Metagenome / Metatranscriptome Family F098245

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098245
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	69 residues
Representative Sequence	MTRTFVVTCTVPVSDLDELELKHADHTIAVTGPNGYRHELELPEDADMERLEIELHKHFLEVRAPLRLT
Number of Associated Samples	84
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	70.19 %
% of genes near scaffold ends (potentially truncated)	26.92 %
% of genes from short scaffolds (< 2000 bps)	83.65 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.731 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (13.462 % of family members)
Environment Ontology (ENVO)	Unclassified (39.423 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.923 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 6.19% β-sheet: 36.08% Coil/Unstructured: 57.73%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
b.15.1.0: automated matches	d5zs3a_	5zs3	0.77258
b.15.1.0: automated matches	d3w1zd_	3w1z	0.73683
b.15.1.0: automated matches	d4feia_	4fei	0.73639
b.15.1.0: automated matches	d3glaa_	3gla	0.72966
b.15.1.1: HSP20	d5ds2a_	5ds2	0.7163

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00582	Usp	20.19
PF12679	ABC2_membrane_2	10.58
PF14759	Reductase_C	7.69
PF02566	OsmC	6.73
PF02775	TPP_enzyme_C	6.73
PF13185	GAF_2	2.88
PF07732	Cu-oxidase_3	1.92
PF01590	GAF	0.96
PF04413	Glycos_transf_N	0.96
PF13462	Thioredoxin_4	0.96
PF14691	Fer4_20	0.96
PF00171	Aldedh	0.96
PF00005	ABC_tran	0.96
PF01794	Ferric_reduct	0.96
PF00072	Response_reg	0.96
PF09364	XFP_N	0.96
PF02492	cobW	0.96
PF02687	FtsX	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	6.73
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	6.73
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	1.92
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.96
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.96
COG1519	3-deoxy-D-manno-octulosonic-acid transferase	Cell wall/membrane/envelope biogenesis [M]	0.96
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.73 %
Unclassified	root	N/A	43.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.73 %
Unclassified	root	N/A	43.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.73 %
Unclassified	root	N/A	43.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.27 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	24.04 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.96 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.27 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	21.15 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.96 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.27 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11.54 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4.81 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.27 %
Miltoncostaeales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales	4.81 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	4.81 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	2.88 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.96 %
Devosiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae	0.96 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.27 %
Miltoncostaeaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae	4.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.81 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2.88 %
Devosia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia	0.96 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.96 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.27 %
Miltoncostaea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea	4.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.81 %
Thermocrispum	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Thermocrispum	2.88 %
unclassified Devosia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → unclassified Devosia	0.96 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.96 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.27 %
Miltoncostaea oceani	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	4.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.81 %
Thermocrispum agreste	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Thermocrispum → Thermocrispum agreste	2.88 %
Devosia sp. 67-54	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → unclassified Devosia → Devosia sp. 67-54	0.96 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.96 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig1202299	Not Available	812	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0688969	Not Available	1133	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_11195536	Not Available	886	Open in IMG/M
3300000550\|F24TB_10182108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2044	Open in IMG/M
3300000890\|JGI11643J12802_10280072	Not Available	512	Open in IMG/M
3300000956\|JGI10216J12902_103155887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3113	Open in IMG/M
3300000956\|JGI10216J12902_107628503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1263	Open in IMG/M
3300000956\|JGI10216J12902_110887742	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300001431\|F14TB_102158192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	1256	Open in IMG/M
3300004156\|Ga0062589_100080947	All Organisms → cellular organisms → Bacteria	1981	Open in IMG/M
3300004157\|Ga0062590_101177707	Not Available	745	Open in IMG/M
3300004479\|Ga0062595_101078375	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300004479\|Ga0062595_101687742	Not Available	595	Open in IMG/M
3300004480\|Ga0062592_102070648	Not Available	564	Open in IMG/M
3300005093\|Ga0062594_100688660	Not Available	919	Open in IMG/M
3300005093\|Ga0062594_100698029	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300005093\|Ga0062594_101585904	Not Available	677	Open in IMG/M
3300005093\|Ga0062594_102602766	Not Available	558	Open in IMG/M
3300005146\|Ga0066817_1031660	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300005163\|Ga0066823_10157682	Not Available	506	Open in IMG/M
3300005164\|Ga0066815_10029005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	821	Open in IMG/M
3300005169\|Ga0066810_10074519	Not Available	709	Open in IMG/M
3300005329\|Ga0070683_100007378	All Organisms → cellular organisms → Bacteria	9290	Open in IMG/M
3300005332\|Ga0066388_101961641	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1048	Open in IMG/M
3300005441\|Ga0070700_101328411	Not Available	605	Open in IMG/M
3300005456\|Ga0070678_100171139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1769	Open in IMG/M
3300005456\|Ga0070678_102216510	Not Available	521	Open in IMG/M
3300005459\|Ga0068867_101413018	Not Available	646	Open in IMG/M
3300005535\|Ga0070684_100007825	All Organisms → cellular organisms → Bacteria	8335	Open in IMG/M
3300005577\|Ga0068857_102077013	Not Available	557	Open in IMG/M
3300005614\|Ga0068856_100309705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1597	Open in IMG/M
3300005713\|Ga0066905_100000665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10261	Open in IMG/M
3300005713\|Ga0066905_100110008	Not Available	1894	Open in IMG/M
3300005713\|Ga0066905_100167385	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1605	Open in IMG/M
3300005713\|Ga0066905_101352889	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300005713\|Ga0066905_101426756	Not Available	628	Open in IMG/M
3300005764\|Ga0066903_100246625	All Organisms → cellular organisms → Bacteria	2749	Open in IMG/M
3300005764\|Ga0066903_101403114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1312	Open in IMG/M
3300005983\|Ga0081540_1026964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3266	Open in IMG/M
3300006578\|Ga0074059_11340779	Not Available	581	Open in IMG/M
3300006580\|Ga0074049_12908132	Not Available	886	Open in IMG/M
3300006606\|Ga0074062_12834481	Not Available	1536	Open in IMG/M
3300006755\|Ga0079222_11652638	Not Available	611	Open in IMG/M
3300006852\|Ga0075433_10731065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	866	Open in IMG/M
3300006854\|Ga0075425_100956130	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300006881\|Ga0068865_101072245	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300006953\|Ga0074063_13519689	Not Available	640	Open in IMG/M
3300009094\|Ga0111539_11015817	Not Available	964	Open in IMG/M
3300009098\|Ga0105245_10608356	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300009792\|Ga0126374_10671873	All Organisms → cellular organisms → Bacteria → Terrabacteria group	775	Open in IMG/M
3300010036\|Ga0126305_10050596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2354	Open in IMG/M
3300010037\|Ga0126304_10203509	Not Available	1295	Open in IMG/M
3300010040\|Ga0126308_11109974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Thermocrispum → Thermocrispum agreste	557	Open in IMG/M
3300010043\|Ga0126380_10551262	Not Available	897	Open in IMG/M
3300010362\|Ga0126377_10097958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2669	Open in IMG/M
3300010999\|Ga0138505_100043381	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	639	Open in IMG/M
3300012511\|Ga0157332_1065084	Not Available	556	Open in IMG/M
3300012951\|Ga0164300_11209666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	501	Open in IMG/M
3300012955\|Ga0164298_10629772	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300012958\|Ga0164299_10401227	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300012960\|Ga0164301_11379980	Not Available	575	Open in IMG/M
3300012961\|Ga0164302_10781088	Not Available	718	Open in IMG/M
3300012985\|Ga0164308_10784113	Not Available	829	Open in IMG/M
3300013297\|Ga0157378_12738228	Not Available	546	Open in IMG/M
3300013308\|Ga0157375_11073291	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300015371\|Ga0132258_10072988	All Organisms → cellular organisms → Bacteria	7966	Open in IMG/M
3300015371\|Ga0132258_10089915	All Organisms → cellular organisms → Bacteria	7195	Open in IMG/M
3300015371\|Ga0132258_10891491	All Organisms → cellular organisms → Bacteria	2245	Open in IMG/M
3300015371\|Ga0132258_11158299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	1954	Open in IMG/M
3300015371\|Ga0132258_12856524	All Organisms → cellular organisms → Bacteria	1202	Open in IMG/M
3300015372\|Ga0132256_103720342	Not Available	513	Open in IMG/M
3300015374\|Ga0132255_100061036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4964	Open in IMG/M
3300015374\|Ga0132255_105443767	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300018031\|Ga0184634_10156318	All Organisms → cellular organisms → Bacteria → Acidobacteria	1025	Open in IMG/M
3300018031\|Ga0184634_10328628	Not Available	701	Open in IMG/M
3300018067\|Ga0184611_1005908	All Organisms → cellular organisms → Bacteria	3210	Open in IMG/M
3300018073\|Ga0184624_10018350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2574	Open in IMG/M
3300018073\|Ga0184624_10279752	Not Available	748	Open in IMG/M
3300018074\|Ga0184640_10463233	Not Available	562	Open in IMG/M
3300018081\|Ga0184625_10019798	All Organisms → cellular organisms → Bacteria	3204	Open in IMG/M
3300018081\|Ga0184625_10112621	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300018083\|Ga0184628_10612335	Not Available	550	Open in IMG/M
3300021445\|Ga0182009_10035190	All Organisms → cellular organisms → Bacteria	2033	Open in IMG/M
3300025908\|Ga0207643_10751231	Not Available	631	Open in IMG/M
3300025919\|Ga0207657_11511374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → unclassified Devosia → Devosia sp. 67-54	502	Open in IMG/M
3300025920\|Ga0207649_10109497	All Organisms → cellular organisms → Bacteria	1843	Open in IMG/M
3300025925\|Ga0207650_11470401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Thermocrispum → Thermocrispum agreste	579	Open in IMG/M
3300025932\|Ga0207690_11872058	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300025934\|Ga0207686_10410389	Not Available	1034	Open in IMG/M
3300025944\|Ga0207661_10513683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1095	Open in IMG/M
3300026078\|Ga0207702_10568477	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1110	Open in IMG/M
3300026089\|Ga0207648_10530553	Not Available	1079	Open in IMG/M
3300026095\|Ga0207676_10199511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	1767	Open in IMG/M
3300026116\|Ga0207674_11707406	Not Available	598	Open in IMG/M
3300027523\|Ga0208890_1055970	Not Available	631	Open in IMG/M
3300027821\|Ga0209811_10285418	Not Available	634	Open in IMG/M
3300028712\|Ga0307285_10142523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Thermocrispum → Thermocrispum agreste	653	Open in IMG/M
3300028713\|Ga0307303_10058586	Not Available	829	Open in IMG/M
3300028778\|Ga0307288_10286925	Not Available	652	Open in IMG/M
3300028802\|Ga0307503_10534466	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300028811\|Ga0307292_10218623	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300031170\|Ga0307498_10090547	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300031184\|Ga0307499_10070801	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300032013\|Ga0310906_10738405	Not Available	691	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.19%
Host-Associated	Host-Associated	29.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.54%
Plants	Host-Associated → Plants	29.81%
Aquatic	Environmental → Aquatic	8.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.58%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.54%
Sediment	Environmental → Aquatic → Sediment	8.65%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.12%
Loam	Environmental → Terrestrial → Soil → Loam	13.46%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.81%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.92%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.69%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.62%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	8.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.88%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005146	Soil and rhizosphere microbial communities from Laval, Canada - mgHAB	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300012511	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_03367630	2124908045	Soil	MTRTFVVTCSVPVSDLDELELTPVDHIVAVTGPEGFRHELELPAEADLNRLEVELHKHFLEIRAPLVT
ICChiseqgaiiDRAFT_06889693	3300000033	Soil	MTRTFVVTCSVPVSNLDELELTHVDHIIAVTGPEGFRHELELPTEADLDRLEVELHKHFLEIRAPLK*
ICChiseqgaiiFebDRAFT_111955363	3300000363	Soil	MTRTFVVTCSVPVSNLDELELTHVDHIIAVTGPEGFRHELELPTEADLDRLEVELHKHFLEVRAPLRSP*
F24TB_101821083	3300000550	Soil	MTRTFVVTCSVPVSDLDELELTHVDHIVAVTGPKGFRHELELPAEADLDRLEVELHKHFLEIRAPLVT*
JGI11643J12802_102800722	3300000890	Soil	MTRTFVVTCSVPVSNLDELELTHVDHIIAVTGPEGFRHELELPTEADLDRLEVELHKHFL
JGI10216J12902_1031558874	3300000956	Soil	MTRTLVVTCPVPVSDLEHLELTPRDHTIVITGPNGYRHNLELPVEADLDHLEVELYKHFLEIRAQLR*
JGI10216J12902_1076285032	3300000956	Soil	MSTIFVITCRVPCSHLDDLDVTHRDHTIDVEGRGFRRELALPEEADMEQLEVELHKHFLEVRAPLK*
JGI10216J12902_1108877422	3300000956	Soil	RRLASAAPSHMSRTFVVTCSVPVSDLDELELTWVDHTIAVTGPKGFRHEVELPGEADMERLEVELHKHFLEIRAPVK*
F14TB_1021581922	3300001431	Soil	MTRTFVVTCSVPVSDLDELELTHVDHIVAVTGPKGFHHXXELPAEADLDRLEVELHKHFLEIRAPLVT*
Ga0062589_1000809473	3300004156	Soil	MTRTIVVTCRVPVGELDELELEPIDHTLMICGPAGFRHELALPEDADMNSLEVELHKHFLEVRAPVSPSS*
Ga0062590_1011777071	3300004157	Soil	MTRTIVVTCRVPVGELDELELEPIDHTLMICGPAGFRHELALPEDADMSSLEVELHKHFLEVRAPVSPSS*
Ga0062595_1010783752	3300004479	Soil	MTTTIVVTCRVPVGELDELELKSVDHTLTILGPAGYRHELELPEEADMKRLEVELHKHYLEVRAPAVTPRRPS*
Ga0062595_1016877422	3300004479	Soil	MTTTIVVTCRVPVGELDELELKPVDHTLMILGPAGYRHELEFPEEADMKRLEVELHKHFLEVRAPVSTPS*
Ga0062592_1020706482	3300004480	Soil	MTRTFVVTCRVPSSHLDDLDVTPRDHKIDIEGPGFQHELALPEEADMEHIEVELHKHFLEIRAPLR*
Ga0062594_1006886601	3300005093	Soil	MRGPDGRGHARSMTRTFVITCKVPCSHLVDLDLKPHDHVIDVEGPGFRHELELPNEADMERLEVELHKHFLEIRAPVK*
Ga0062594_1006980291	3300005093	Soil	ALAASAMTTTIVVTCRVPVGELDELELKSVDHTLTILGPAGYRHELELPEEADMKRLEVELHKHYLEVRAPAVTPRRPS*
Ga0062594_1015859041	3300005093	Soil	MTHVLVMTCRVPVSEIEELEVRSVDHTLSIMGPAGYTHELELPAAADMERLEVELHKHFLEVRAPLRSS*
Ga0062594_1026027663	3300005093	Soil	MTHTLVVTCRVPVGELDELELTPVDHTLTIVGPAGYRHELDLPAEADMERLEVDLH
Ga0066817_10316602	3300005146	Soil	MTRTFVVTCSVPCTDLDELELTAIDHTIAVTGPNGFRHELELPGEADLEQMEVELHKHFLEIRAPVRAR*
Ga0066823_101576821	3300005163	Soil	MTRTFVVTCSVPVSDLGELELEHADHTIAVTGPNGYRHELKLPDDADMERLEIELHKHFLEVRAPLRLT*
Ga0066815_100290052	3300005164	Soil	MTRTFVVTCSVPVSDLDELELEHADHTIAVTGPNGYRHELELPDDADMERLEIELHKHFLEVRAPLRVR*
Ga0066810_100745192	3300005169	Soil	MTRTFVVTCRVPAFDLDELELTHVDHTIAVTGPNGYRHELELPEDADMDQLEVELHKHFLEVRAPFK*
Ga0070683_1000073784	3300005329	Corn Rhizosphere	MTRTFVVTCRVPSAHLDDLDVTHHDHTIDVEGPGFRHELALPDEADMDRLEIELHKHFLEFRAPYVATSRREKK*
Ga0066388_1019616412	3300005332	Tropical Forest Soil	MTRTFVVTCSVPSTDFAELDLKIVDHTVRVTGPDGFREDLVVPLDADLDRLEVELHKHFLEIRAPLR*
Ga0070700_1013284112	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MTHVLVMTCRVPVSELHEVELRSVDHTVSIVGPAGYTHELQLPVEADMDGLEVELHKHFLEVRAPLRSP*
Ga0070678_1001711391	3300005456	Miscanthus Rhizosphere	MTHVLVMTCRVPVSEIEELEVRSVDHTLSIMGPAGYTHELELPAAADMERLEVE
Ga0070678_1022165101	3300005456	Miscanthus Rhizosphere	MTESLVVTCRVPVGDLAELELTSADHTLSIVGPAGYRHELELPLEADMERLEVELHKHFL
Ga0068867_1014130182	3300005459	Miscanthus Rhizosphere	MTESLVVTCRVPVGDLAELELTSADHTLSIVGPAGYRHELELPLEADMERLEVELHKHFLEVRAPLRPT*
Ga0070684_10000782511	3300005535	Corn Rhizosphere	MTRTFVVTCRVPSAHLDDLDVTHHDHTIDVEGPGFRHELALPDEADMDRLEIELHKHFLEFRAPYVATSRLEKK*
Ga0068857_1020770132	3300005577	Corn Rhizosphere	MTRTIVVTCRVPVGELDELELEPIDHTLMICGPAGFRHELALPEDADMNSLEVELHKHF
Ga0068856_1003097053	3300005614	Corn Rhizosphere	MTRTFVITCKVPCSHLVDLDLKPHDHVIDVEGPGFRHELELPNEADMERLEVELHKHFLEIRAPVK*
Ga0066905_1000006657	3300005713	Tropical Forest Soil	MTRTYVVTCSVPSTDLDELNLRVIGHTIWVTGPGGFREELQVPDDADLDRLEVELHKHFLEFRAPLSAT*
Ga0066905_1001100083	3300005713	Tropical Forest Soil	MTRMFVVTCSVPSTDLDELNLKVVDHTIRVTGPDGFREELQVPEDADLDRLEVELHKHFLEFRAPLSST*
Ga0066905_1001673853	3300005713	Tropical Forest Soil	MTRTFVVTCSVPCSHLEDLDMITHEHTIDVEGPGFRHELALPDEADMERLEVELHKHFLEIRAPLRAT*
Ga0066905_1013528892	3300005713	Tropical Forest Soil	MRRVGPHGHARDVTRTFVITCSVPTTDLGELNLRVVDHTIRVTGPDGFREDLSVPEDADLDRLDVELYKHFLELRLPLK*
Ga0066905_1014267562	3300005713	Tropical Forest Soil	MTRTFVVTCSVPSTDFAELDLKIVDHTVRVTGPDGFREDLLVPEDADLDLLEVELHKHFLEIRAPLK*
Ga0066903_1002466254	3300005764	Tropical Forest Soil	MTRTFVITCRVPCSHLDDLDLKPHDHTVDVEGPGFRHELELPDEADMEHLEIELHKHFLEVRAPVK*
Ga0066903_1014031143	3300005764	Tropical Forest Soil	MTRTFVVTCSVPSTDFAELDLKIVDHTVRVTGPDGFREDLEVPQDADLDRLEVELHKHFLEIRAPLR*
Ga0081540_10269643	3300005983	Tabebuia Heterophylla Rhizosphere	MSAMTGNATRTFVVTSPVPVSDLAELELTTSDHTITVTGPNGFREELELPADADMDRLEVELHKHFLEIRAPIR*
Ga0074059_113407792	3300006578	Soil	MTRTFVVTCNVPVSDLDELELEHADHTIAVTGPNGYRHELKLPDDADMERLEIELHKHFLEVRAPLRVR*
Ga0074049_129081321	3300006580	Soil	MTRTFVVTCRVPAFDLDELELTHVDHTIAVTGPNGYRHELELPEDADMDQLEVELHKHFL
Ga0074062_128344812	3300006606	Soil	MTRTFVVTCSVPVSDLGELELEHADHTIAVTGPNGYRHELELPDDADMERLEIELHKHFLEVRAPLRVR*
Ga0079222_116526382	3300006755	Agricultural Soil	MTRTFVITCRVPCSHLDDLDVKPHDHTIDVEGPGFRHELALPDEADMEHLEVELHKHFLEVRAPLTVK*
Ga0075433_107310651	3300006852	Populus Rhizosphere	DMTRTFVITCRVPCSHLDDLDVKPHDHTIDVEGPGFRHELALPDEADMEHLEVELHKHFLEVRAPLTVK*
Ga0075425_1009561301	3300006854	Populus Rhizosphere	RLALAASAMTTTIVVTCRVPVGELDELELKSVDHTLTILGPAGYRHELELPEEADMERLEVELHKHFLEVRAPEVTPRRPS*
Ga0068865_1010722451	3300006881	Miscanthus Rhizosphere	PHRLALAASAMTTTIVVTCRVPVGELDELELKSVDHTLTILGPAGYRHELELPEEADMKRLEVELHKHYLEVRAPAVTPRRPS*
Ga0074063_135196891	3300006953	Soil	MTRTFVVTCNVPVSDLDELELEHADHTIAVTGPNGYRHELELPDDADMERLEIELHKHFLEVRAPLRLTYLR*
Ga0111539_110158172	3300009094	Populus Rhizosphere	MTDSLVVTCRVPVGDLAELELISADHTLSIVGPAGYRHELELPLEADMERLEVELHKHFLEVRAPLRPT*
Ga0105245_106083563	3300009098	Miscanthus Rhizosphere	ALAASAMTTTIVVTCRVPVGELDELELKSVDHTLTILGPAGYRHELELPEEADMKQLEVELHKHYLEVRAPAVTPRRPS*
Ga0126374_106718732	3300009792	Tropical Forest Soil	MTRTFVVTCSVPSTDFAELELEVVDHTVRVTGPDGFREDLEVPDDADLDRLEVELHKHFLEVRAPLR*
Ga0126305_100505964	3300010036	Serpentine Soil	MRSTLVVTCRLPVGDLEELELTSLDHTLSIVGPAGYRHELELPVEADMERLEVDLHKHFLEIRAPLRTP*
Ga0126304_102035094	3300010037	Serpentine Soil	MTESLVVTCRVPVGDMAELELVSADHTLSIVGPAGYRHELELPPEADMGQLEVELHKHFLEVRAPLRPA*
Ga0126308_111099742	3300010040	Serpentine Soil	AAAMTESLVVTCRVPVGDMAELELVSADHTLSIVGPAGYRHELELPPEADMGQLEVELHKHFLEVRAPLRPA*
Ga0126380_105512623	3300010043	Tropical Forest Soil	MTRMFVVTCSVPSTDLDELNLKVVDHTIRVTGPDGFREELQVPEDADLDRLEVELHKHFLEFRAPLSST
Ga0126377_100979583	3300010362	Tropical Forest Soil	MTRTFVVTCSVPSTDFAELELEVVDHTVRVTGPDGFREDLDVPDDADLDRLEVELHKHFLEVRAPLR*
Ga0138505_1000433812	3300010999	Soil	MTRTFVVTCRVPCSNLDDLVVTPRDHMIDVEGLGFRRELALPEEADMEQLEVELHKHFLEIRAPLK*
Ga0157332_10650843	3300012511	Soil	MTRTFVVTCRVPCSHLDDLDVKPHDHTIDVEGPGFRHELALPDEADMEHLEMELHRHFLEIR
Ga0164300_112096662	3300012951	Soil	MTHVLVMTCRVPVSEIEELEVRSVDHTLSILGPAGYTHELELPAAADMERLEVELHKHFLEVRAPLRSS*
Ga0164298_106297722	3300012955	Soil	MTRTFVVTCNVPVSDLGELELEHADHTIAVTGPNGYRHELELPDDADMERLEIELHKHFLEVRAPLRLT*
Ga0164299_104012272	3300012958	Soil	MTRTFVVTCSVPVSDLDELELKHADHTIAVTGPNGYRHELELPDNADMERLEIELHKHFLEVRAPLRLT*
Ga0164301_113799802	3300012960	Soil	VTDMTRTFVVTYSVPCTHLDDLDLRMHEHTIDVEGPGFRHELALPEDADMEHLEVELHKHFLEIRAPYVATSRRENE*
Ga0164302_107810882	3300012961	Soil	MTRTFVVTCSVPVSDLDELELKHADHTIAVTGPNGYRHELELPDNADMECLEIELHKHFLEVRAPLRLT*
Ga0164308_107841132	3300012985	Soil	MVSRAAAMTESLVVTCRVPVGDLAELELTSADHTLSIVGPEGYRHELELPPEADMGRLEVELHKHFLEVRAPVRPT*
Ga0157378_127382281	3300013297	Miscanthus Rhizosphere	MTESLVVTCRVPVGDLAELELTSADHTLSIVGPAGYRHELELPVQADMERLEVELHKHFLEVRAPLRPT*
Ga0157375_110732912	3300013308	Miscanthus Rhizosphere	MTTTIVVTCRVPVGELDELELKSVDHTLTILGPAGYRHELVLPEEADMKRLEVELHKHYLEVRAPAVTPRRPS*
Ga0132258_100729883	3300015371	Arabidopsis Rhizosphere	MTRTFVVTCTVPVSDLDELELKHADHTIAVTGPNGYRHELELPEDADMDRLEIELHKHFLEVRAPLRLT*
Ga0132258_100899158	3300015371	Arabidopsis Rhizosphere	MTRTFVVTCKVPSSHLDDLDVTPRDHTIDVEGPGFRHELALPEEADMEHLEVELHKHFLEIRAPLK*
Ga0132258_108914914	3300015371	Arabidopsis Rhizosphere	MTRTFVVTCRVPCSHLDDLDVKPHDHTIDVEGPGFRHELALPDEADMEHLEMELHRHFLEIRAPIK*
Ga0132258_111582992	3300015371	Arabidopsis Rhizosphere	MTRTFVVTCRVPCSHLDDLDVKHHEHTIDVEGPGFRHELALPDEADMERLEIELHKHFLEIRAPYVATSRREKK*
Ga0132258_128565242	3300015371	Arabidopsis Rhizosphere	MTRTFVVTCDVPVTDLQDLTLTPLDHTITVTGPNGFRHVLELPGEADLDRLEVELHKHFLEIRAPLAVT*
Ga0132256_1037203421	3300015372	Arabidopsis Rhizosphere	MTRTFVVTCRVPCSYLDDLDVKHHEHTIDVEGPGFRHELALPEDADMELLEVELHKHF
Ga0132255_1000610364	3300015374	Arabidopsis Rhizosphere	MTRTFVVTCRVPCSHLDDLDVKPHDHKIDVEGPGFRHELALPDEADMEHLEMELHRHFLEIRAPIK*
Ga0132255_1054437672	3300015374	Arabidopsis Rhizosphere	MTRTFVVTCRVPCSHLDDIDVMHHEHTIDVEGRGFRHELALPDEADMERLEIELHKHFLEIRAPLVVT*
Ga0184634_101563181	3300018031	Groundwater Sediment	RTFVVTCRVPVSDLDKLELTPMGHTITVTGPNGFREKLELSTDADMKRLEVELHKHFLEIRAPIR
Ga0184634_103286282	3300018031	Groundwater Sediment	MTTTFVVTCRVPCSHLDDLDVTHRDHTIDVEGLGFRHELALAEEADMEHLEVELHKHFLEIRAPLK
Ga0184611_10059084	3300018067	Groundwater Sediment	MTTTFVVTCRVPCSHLDDLDVTPHDHRIDVEGLGFRHELALPEEADMEHLEVELHKHFLEIRAPLK
Ga0184624_100183504	3300018073	Groundwater Sediment	MTTTFVVTCRVPCSHLDDLDVTHRDHTIDVEGLGFRHELSLPEEADMERLEVELHKHFLEIRAPLK
Ga0184624_102797522	3300018073	Groundwater Sediment	MGTDSTRTFVVTCRVPVSDLDKLELTPMGHTITVTGPNGFREKLELSTDADMKRLEVELHKHFLEIRAPIR
Ga0184640_104632331	3300018074	Groundwater Sediment	MTTTFVVTCRVPCSHLDDLDVTHRDHTIDVEGLGFRHELALPEEADMEHLEVELHKRFLEIRAPLK
Ga0184625_100197984	3300018081	Groundwater Sediment	MTTTFVVTCRVPCSHLDDLDVTPHDHRIDVEGLGFRHELSLPEEADMERLEVELHKHFLEIRAPLK
Ga0184625_101126212	3300018081	Groundwater Sediment	MTRTFVVTCTVPCTDLDELELTSDDHTIGVTGPDGYRHELELPREADLERMEVELHKHFLEIRAPLRAT
Ga0184628_106123352	3300018083	Groundwater Sediment	MTTTFVVTCRVPCSHLDDLDVTPHDHRIDVEGLGFRHELALPEEADMEHLEVELHKRFLEIRAPLK
Ga0182009_100351903	3300021445	Soil	MTRTIVVTCRVPVGELDELELEPIDHTLMICGPAGFRHELALPEDADMNSLEVELHKHFLEVRAPVSPSS
Ga0207643_107512311	3300025908	Miscanthus Rhizosphere	MTHVLVMTCRVPVSEIEELEVRSVDHTLSIMGPAGYTHELELPAAADMERLEVELHKHFLEV
Ga0207657_115113741	3300025919	Corn Rhizosphere	RVPVGELDELELTPVDHTLTIVGPAGYKHELDLPAEADMERLEADLHKHFLEVRAPLRFP
Ga0207649_101094973	3300025920	Corn Rhizosphere	MTRTFVVTCRVPSAHLDDLDVTHHDHTIDVEGPGFRHELALPDEADMDRLEIELHKHFLEFRAPYVATSRREKK
Ga0207650_114704011	3300025925	Switchgrass Rhizosphere	GTAMTHVLVMTGRVPVSEIEELEVRSVDHTLSIMGPAGYTHELELPAAADMERLEVELHKHFLEVRAPLRSS
Ga0207690_118720582	3300025932	Corn Rhizosphere	MTRTIVVTCRVPVGELDELELEPIDHTLMICGPAGFRHELALPEDADMSSLEVELHKHFLEVRAPVSPSS
Ga0207686_104103892	3300025934	Miscanthus Rhizosphere	MTESLVVTCRVPVGDLAELELTSADHTLSIVGPAGYRHELELPVQADMERLEVELHKHFLEVRAPLRPT
Ga0207661_105136831	3300025944	Corn Rhizosphere	MRGPDGRGHARSMTRTFVITCKVPCSHLVDLDLKPHDHVIDVEGPGFRHELELPNEADMERLE
Ga0207702_105684772	3300026078	Corn Rhizosphere	MRGPDGRGHARSMTRTFVITCKVPCSHLVDLDLKPHDHVIDVEGPGFRHELELPNEADMERLEVELHKHFLEIRAPVK
Ga0207648_105305533	3300026089	Miscanthus Rhizosphere	MTESLVVTCRVPVGDLAELELTSADHTLSIVGPAGYRHELELPLEADMERLEVELHKHFLEVRAPLRPT
Ga0207676_101995113	3300026095	Switchgrass Rhizosphere	MTRTFVITCKVPCSHLVDLDLKPHDHVIDVEGPGFRHELELPNEADMERLEVELHKHFLEIRAPVK
Ga0207674_117074062	3300026116	Corn Rhizosphere	MTRTIVVTCRVPVGELDELELEPIDHTLMICGPAGFRHELALPEDADMNSLEVELHKHFFEVR
Ga0208890_10559702	3300027523	Soil	MTRTFVVTCRVPAFDLDELELTHVDHTIAVTGPNGYRHELELPEDADMDQLEVELHKHFLEVRAPFK
Ga0209811_102854182	3300027821	Surface Soil	MTRTFVVTCSVPCTDLDELELTAIDHTIAVTGPNGFRHELELPGEADLEQMEVELHKHFLEIRAPVRAR
Ga0307285_101425231	3300028712	Soil	RAGRVRGARCFVARSTGTAMTHVLVMTCRVPVSEIEELEVRSVDHTLSIMGPAGYTHELELPAAADMERLEVELHKHFLEVRAPLRSS
Ga0307303_100585863	3300028713	Soil	MTHVLVMTCRVPVSEIEELEVRSVDHTLSIMGPAGYTHELELPAAADMERLEVELHKHFLEVRAPLRSS
Ga0307288_102869251	3300028778	Soil	VLVMTCRVPVSEIEELEVRSVDHTLSIMGPAGYTHELELPAAADMERLEVELHKHFLEVRAPLRSS
Ga0307503_105344662	3300028802	Soil	MTRTFVVTCSVPCTDLAELELMAIDHTIAVTGPDGFRHELELPAEADLEQMEVELHKHFLEIRAPVRAM
Ga0307292_102186233	3300028811	Soil	NSGMTRTFVVTCRVPSSDLDDLDVTPRDHTIDVVGPGFRRELALPEEADMEHLEVELHKHFLEIRAPLK
Ga0307498_100905472	3300031170	Soil	MTRTFVVTCSVPCTDLDELELTAVDHTIAVTGPNGFRHELELPGEADLERMEVELHKHFLEIRAPVRAM
Ga0307499_100708012	3300031184	Soil	MTRTFVVTCSVPCTDLDELELTAVDHTIAVTGPNGFRHELELPGEADLERMEVELHKHFLEIRAPLRAM
Ga0310906_107384052	3300032013	Soil	MTRTFVVTCTVPVSDLDELELKHADHTIAVTGPNGYRHELELPEDADMERLEIELHKHFLEVRAPLRLT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098245

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences