafrostMSEQSPSPHVWQRHKLTLEERASELEQFERELRAQTRALWARYAPEYVVWFVVGIFLMFWSFHTTDTRYAGLCFWGGIGLGDAGMLWTLIRARQDAEKRGLY*
Ga0120148_101100433300011999PermafrostMSEQTTSPYVWQRRKLTMEERAIELEQFERELKAQTRALWLRYAPEYLVWFVVGIFLMFWSFHTTDTRYAGLCFWGGIGLGDAGMLWTLIRARNDAENRGLY*
Ga0120148_102125323300011999PermafrostMPDETEARPRSYVWTRPRQTPEERALEIEQFEKETRAQTRYLYLRYGFEYLVWLIVGLFLLFWSFHTTDTRYAGLAFWGGIGAGDAGMLWTLIRARHDAERRGLY*
Ga0120174_108933723300012008PermafrostMPDEARNCLSRVLVLTYGPRPTPTLEERALEIEELEKSLRAQTRYLYARYGLEYLVWFIVGVFLLGWSMHTTDTRYAGLAFWGGLCLGDAGMLSTLIRARHDAERRGLY*
Ga0137389_1001216353300012096Vadose Zone SoilLPDSPAPAPLWHRRALTLEERALELEQFEREIRSQKRSLYLRFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL*
Ga0137364_1066954723300012198Vadose Zone SoilVPDSSAQESSVWQRPRPTPDERALELEQFEQARRAGLRSILLRYGFEYVVWFIIGIYLLFWSFHTTDTRYAGLAFWGGIGLGDA
Ga0137383_1002974143300012199Vadose Zone SoilLTLAERALELERFEREMRSQKRSLYLHFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL*
Ga0137382_1014993813300012200Vadose Zone SoilGKSHPRRNEPSGGFSATALDSSMMNLFSPMTSTSAPVWHRRSLTLEERALELERFENEMRSQKRSLYLHFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL*
Ga0137363_1091225613300012202Vadose Zone SoilMMNLFSPMTSTSAPVWHRRSLTLEERALELERFENEMRSQKRSLYLHFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL*
Ga0137399_1130820323300012203Vadose Zone SoilLEVPLWHRPKPTIEERAQELERWEREARRQKRALYLRYGTEYAVWFVIGLFLMFWSFHTTDTRYAGLAFWGGIGVGDAGMLLALIRAR
Ga0137381_1070524913300012207Vadose Zone SoilEIYSSGKGCPRRTSGIWSAPIPLPESTREQSSVWQRPRPTADERALELEEFEKSRRASIRSIYLRFGFEYLVWLAIGLFLLFWSFHTTDTRYAGLAFWGGIGLGDGGMLLALVRARREMERCGLI*
Ga0137379_1082809333300012209Vadose Zone SoilLTLEERALELERFEKEMRSQKRSLYLHFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKE
Ga0137377_1002274283300012211Vadose Zone SoilVIDRPFSTALWHRQPVTLEERALQLEQLERETRIQKRSLYIRYGLEYLLWFVIGGFLLFWSFHTTDSRYARLAFWGGIGLGDGGMLMALIRARHEAERCGLL*
Ga0137377_1162513923300012211Vadose Zone SoilWQRPKPTPEERALELEEFERSRRASARYLYLRYGFEYLVWLIVGLFLMFWSFHTTDTRYASLAFWGGIGLGDGGMLLTLIRARNEAERCGLT*
Ga0137370_1078914723300012285Vadose Zone SoilVSEPTLRVHPWLRPPPTPEGRALELEQNEKELRKQTRSLYLRYGFEYAVWFIAGLYLLFWSMHTTDTRYAGLAFWGGMGLGDGGMLWTLIRARSEAERIGLT*
Ga0137387_1052455023300012349Vadose Zone SoilLTLAERALELERFEKEMRSQKRSLYLHFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL*
Ga0137360_1156126113300012361Vadose Zone SoilLPDSPAPAPLWHRRALTLEERALELEQFEREIRSQKRSLYLRFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGL
Ga0137361_1068875523300012362Vadose Zone SoilMMNLFSPMTSTSAPVWHRRSLTLEERALELERFENEMRSQKRSLYLHFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLF*
Ga0137397_1077362713300012685Vadose Zone SoilLEAPLWHRPKPTIEERAQELERWERETRRQKRALYLRYGTEYAVWFVIGLFLLFWSFHTTDSRYAKLALWGGIGVGDGGMLLALVRARKEAERCGLL*
Ga0137395_1012716323300012917Vadose Zone SoilLTLEERALELERFEKELRAQKRSLYLHFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL*
Ga0137359_1012094533300012923Vadose Zone SoilLEAPLWYRPKPTLEERALELERWERETRRQKRALYLRYGTEYALWFVIGIFLLFWSFHTTDSRYAKLSFWGGIGVGDGGMLLALIRARKEAERCGLL*
Ga0137419_1001584533300012925Vadose Zone SoilLTLEERALELERFEKEMRSQKRSLYLHFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGFGLGDAGMLMTLIRARKEAERCGLL*
Ga0137419_1038541523300012925Vadose Zone SoilLEAPLWHRPKPTIEERAQELERWERETRRQKRALYLRYGTEYAVWFVIGLFLLFWSFHTTDSRYAKLALWGGIGVGDGGMLLALIRARKEAERCGLL*
Ga0137407_1019392223300012930Vadose Zone SoilMASDIPTNPAADLAAKHSLWQRPKPTPEERALELEEFERSRRASARYLYLRYGFEYLVWLIVGLFLMFWSFHTTDTRYASLAFWGGIGLGDGGMLLTLIRARNEAERCGLT*
Ga0134077_1041625013300012972Grasslands SoilVWQRTRPSPEERALELEAFEKSRHASRRHLYLRYGPEYFVWFVIGLYLMFWSFHTADTRYAGLAFWGGIGLGDAGMLWTFIRGHQEAERCGLL*
Ga0120127_1000350043300013503PermafrostMEERANELEQFERELRAQTRALWVRYAPEYVVWFVVGIFLMFWSFHTTDTRYAALCFWGGIGLGDAGMLWTLIRARHDAEKRGLY*
Ga0120171_104706123300014827PermafrostVPESTLRVHPWHRPPLTLEERALELEQLEKELRKQTRSLYLRYGLEYAVWFSIGLFLLGWSMHTTDSRYAGLAFWGGLILGDGGMLLTLVRARREAEKLGL*
Ga0120104_109692123300014829PermafrostEQTTSPYVWQRRKLTMEERAIELEQFERELKAQTRALWLRYAPEYLVWFVVGIFLMFWSFHTTDTRYAGLCFWGGIGLGDAGMLWTLIRARNDAENRGLY*
Ga0167639_100725623300015080Glacier Forefield SoilVSEPNVSIHSWNRRPLTLEERALEIEQGEKEFRRQTRSLYLRYGLEYAVWFSIGLFLLGWSMHTTDSRYAGLAFWGGLILGDGGMILTLVRARHEAEKRGL*
Ga0167638_100823633300015197Glacier Forefield SoilVSEPNVSIHSWNRRPLTLEERALEIEQGEKEFRRQTRSLYLRYGLEYAVWFSIGLFLLGWSMHTTDSRYAGVAFWGGLILGDGGMILTLVRARHEAEKRGL*
Ga0184618_1015185423300018071Groundwater SedimentSDGYFRNGPGLPNPLPDSPAAAPVWQRRPLTLDERALELEQFERAMRSQKKSLYLRFGFEYVVWFFVGLSLMYWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL
Ga0184618_1024595123300018071Groundwater SedimentVSEPTLRVHPWHRPPLSPEQRALELEQLENELRRQTRFLYLRYGFEYVVWFIAGLYLLFWSMHTTDTRYADLAFWGGIGLGDGGMLWTLVRARSETERIGLT
Ga0193744_108244723300019874SoilMTEPRTSPYVWQRRKLTMEERAIELEQFERELRAQTRALWMRYAPEYVVWFVVGIFLMFWSFHTTDTRYAGLSFWGGIGLGDAGMLWTLIRARQDAEKRGLY
Ga0193715_103041733300019878SoilTLEERALELEQFEKAMRSQKRSLYLRFGFEYVVWFFVGLSLMYWSFRTTDSRYAGLFFFGGIGLGDAGMLLTLIRARKEAERCGLL
Ga0193723_101998513300019879SoilLEERALELEQFEKAMRSQKRSLYLRFGFEYVVWFFVGLSLMYWSFRTTDSRYAGLFFFGGIGLGDAGMLLTLIRARKEAERCGLL
Ga0193729_102376943300019887SoilLPDSHASAPLWHRRALTLEERALELEQFEKTMRSQKRSLYLRFGGEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL
Ga0193751_105346433300019888SoilLPDSPAAALLWQRRALTLEERALELEQFEKAMRSQKRSLYLRFGFEYVVWFFVGLSLMFWSFRTTDSRYAELFFFGGIGLGDAGMLMTLIRARKEAERCGLL
Ga0193731_101800823300020001SoilLPDSPAAAPVWQRRPLTLDERALELEQFERAMRSQKKSLYLRFGFEYVVWFFVGLSLMYWSFRTTDSRYAGLFFFGGIGLGDAGMLLTLIRARKEAERCGLL
Ga0193730_106570013300020002SoilNRRPLTLEERALELEQLERESRRQTRSLYLRYGLEYAVWFTIGLFLLGWSMHTTDSRYAALAFWGGLILGDGGMILTLVRARHESEKLGL
Ga0193730_111835023300020002SoilLPDSLTAAPLWHRRALTLEERALELEQFEKAVRSQKRSLYIRFGFEYIVWFFVGLSLMYWSFRTTDSRYAGLFFFGGIGLGDAGMLLTLIRAKKEAERCGLL
Ga0193735_100084413300020006SoilLELEQFEKAMRSQKRSLYLRFGFEYVVWFFVGLSLMYWSFRTTDSRYAGLCFFGGIGLGDAGMLLTLIRARKEAERCGLL
Ga0193735_1001243103300020006SoilMPDQPSLRVHPWQRRPLTLEERAIELEQFERELQKQKRLLYLRYGFEYAVWFIVGIFLLGWSLHTADTRYARLAFWGGIGLGDAGMLWALVRARNEAERLGL
Ga0193749_103691623300020010SoilMTEPRTSPYVWQRRKLTMEERAIELEQFERELRAQTRALWMRYAPEYVVWFVVGIFLMFWSFHTTDTRYAGLCFWGGIGLGDAGMLWTLIRARQDAEKRGLY
Ga0193734_100541143300020015SoilMPDQPSLRVHPWQRRPLTLEERAIELEQFERELQKQKRLLYLRDGFEYAVWFIVGIFLLGWSLHTADTRYARLAFWGGIGLGDAGMLWALVRARNEAERLGL
Ga0193733_111010613300020022SoilVSEPTLRVHPWHRPPLSPEQRALELEQLENELRRQTRFLYLRYGFEYVVWSIAGLYLLFWSMHTTDTRYADLAFWGGIGLGDGGMLWTLVRARSETERIGLT
Ga0193733_111901523300020022SoilLPDSPAAAPVWQRRPLTLEERALELEQFEKAMRSQKRSLYLRFGFEYVVWFFVGLSLMYWSFRTTDSRYAGLFFFGGIGLGDAGMLLTLIRARKEAERCGLL
Ga0193745_102648023300020059SoilMEERATELEQFERELRAQTRALWTRYAPEYVVWFVVGIFLMFWSLHTTDTRYAGLCFWGGIGLGDAGMLWTLIRARQDAEKRGLY
Ga0193716_100996513300020061SoilVPEPTLHVHPWHRPPLSPEERALEIERLEKETKSQKRALYLRYGFEYLVWFVVGIFLLFWSFRTTDSRYARLAFWGGIGLGDAGMLMALIRGRKEGERKGIL
Ga0193699_1000131983300021363SoilVTEPTLRVHPWLRPPLSPEERALEIEQTEKQLRKQTRSLYLRYGFEYAVWFIAGLFLLFWSMHTTDTRYAGLAFWGGMGLGDGGMLWTLVRARSEAERIGLT
Ga0193698_1000281103300021968SoilEPTLRVHPWLRPLLSPEERALEIEQTEKELRKQTRSLYLRYGFEYAVWFIAGLFLLFWSMHTTDTRYAGLAFWGGMGLGDGGMLWTLVRARSEAERIGLT
Ga0222622_1136879423300022756Groundwater SedimentVILPRQVSEPTLRVHPWLRPPLTPEERALELEQIEKELRKQTRSLYLRYGFEYAVWFIAGLFLLFWSMHTTDTRYAGLAFWGGMGLGDGGMLWTLVRARSEAERIGLT
Ga0207929_100117973300025505Arctic Peat SoilVSEPNVSTHSWNRRPLTLEERALEIEQREKEFRRQTRSLYLRYGLEYAVWFSIGVFLLGWSMHTTDSRYAGLAFWGGLILGDGGMILTLVRARHEAEKRGL
Ga0208078_100034233300025544Arctic Peat SoilVSEPNVSIHSWNRRPLTLEERALEIEQREKEFRRQTRSLYLRYGLEYAVWFSIGVFLLGWSMHTTDSRYAGLAFWGGLILGDGGMILTLVRARHEAEKRGL
Ga0207684_1018796323300025910Corn, Switchgrass And Miscanthus RhizosphereLTLEERALELERFEKEMRSQKRSLYLHFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL
Ga0207654_1051780223300025911Corn RhizosphereMTEPRTSPYVWQRRKLTMEERAIELEQFECELRAQTRALWMRYALEYVVWFVVGIFLMFWSFHTTDTRYAGLCFWGGIGLGDAGMLWTLIRARQDAEKRGLY
Ga0207707_1002742453300025912Corn RhizosphereMTEPRTSPYVWQRRKLTMEERAIELEQFECELRAQTRALWMRYAPEYVVWFVVGIFLMFWSFHTTDTRYAGLCFWGGIGLGDAGMLWTLIRARQDAEKRGLY
Ga0207652_1002704553300025921Corn RhizosphereMTEPRTSPYVWQRRKLTMEERAIELEQFECELRAQTRALWMRYAPEYVVWFVVGIFLMFWSFHTTDTRYAGLCFWGGIGLGDAGMLCTLIRARQDAEKRGLY
Ga0207646_1009647643300025922Corn, Switchgrass And Miscanthus RhizosphereLTLEERALELERFEKEIRSQKRSLYLHFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL
Ga0207665_1052787723300025939Corn, Switchgrass And Miscanthus RhizosphereSVWQRPRPTPDERALELEEFERSQRAISRYLYLRFGVEYLIWLIVGLFLLFWSFHTTDTRYADLAFWGGIGLGDGGMLMTLIRARHEAERCGLIS
Ga0209472_126038613300026323SoilSSVWQRPRPTPDERALELEEFERSRRASMRRIYVRYGFEYLVWFVVGLFLLFWSMHTIDGRYASLAFWGGIGLGDGGMLLALIRARHEMEKCGLI
Ga0209470_132875113300026324SoilRPKPTPEERALELEEFERSRRASARYLYLRYGFEYLVWLIVGLFLMFWSFHTTDTRYASLAFWGGIGLGDGGMLLTLIRARNEAERCGLT
Ga0209180_1015980713300027846Vadose Zone SoilPDSPAPAPLWHRRALTLEERALELEQFEREIRSQKRSLYLRFGFEYVVWFFVGLSLMFWSFRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL
Ga0209590_1002702243300027882Vadose Zone SoilLTLEERALELERFEKEMRSQKRSLYLHFGFEYVVWFFVGLSLMFWSVRTTDSRYAGLFFFGGIGLGDAGMLMTLIRARKEAERCGLL
Ga0307305_1002942253300028807SoilFPLMPDQPSLRVHPWQRRPLTLEERAIELEQFERELQKQKRLLYLRYGFEYAVWFIVGIFLLGWSLHTADTRYARLAFWGGIGLGDAGMLWALVRARNEAERLGL
Ga0307305_1056632723300028807SoilRPLTLEERALELEQFEKAMRSQKRSLYLRFGFEYVVWFFVGLSLMYWSFRTTDSRYAGLCFFGGIGLGDAGMLLTLIRARKEAERCGLL
Ga0307312_1001622553300028828SoilLADSPAPAPLWQRRPLTLEERALELEQFEKAMRSQKRSLYLRFGFEYVVWFFVGLSLMYWSFRTTDSRYAGLFFFGGIGLGDAGMLLTLIRARKEAERCGLL
Ga0307312_1015650113300028828SoilVSEPTLRVHPWQRPPVSPEERALELEQMEKELRRQTRLLYLRYGFEYAVWFIAGLYLLFWSMHTTDTRYADLAFWGGIGLGDGGMLWTLVRARSEMERIGLI
Ga0307277_1050331713300028881SoilLEAPLWHRPKPTLDERALELERLERETTHQKRALYLRYGGEYAFWFVIGLFLMFWSFHTTDTRYAGLAFWGGIGVGDGGMLFALIRARKEAERCGLL
Ga0307308_1062103723300028884SoilPAPAPLWQRRPLTLEERALELEQFEKAMRSQKRSLYLRFGFEYVVWFFVGLSLMYWSFRTTDSRYAGLFFFGGIGLGDAGMLLTLIRARKEAERCGLL
Ga0307468_10027772513300031740Hardwood Forest SoilPQTALSEQSKQGSVWQRPRPTPDERALELEEFEKSRRASTRYLYVRFGFEYFVWLIVGLFLMFWSLHTTDTRYADLAFWGGIGLGDGGMLMTLIRARHEAERCGLIS
Ga0307472_10083724423300032205Hardwood Forest SoilMKPFQPRHLTLDERALELEQFERARRVGMRYIYLRYGFEYVVWFIVGLYLLFWSFHTTDTRYAGLAFWGGIGLGDAGMLFALIRGRGEAERCGLI
Ga0370484_0000130_6778_70833300034125Untreated Peat SoilVSEPNVSIHSWNRRPLTLEERALEIEQSEKEFRRQTRSLYLRYGLEYAVWFSIGVFLLGWSMHTTDSRYAGLAFWGGLILGDGGMILTLVRARHEAEKRGL


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.