Metagenome / Metatranscriptome Family F098216

Basic Information
Family ID	F098216
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	71 residues
Representative Sequence	VPKLISAIILVAGIMLAINTTSETQDQVKFCDQYLLVAEHMNKNHRITEYMKSNGVQGVLETNHCKIKQGRT
Number of Associated Samples	83
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	77.88 %
% of genes near scaffold ends (potentially truncated)	27.88 %
% of genes from short scaffolds (< 2000 bps)	84.62 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (52.885 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (25.961 % of family members)
Environment Ontology (ENVO)	Unclassified (67.308 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (90.385 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102 1DelMOSum2010_100571155 2JGI20151J14362_100436343 3JGI24006J15134_100803522 4JGI24003J15210_100324514 5JGI24003J15210_100483743 6JGI24003J15210_101433771 7GOS2233_11084235 8NAP4_10332332 9Ga0075467_106074011 10Ga0075468_1000115029 11Ga0115566_101010422 12Ga0115552_12412552 13Ga0114995_101932322 14Ga0115551_11551793 15Ga0114994_109992842 16Ga0115547_12343262 17Ga0115546_10449362 18Ga0114932_108329952 19Ga0114933_101640006 20Ga0114933_102537183 21Ga0114933_106311392 22Ga0114933_108699221 23Ga0133547_106554226 24Ga0114934_101178745 25Ga0160422_104956123 26Ga0163110_108776162 27Ga0163109_1001226818 28Ga0163179_100555885 29Ga0163179_101561414 30Ga0180120_103952052 31Ga0181383_10222177 32Ga0181419_11703692 33Ga0181397_10462252 34Ga0181409_10411203 35Ga0181414_10252406 36Ga0181413_11203142 37Ga0181425_10346811 38Ga0181424_100436173 39Ga0181565_103065372 40Ga0181552_100648787 41Ga0181583_102587182 42Ga0181580_102833822 43Ga0181580_108547992 44Ga0181582_102798553 45Ga0181581_102366272 46Ga0181581_109514052 47Ga0181589_102027773 48Ga0181585_103421492 49Ga0181569_100365764 50Ga0181572_102576111 51Ga0181560_101130165 52Ga0181558_100522597 53Ga0181566_100962461 54Ga0181566_106647981 55Ga0193547_100289911 56Ga0193547_100374091 57Ga0193546_100360102 58Ga0193546_100630222 59Ga0181555_13058472 60Ga0181574_101323782 61Ga0211519_10039549 62Ga0211508_10369495 63Ga0211703_100403243 64Ga0211477_100116442 65Ga0211477_100626563 66Ga0211477_102882222 67Ga0211705_101709802 68Ga0211499_103177851 69Ga0211521_100805942 70Ga0211521_104599022 71Ga0211622_103159802 72Ga0211708_100651443 73Ga0211708_100746731 74Ga0211576_105077902 75Ga0211518_101337611 76Ga0211559_100123675 77Ga0211676_102075942 78Ga0211475_101250893 79Ga0211475_104813762 80Ga0211577_107476851 81Ga0211577_108970222 82Ga0211625_104879152 83Ga0211547_100371552 84Ga0213864_105367521 85Ga0224906_12007711 86Ga0255766_105263871 87Ga0209535_101431010 88Ga0209535_10237133 89Ga0209232_11673702 90Ga0209336_100441641 91Ga0209336_100486891 92Ga0209645_11619462 93Ga0209194_10276151 94Ga0209532_11760302 95Ga0209308_103812382 96Ga0209631_102691412 97Ga0209630_100463312 98Ga0209192_103276672 99Ga0257106_10520273 100Ga0257110_11139212 101Ga0307488_101902541 102Ga0307488_102001402 103Ga0315315_104683781 104Ga0315315_115133522
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102 1DelMOSum2010_100571155 2JGI20151J14362_100436343 3JGI24003J15210_100483743 4GOS2233_11084235 5Ga0114995_101932322 6Ga0114933_101640006 7Ga0181581_109514052 8Ga0211477_100626563 9Ga0211499_103177851 10Ga0211708_100746731 11Ga0211577_107476851 12Ga0224906_12007711
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102 1DelMOSum2010_100571155 2JGI20151J14362_100436343 3JGI24003J15210_100483743 4GOS2233_11084235 5Ga0114995_101932322 6Ga0114933_101640006 7Ga0181581_109514052 8Ga0211477_100626563 9Ga0211499_103177851 10Ga0211708_100746731 11Ga0211577_107476851 12Ga0224906_12007711
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 62.50% β-sheet: 0.00% Coil/Unstructured: 37.50%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF14743	DNA_ligase_OB_2	7.69
PF00924	MS_channel	2.88
PF07486	Hydrolase_2	1.92

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	2.88
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	2.88
COG3773	Cell wall hydrolase CwlJ, involved in spore germination	Cell cycle control, cell division, chromosome partitioning [D]	1.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	47.12 %
Unclassified	root	N/A	52.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	13.46 %
Unclassified	root	N/A	52.88 %
Viruses	superkingdom	All Organisms → Viruses	33.65 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.92 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	11.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.65 %
Unclassified	root	N/A	52.88 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.92 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.69 %
Unclassified	root	N/A	52.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.69 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.65 %
Unclassified	root	N/A	52.88 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	1.92 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.92 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.65 %
Rickettsiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	7.69 %
Unclassified	root	N/A	52.88 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.92 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	1.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.65 %
Unclassified	root	N/A	52.88 %
unclassified Rickettsiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales	7.69 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.92 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.65 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	0.96 %
Rickettsiales bacterium TMED174	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED174	6.73 %
Unclassified	root	N/A	52.88 %

Name	Rank	Taxonomy	Distribution
Cryomorphaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae	1.92 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.65 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	0.96 %
Rickettsiales bacterium TMED174	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED174	6.73 %
Unclassified	root	N/A	52.88 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.65 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	0.96 %
Rickettsiales bacterium TMED174	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED174	6.73 %
Unclassified	root	N/A	52.88 %
unclassified Cryomorphaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae → unclassified Cryomorphaceae	1.92 %

Name	Rank	Taxonomy	Distribution
Cryomorphaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae → unclassified Cryomorphaceae → Cryomorphaceae bacterium	1.92 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.65 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	0.96 %
Rickettsiales bacterium TMED174	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED174	6.73 %
Unclassified	root	N/A	52.88 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000101\|DelMOSum2010_c10057115	All Organisms → Viruses → Predicted Viral	1904	Open in IMG/M
3300001346\|JGI20151J14362_10043634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED174	2029	Open in IMG/M
3300001450\|JGI24006J15134_10080352	All Organisms → Viruses → Predicted Viral	1222	Open in IMG/M
3300001460\|JGI24003J15210_10032451	All Organisms → Viruses → Predicted Viral	1891	Open in IMG/M
3300001460\|JGI24003J15210_10048374	Not Available	1431	Open in IMG/M
3300001460\|JGI24003J15210_10143377	Not Available	621	Open in IMG/M
3300001969\|GOS2233_1108423	Not Available	1547	Open in IMG/M
3300003474\|NAP4_1033233	Not Available	982	Open in IMG/M
3300006803\|Ga0075467_10607401	Not Available	559	Open in IMG/M
3300007229\|Ga0075468_10001150	Not Available	11064	Open in IMG/M

Showing 1 to 10 of 104 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	5.77%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	20.19%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	5.77%
Oceanic	Environmental → Aquatic → Marine → Oceanic	21.15%
Pelagic	Environmental → Aquatic → Marine → Pelagic	6.73%
Strait	Environmental → Aquatic → Marine → Strait	8.65%
Unclassified	Environmental → Aquatic → Marine → Unclassified	25.96%
Volcanic	Environmental → Aquatic → Marine → Volcanic	5.77%

Habitat	Taxonomy	Distribution
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	2.88%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	18.27%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	25.96%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	18.27%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	8.65%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	6.73%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	5.77%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	5.77%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	5.77%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.92%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.92%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	5.77%
Estuarine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine	0.96%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.96%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	25.96%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	14.42%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.92%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	0.96%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	6.73%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	3.85%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	1.92%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	18.27%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	8.65%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	1.92%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	1.92%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	0.96%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.96%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	1.92%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300001346	Pelagic Microbial community sample from North Sea - COGITO 998_met_01	Environmental	Open in IMG/M
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental	Open in IMG/M
3300001969	Marine microbial communities from Yucatan Channel, Mexico - GS017	Environmental	Open in IMG/M
3300003474	Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 4	Environmental	Open in IMG/M
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental	Open in IMG/M
3300007229	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA	Environmental	Open in IMG/M
3300009071	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405	Environmental	Open in IMG/M
3300009077	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328	Environmental	Open in IMG/M

Showing 1 to 10 of 83 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_100571155	3300000101	Marine	VYKFSLYFVMVAGITLAITQTSETQDRVKFCEQYLLVAEHLNKTHRITSYMKSVGVEGVLETNHCQTKKGRI*
JGI20151J14362_100436343	3300001346	Pelagic Marine	MCQAVTLQRSRRRLVPKLISAIILVAGIMLAINTTSETQDQVEFCDQYLLVAEHLNKNHRITQYMKSNGVQGVLETNHCKIKQGRT*
JGI24006J15134_100803522	3300001450	Marine	LPKAISIIVLVAGITLAITQTSETQDRVKFCDQYLLVAEHINKTYKISNYMKSNGVEGVLETNHCQTKKGRI*
JGI24003J15210_100324514	3300001460	Marine	LPKAISIIVLVAGITLAINQTSETQDRVKFCDQYLLVAEHLNNTHRITSYMKINGVEGVLETNHCQTKKGRI*
JGI24003J15210_100483743	3300001460	Marine	MYRAVTLKKLRKRLVPKAISIMVLVAGITLAITQTSETQDRVKFCDQYLLVAEHLNKTHRITSYMKSNGVEGVLETNHCQTKKGRI*
JGI24003J15210_101433771	3300001460	Marine	GITLAITQTSETQDRVKFCEQYLLVAEHLNKTHRITSYMKSVGVEGVLETNHCQTKKGRI
GOS2233_11084235	3300001969	Marine	LRRRLVFKFCLSFVMVAGVMLAITTTGGSQDQVKFCDKYVLIAEQMNKTYSISQYMKDNGVEGVLETKHCRKGGQI*
NAP4_10332332	3300003474	Estuarine	MFQAVTLQKSRRQLVPKLIIGMLVAGVLLAINTTSETQDQVKFCDQYLLVAEHMNKTHSITDYMKSNGVGGVLETNHCKKKQGRI*
Ga0075467_106074011	3300006803	Aqueous	VYKFSLYFVMVAGITLAITQTSETQDRVKFCEQYLLVAEHLNKTHRITSYMKSVGVEGVLETNHCQTKK
Ga0075468_1000115029	3300007229	Aqueous	MVAGITLAITQTSETQDRVKFCEQYLLVAEHLNKTHRITSYMKSVGVEGVLETNHCQTKKGRI*
Ga0115566_101010422	3300009071	Pelagic Marine	VPKLISAIILVAGIMLAINTTSETQDQVEFCDQYLLVAEHLNKNHRITQYMKSNGVQGVLETNHCQTKKGRI*
Ga0115552_12412552	3300009077	Pelagic Marine	VPKLISAIILVAGIMLAINTTSETQDKIKFCDQYLLVAEHLNKNHRITQYMTSNGVQGVLETNHCKIKQGRT*
Ga0114995_101932322	3300009172	Marine	MPRLISTIVLVAGVLLAINTSSNTQDRVEFCDQYLLVAEHLNKTHTISNYMKSSGVEGVLETDHCKNKKGRKI*
Ga0115551_11551793	3300009193	Pelagic Marine	VPKLISAIILVAGIMLAINTTSETQDKIKFCDQYLLVAEHLNKNHRITQYMKSNGVQGVLETNHCKIKQGRT*
Ga0114994_109992842	3300009420	Marine	MPRLISTIVLVAGVLLAINTSSNTQDRVEFCDQYLLVAEHLNKTHTISNYMKSSGVEGVLETDHCQTKKGRI*
Ga0115547_12343262	3300009426	Pelagic Marine	VPKLISAIILVAGIMLAINTTSETQDQVEFCDQYLLVAEHLNKNHRITQYMKSNGVQGVLETNHCKIKQGRT*
Ga0115546_10449362	3300009435	Pelagic Marine	VPKAISIIVLVAGITLAITQTSETQDRVKFCDQYLLVAEHLNKNHRITQYMKSNGVQGVLETNHCQTKKGRI*
Ga0114932_108329952	3300009481	Deep Subsurface	VFKFSLSFVMVAGIMLAITTTGGSQDHVKFCDKYVLIAEQMNKTYSISEYMKQNGVEGILETNHCKNKQGRI*
Ga0114933_101640006	3300009703	Deep Subsurface	VPKLIIGMLVAGVLLAINTTSETQDQVKFCDQYLLVAEHMNKTYSISNYMKENGVGGVLETNHCKKKQGRI*
Ga0114933_102537183	3300009703	Deep Subsurface	VPKLIISITLVAGFLLAINTTSETQDQVKFCDKYVLIADQMNKTYSISNYMKENGVEGVLETNHCKNKQGRI*
Ga0114933_106311392	3300009703	Deep Subsurface	VFKFSLSFVMVAGIMLAITTTGGSQDQVKFCDKYVLIAEQMNKTYSISEYMKENGVEGVLETNHCKKEGQI*
Ga0114933_108699221	3300009703	Deep Subsurface	VFKFCLSFVMVAGIMLAITTTGGSQDHVKFCDKYVLIAEHMNKTYSISEYMKQNGVEGILETNHCKNKQGRI*
Ga0133547_106554226	3300010883	Marine	LPKAISIIVLVAGITLAITQTSETQDRVKFCDQYLLVAEHINKTYKISKYMKSNGVEGVLETNHCQTKKGRI*
Ga0114934_101178745	3300011013	Deep Subsurface	VPKLIIGMLVAGVLLAINTTSETQDQVKFCDQYLLVAEHMNKTYSISNYMKKNGVGGVLETNHCKKKQGRI*
Ga0160422_104956123	3300012919	Seawater	VFKFTLSFVMVAGIMLAITTTGGSQDQVKFCQKYVLIAEQMNKTYSISEYMKENGVEGVLETKHCRKGGQI*
Ga0163110_108776162	3300012928	Surface Seawater	VPKLISAVILVAGFLLAINTTSETQDQVKFCDKYVLIADQMNKTYSISNYMKENGVEGVLETNHCKNNGGRI*
Ga0163109_1001226818	3300012936	Surface Seawater	VPKLIIAFILVAIIFAINSTSETQDQVKFCDKYVLIADQMNKTYSISNYMKENGVEGVLETNHCKNKQGRI*
Ga0163179_100555885	3300012953	Seawater	VPKLIISITLVAGFLLAINTTSETQDQVKFCDKYVLIADQMNKTYSISEYMKENGVEGVLETNHCKNKQGRI*
Ga0163179_101561414	3300012953	Seawater	VPKLIIGMLVAGVLLAINTTSETQDQVKFCDQYLLVAEHMNKTYSISNYMKENGVGGVLETNHCKNKQGRI*
Ga0180120_103952052	3300017697	Freshwater To Marine Saline Gradient	LPKLISAIILVAGIMLAINTTSETQDQVEFCDQYLLVAEHLNKNHRITQYMKSNRVQGVLETNHCKIKQGRT
Ga0181383_10222177	3300017720	Seawater	VPKAISIMVLVAGITLAITQTSETQDRVKFCDQYLLVAEHLNKTHRITSYMKSNGVEGVLETNHCQTKKGRI
Ga0181419_11703692	3300017728	Seawater	VPKAISIMVLVAGITLAITQTSETQDRVKFCDQYLLVAEHLNNTHRITSYMKINGVEGVLETNHCQTKKGRI
Ga0181397_10462252	3300017744	Seawater	MYQAVTLKKLRKRLVPKAISIMVLVAGITLAITQTSETQDRVKFCDQYLLVAEHLNKTHRITSYMKSNGVEGVLETNHCQTKKGRI
Ga0181409_10411203	3300017758	Seawater	VPKAISIMVLVAGITLAITQTSETQDRVKFCEQYLLVAEHLNKTHRITSYMKSVGVEGVLETNHCQTKKGRI
Ga0181414_10252406	3300017759	Seawater	VPKAISIMVLVAGITLAITQTSETQDRVKFCDQYLLVAEHLNKTHRITSYMKSVGVEGVLETNHCQTKKGRI
Ga0181413_11203142	3300017765	Seawater	VPKAISIMVLVAGITLAITQTSETQDRVKFCDQYLLVAEHLNKTHRITSYMKINGVEGVLETNHCQTKKGRI
Ga0181425_10346811	3300017771	Seawater	VLVAGITLAITQTSETQDRVKFCDQYLLVAEHLNKTHRITSYMKSNGVEGVLETNHCQTKKGRI
Ga0181424_100436173	3300017786	Seawater	LPKAISIMVLVAGITLAITQTSETQDRVKFCDQYLLVAEHLNNTHRITSYMKINGVEGVLETNHCQTKKGRI
Ga0181565_103065372	3300017818	Salt Marsh	VPKLISAIILVAGIILAINTTSETQDQVEFCDQYLLVAEHLNKNHRITEYMKSNGVQGVLETNHCKIKQGRT
Ga0181552_100648787	3300017824	Salt Marsh	VPKLISAIILVAGIMLAINTTSETQDQVEFCDQYLLVAEHLNKNHRITEYMKSNGVQGVLETNHCKIKQGRT
Ga0181583_102587182	3300017952	Salt Marsh	MCQAVTLQKSRRRLVPKLISAIILVAGIMLAINTTSETQDQVEFCDQYLLVAEHLNKNHRITEYMKSNGVQGVLETNHCKIKQGRT
Ga0181580_102833822	3300017956	Salt Marsh	VPKLISAIILVAGLILAINTTSETQDQVEFCDQYLLVAEHLNKNHRITEYMKSNGVQGVLETNHCKIKQGRT
Ga0181580_108547992	3300017956	Salt Marsh	VPKLIIAFVLVAIIFAINSTSETQDQVKFCDKYVLIADQMNKTYSISDYMKENGVEGVLETNHCKNKQGRI
Ga0181582_102798553	3300017958	Salt Marsh	MYQAVTLQKSRRRLVPKLISAIILVAGIMLAINTTSETQDQVEFCDQYLLVAEHLNKNHRITEYMKSNGVQGVLETNHCKIKQGRT
Ga0181581_102366272	3300017962	Salt Marsh	VPKLISAIILVEGIMLAINTTSETQDQVEFCDQYLLVAEHLNKNHRITEYMKSNGVQGVLETNHCKIKQGRT
Ga0181581_109514052	3300017962	Salt Marsh	AGIMLAINTTSETQDQVEFCDQYLLVAEHMNKNHRITEYMKSNGVQGVLETNHCKIKQGR
Ga0181589_102027773	3300017964	Salt Marsh	VPKLISAIILVAGVMLAINTTSETQDQVEFCDQYLLVAEHMNKNHRITEYMKSNGVQGVLETNHCKIKQGRT
Ga0181585_103421492	3300017969	Salt Marsh	VPKLISAIILVAGIMLAINTTSETQDQVEFCDQYLLVAEHLNKNHRITEYMKSNGVQGVLETNHCKIKQGRI
Ga0181569_100365764	3300017986	Salt Marsh	MFQAVTLQKSRRRLVPKLISAIILVAGIMLAINTTSETQDQVEFCDQYLLVAEHLNKNHRITEYMKSNGVQGVLETNHCKIKQGRT
Ga0181572_102576111	3300018049	Salt Marsh	LLQELDGMFQAVTLQKSRRRLVPKLISAIILVAGIMLAINTTSETQDQVEFCDQYLLVAEHMNKNHRITEYMKSNGVQGVLETNHCKIKQGRT
Ga0181560_101130165	3300018413	Salt Marsh	VPKLISAIILVAGIMLAINTTSETQDQVKFCDQYLLVAEHMNKNHRITEYMKSNGVQGVLETNHCKIKQGRT
Ga0181558_100522597	3300018417	Salt Marsh	VPKLISAIILVAGIMLAINTTSETQDQVEFCDQYLLVAEHMNKNHRITEYMKSNGVQGVLETNHCKIKQGRT
Ga0181566_100962461	3300018426	Salt Marsh	RRRLVPKLISAIILVAGIMLAINTTSETQDQVEFCDQYLLVAEHLNKNHRITEYMKSNGVQGVLETNHCKIKQGRT
Ga0181566_106647981	3300018426	Salt Marsh	VPKLISAIILVAGVMLAINTTSETQDQVKFCDQYLLVAEHMNKNHRITEYMKSNGVQGVLETNHCKIKQGRT
Ga0193547_100289911	3300018895	Marine	VPKLIIGMLVAGVLLAINTTSETQDQVKFCDQYLLVAEHMNKTYSISNYMKENGVGGVLETNHCKNKQGRI
Ga0193547_100374091	3300018895	Marine	VPKLIISITLVAGFLLAINTTSETQDQVKFCDKYVLIADQMNKTYSISNYMTDNGVEGVLETNHCKNKQG
Ga0193546_100360102	3300019046	Marine	VPKLIIGMLVAGVLLAINTTSETQDQVKFCDQYLLVAEHMNKTYSISNYMKKNGVGGVLETNHCKKKQGRI
Ga0193546_100630222	3300019046	Marine	VPKLIISITLVAGFLLAINTTSETQDQVKFCDKYVLIADQMNKTYSISNYMKENGVEGVLETNHCKNKQG
Ga0181555_13058472	3300020051	Salt Marsh	AINTTSETQDQVEFCDQYLLVAEHLNKNHRITEYMKSNGVQGVLETNHCKIKQGRT
Ga0181574_101323782	3300020056	Salt Marsh	MCQAVTLQKSRRRLVPKLISAIILVAGIMLAINTTSETQDQVEFCDQYLLVAEHMNKNHRITEYMKSNGVQGVLETNHCKIKQGRT
Ga0211519_10039549	3300020266	Marine	MFQAVTLQKSRRQLVPKLIIGMLVAGVLLAINTTSETQDQVKFCDQYLLVAEHMNKTHSITDYMKSNGVGGVLETNHCKKKQGRI
Ga0211508_10369495	3300020337	Marine	VPKLIIGMLVAGVLLAINTTSETQDQVKFCDQYLLVAEHMNKTHSITDYMKSNGVGGVLETNHCKKKQGRI
Ga0211703_100403243	3300020367	Marine	VPKLIIAFILVAIIFAINSTSETQDQVKFCDKYVLIADQMNKTYSISNYMKENGVEGVLETNHCKNKQGRI
Ga0211477_100116442	3300020374	Marine	VPKLIISITLVAGFLLAINTTSETQDQVKFCDKYVLIADQMNKTYSISNYMTDNGVEGVLETNHCKNKQGRI
Ga0211477_100626563	3300020374	Marine	MVAGIMLAITTTGGSQDHVKFCDKYVLIAEHMNKTYSISEYMKQNGVEGILETNHCKNKQGRI
Ga0211477_102882222	3300020374	Marine	VAGIMLAITTTGGSQDHVKFCDKYVLIAEQMNKTYSISEYMKENGVEGVLETNHCKKEGQ
Ga0211705_101709802	3300020395	Marine	VFKFSLSFVIVAGIMLAITTTGGSQDQVKFCDKYVMIAEQMNKTYSISEYMKENGVEGVLETKHCRKGGQI
Ga0211499_103177851	3300020402	Marine	VPKLIIAFILVAIIFAINSTSETQDQVKFCDKYVLIADQMNKTYSISNYMKENGVEGVLETNHC
Ga0211521_100805942	3300020428	Marine	MVAGIMLAITTTGGSQDHVKFCDKYVLIAEQMNKTYSISEYMKENGVEGVLETNHCKKEGQI
Ga0211521_104599022	3300020428	Marine	GIMLAITTTGGSQDHVKFCDKYVLIAEHMNKTYSISEYMKQNGVEGILETNHCKNKQGRI
Ga0211622_103159802	3300020430	Marine	VFKFTLSFVMVAGIMLAITTTGGSQDQVKFCEKYVLIAEQMNKTYSISEYMKENGVEGVLETKHCRKGGQI
Ga0211708_100651443	3300020436	Marine	MLAITTTGGSQDQVKFCDKYVMIAEQMNKTYSISEYMKENGVEGVLETKHCRKGGQI
Ga0211708_100746731	3300020436	Marine	LMAGFLLAINTTSETQDQVKFCEKYVLIADQMNKTYSISNYMKENGVEGVLETNHCKNKRGRI
Ga0211576_105077902	3300020438	Marine	VYKFSLYFVMVAGITLAITQTSETQDRVKFCEQYLLVAEHLNKTHRITSYMKSVGVEGVLETNHCQTKKGRI
Ga0211518_101337611	3300020440	Marine	IGMLVAGVLLAINTTSETQDQVKFCDQYLLVAEHMNKTYSISNYMKENGVGGVLETNHCKNKQGRI
Ga0211559_100123675	3300020442	Marine	VPKLISAVILVAGFLLAINTTSETQDQVKFCDKYVLIADQMNKTYSISNYMKENGVEGVLETNHCKNNGGRI
Ga0211676_102075942	3300020463	Marine	VPKLIISITLVAGFLLAINTTSETQDQVKFCDKYVLIADQMNKTYSISDYMKKNGVEGVLETNHCKNKQGRI
Ga0211475_101250893	3300020468	Marine	VFKFCLSFVMVAGIMLAITTTGGSQDHVKFCDKYVLIAEHMNKTYSISEYMKQNGVEGILETNHCKNKQGRI
Ga0211475_104813762	3300020468	Marine	VPKLIISITLVAGFLLAINTTSETQDQVKFCDKYVLIADQMNKTYSISNYMKENGVEGVLETNHCKNKQGRI
Ga0211577_107476851	3300020469	Marine	ETQDRVKFCEQYLLVAEHLNKTHRITSYMKSVGVEGVLETNHCQTKKGRI
Ga0211577_108970222	3300020469	Marine	VPKAISIMVLVAGITLAITQTSETQDRVKFCDQYLLVAEHLNKTHRITSYMKSNGVEGVLETN
Ga0211625_104879152	3300020473	Marine	VFKFSLSFVIVAGIMLAITTTGGSQDQVKFCDKYILIAEQMNKTYSISEYMKENGVEGVLETKHCRKGGQI
Ga0211547_100371552	3300020474	Marine	VPKLIISITLVAGFLLAINTTSETQDQVKFCDKYVLIADQMNKTYSISEYMKENGVEGVLETNHCKNKQGRI
Ga0213864_105367521	3300021379	Seawater	IILVAGIMLAINTTSETQDQVEFCDQYLLVAEHLNKNHRITEYMKSNGVQGVLETNHCKIKQGRT
Ga0224906_12007711	3300022074	Seawater	VPKAISIMVLVAGITLAITQTSETQDRVKFCDQYLLVAEHLNKTHRITSYMKSNGVEGVLET
Ga0255766_105263871	3300023172	Salt Marsh	RSNIFWLELLQELDGMCQAVTLQKSRRRLVPKLISAIILVAGIMLAINTTSETQDQVEFCDQYLLVAEHLNKNHRITEYMKSNGVQGVLETNHCKIKQGRT
Ga0209535_101431010	3300025120	Marine	LPKAISIIVLVAGITLAINQTSETQDRVKFCDQYLLVAEHLNNTHRITSYMKINGVEGVLETNHCQTKKGRI
Ga0209535_10237133	3300025120	Marine	MYRAVTLKKLRKRLVPKAISIMVLVAGITLAITQTSETQDRVKFCDQYLLVAEHLNKTHRITSYMKSNGVEGVLETNHCQTKKGRI
Ga0209232_11673702	3300025132	Marine	VPKLIIGMLVAGVLLAINTTSETQDQVKFCDQYLLVAEHMNKTHSITDYMKSNGVEGVLETNHCKNKQGRI
Ga0209336_100441641	3300025137	Marine	VYKFSLYFVMVAGITLAITQTSETQDRVKFCDQYLLVAEHLNKTHTISNYMKSSGVEGVLETDHCQTKK
Ga0209336_100486891	3300025137	Marine	LPKAISIIVLVAGITLAITQTSETQDRVKFCDQYLLVAEHINKTYKISNYMKSNGVEGVLETNHCQTKKGRI
Ga0209645_11619462	3300025151	Marine	VPKLIISIILVAGFLLAINTTSETQDQVKFCDQYLLVAEHMNKTHSITDYMKSNGVEGVLETNHCKNKQGRI
Ga0209194_10276151	3300025632	Pelagic Marine	VPKLISAIILVAGIMLAINTTSETQDQVEFCDQYLLVAEHLNKNHRITQYMTSNGVQGVLETNHCKIKQGRT
Ga0209532_11760302	3300025696	Pelagic Marine	VPKLISAIILVAGIMLAINTTSETQDKIKFCDQYLLVAEHLNKNHRITQYMTSNGVQGVLETNHCKIKQGRT
Ga0209308_103812382	3300025869	Pelagic Marine	DGMCQAVTLQKSRRRQVPKLISAIILVAGIMLAINTTSETQDQVEFCDQYLLVAEHLNKNHRITQYMKSNGVQGVLETNHCQTKKGRI
Ga0209631_102691412	3300025890	Pelagic Marine	CQAVTLQKSRRRQVPKLISAIILVAGIMLAINTTSETQDKIKFCDQYLLVAEHLNKNHRITQYMTSNGVQGVLETNHCKIKQGRT
Ga0209630_100463312	3300025892	Pelagic Marine	VPKLISAIILVAGIMLAINTTSETQDQVEFCDQYLLVAEHLNKNHRITQYMKSNGVQGVLETNHCKIKQGRT
Ga0209192_103276672	3300027752	Marine	MPRLISTIVLVAGVLLAINTSSNTQDRVEFCDQYLLVAEHLNKTHTISNYMKSSGVEGVLETDHCKNKKGRKI
Ga0257106_10520273	3300028194	Marine	VYKFSLYFVMVAGITLAITQTSETQDRVKFCDQYLLVAEHLNKTHTISNYMKTSGVEGVLETNHCQTKKGRI
Ga0257110_11139212	3300028197	Marine	MVAGITLAITQTSETQDRVKFCEQYLLVAEHLNKTHRITSYMKSVGVEGVLETNHCQTKKGRI
Ga0307488_101902541	3300031519	Sackhole Brine	VAGITLAITQTSETQDRVKFCEQYLLVAEHLNKTHRITSYMKSVGVEGVLETNHCQTKKGRI
Ga0307488_102001402	3300031519	Sackhole Brine	LPKAISIIVLVAGITLAITQTSETQDRVKFCEQYLLVAEHLNNTHRITSYMKINGVEGVLETNHCQTKKGRI
Ga0315315_104683781	3300032073	Seawater	VPKAISIMVLVAGITLAITQTSETQDRVKFCDQYLLVAEHLNKTHTISNYMKSSGVEGVL
Ga0315315_115133522	3300032073	Seawater	TLAITETSETQDRVKFCDQYLLVAEHLNKTHTISNYMKSSGVEGVLETDHCQTKKGRI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098216

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences