Metagenome / Metatranscriptome Family F098134

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098134
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	81 residues
Representative Sequence	VVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILVDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSSTIG
Number of Associated Samples	89
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	60.58 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	93.27 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.000 % of family members)
Environment Ontology (ENVO)	Unclassified (42.308 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.385 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.19% β-sheet: 0.00% Coil/Unstructured: 69.81%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.22
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.22
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01471	PG_binding_1	12.50
PF03364	Polyketide_cyc	5.77
PF00072	Response_reg	1.92
PF10604	Polyketide_cyc2	1.92
PF07690	MFS_1	0.96
PF03352	Adenine_glyco	0.96
PF03992	ABM	0.96
PF13185	GAF_2	0.96
PF04539	Sigma70_r3	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.96
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.96
COG2818	3-methyladenine DNA glycosylase Tag	Replication, recombination and repair [L]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	95.19 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	95.19 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	95.19 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	95.19 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2065487018\|GPINP_F5MS3JC02I5K5L	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	508	Open in IMG/M
3300005175\|Ga0066673_10105255	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1520	Open in IMG/M
3300005184\|Ga0066671_10303193	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1002	Open in IMG/M
3300005347\|Ga0070668_100158433	All Organisms → cellular organisms → Bacteria	1835	Open in IMG/M
3300005355\|Ga0070671_101817709	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	541	Open in IMG/M
3300005435\|Ga0070714_100182458	All Organisms → cellular organisms → Bacteria	1910	Open in IMG/M
3300005436\|Ga0070713_101000748	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	806	Open in IMG/M
3300005436\|Ga0070713_101032486	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	793	Open in IMG/M
3300005518\|Ga0070699_101195286	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	698	Open in IMG/M
3300005569\|Ga0066705_10275852	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1066	Open in IMG/M
3300005569\|Ga0066705_10794673	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	564	Open in IMG/M
3300005575\|Ga0066702_10426511	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	811	Open in IMG/M
3300006032\|Ga0066696_10970783	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	540	Open in IMG/M
3300006163\|Ga0070715_10274190	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	891	Open in IMG/M
3300006800\|Ga0066660_11358542	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	556	Open in IMG/M
3300006800\|Ga0066660_11449712	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	539	Open in IMG/M
3300007258\|Ga0099793_10023971	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2534	Open in IMG/M
3300009092\|Ga0105250_10463278	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	570	Open in IMG/M
3300009143\|Ga0099792_10691251	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	659	Open in IMG/M
3300010321\|Ga0134067_10322571	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	601	Open in IMG/M
3300010335\|Ga0134063_10506965	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	604	Open in IMG/M
3300010335\|Ga0134063_10643095	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	543	Open in IMG/M
3300010371\|Ga0134125_12385683	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	575	Open in IMG/M
3300010373\|Ga0134128_11274419	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	810	Open in IMG/M
3300012198\|Ga0137364_10083181	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2218	Open in IMG/M
3300012198\|Ga0137364_10607025	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	825	Open in IMG/M
3300012198\|Ga0137364_10713442	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	757	Open in IMG/M
3300012199\|Ga0137383_10291398	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1195	Open in IMG/M
3300012205\|Ga0137362_10123043	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2201	Open in IMG/M
3300012205\|Ga0137362_10539666	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1008	Open in IMG/M
3300012210\|Ga0137378_10153711	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2133	Open in IMG/M
3300012210\|Ga0137378_10368849	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1333	Open in IMG/M
3300012285\|Ga0137370_10734473	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	613	Open in IMG/M
3300012357\|Ga0137384_10392481	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1147	Open in IMG/M
3300012357\|Ga0137384_10401600	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1132	Open in IMG/M
3300012359\|Ga0137385_11271506	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	598	Open in IMG/M
3300012362\|Ga0137361_10310514	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1444	Open in IMG/M
3300012582\|Ga0137358_11054965	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	522	Open in IMG/M
3300012683\|Ga0137398_10448980	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	882	Open in IMG/M
3300012685\|Ga0137397_10138135	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1801	Open in IMG/M
3300012685\|Ga0137397_10843562	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	680	Open in IMG/M
3300012882\|Ga0157304_1078127	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	564	Open in IMG/M
3300012885\|Ga0157287_1119527	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	511	Open in IMG/M
3300012897\|Ga0157285_10332295	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	527	Open in IMG/M
3300012917\|Ga0137395_10110895	All Organisms → cellular organisms → Bacteria	1835	Open in IMG/M
3300012922\|Ga0137394_11203458	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	621	Open in IMG/M
3300012925\|Ga0137419_10105795	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1956	Open in IMG/M
3300012929\|Ga0137404_10044929	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3354	Open in IMG/M
3300012930\|Ga0137407_12365983	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	508	Open in IMG/M
3300012958\|Ga0164299_11128844	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	588	Open in IMG/M
3300012960\|Ga0164301_10832092	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	709	Open in IMG/M
3300012984\|Ga0164309_10353491	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1080	Open in IMG/M
3300013307\|Ga0157372_10738905	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1144	Open in IMG/M
3300015201\|Ga0173478_10796072	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	518	Open in IMG/M
3300015264\|Ga0137403_10046053	All Organisms → cellular organisms → Bacteria	4520	Open in IMG/M
3300015374\|Ga0132255_101037197	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1231	Open in IMG/M
3300018000\|Ga0184604_10265674	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	602	Open in IMG/M
3300019362\|Ga0173479_10042838	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1443	Open in IMG/M
3300019881\|Ga0193707_1116261	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	784	Open in IMG/M
3300019996\|Ga0193693_1023024	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1143	Open in IMG/M
3300020002\|Ga0193730_1155376	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	601	Open in IMG/M
3300021080\|Ga0210382_10164067	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	956	Open in IMG/M
3300021344\|Ga0193719_10342710	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	622	Open in IMG/M
3300021363\|Ga0193699_10178496	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	879	Open in IMG/M
3300021411\|Ga0193709_1032608	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1250	Open in IMG/M
3300021411\|Ga0193709_1129126	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	508	Open in IMG/M
3300021413\|Ga0193750_1038355	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1055	Open in IMG/M
3300021418\|Ga0193695_1022107	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1341	Open in IMG/M
3300021418\|Ga0193695_1103237	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	609	Open in IMG/M
3300022534\|Ga0224452_1246587	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	546	Open in IMG/M
3300022694\|Ga0222623_10298708	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	618	Open in IMG/M
3300025899\|Ga0207642_10859831	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	579	Open in IMG/M
3300025915\|Ga0207693_11457385	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	506	Open in IMG/M
3300025919\|Ga0207657_11423215	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	520	Open in IMG/M
3300025927\|Ga0207687_10685410	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	869	Open in IMG/M
3300025939\|Ga0207665_11047904	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	649	Open in IMG/M
3300026316\|Ga0209155_1212972	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	604	Open in IMG/M
3300026317\|Ga0209154_1248365	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	620	Open in IMG/M
3300026329\|Ga0209375_1326342	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502	Open in IMG/M
3300026331\|Ga0209267_1322926	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	511	Open in IMG/M
3300026355\|Ga0257149_1052993	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	587	Open in IMG/M
3300026361\|Ga0257176_1045033	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	689	Open in IMG/M
3300026542\|Ga0209805_1298952	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	611	Open in IMG/M
3300026550\|Ga0209474_10643346	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	545	Open in IMG/M
3300026552\|Ga0209577_10328267	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1133	Open in IMG/M
3300026552\|Ga0209577_10567259	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	709	Open in IMG/M
3300026552\|Ga0209577_10718591	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300027512\|Ga0209179_1136991	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	547	Open in IMG/M
3300027748\|Ga0209689_1138759	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1195	Open in IMG/M
3300028379\|Ga0268266_10567668	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1088	Open in IMG/M
3300028711\|Ga0307293_10310768	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
3300028784\|Ga0307282_10655964	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	509	Open in IMG/M
3300028807\|Ga0307305_10401203	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	620	Open in IMG/M
3300028828\|Ga0307312_11032753	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	544	Open in IMG/M
3300031015\|Ga0138298_1567182	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	536	Open in IMG/M
3300031057\|Ga0170834_109940870	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	653	Open in IMG/M
3300031152\|Ga0307501_10264832	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	517	Open in IMG/M
3300031446\|Ga0170820_16878309	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3251	Open in IMG/M
3300031469\|Ga0170819_14268301	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	537	Open in IMG/M
3300031469\|Ga0170819_14808592	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300031474\|Ga0170818_107711006	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	851	Open in IMG/M
3300032013\|Ga0310906_11462205	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300032174\|Ga0307470_11747700	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	525	Open in IMG/M
3300032205\|Ga0307472_100165631	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1636	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.35%
Host-Associated	Host-Associated	8.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.50%
Plants	Host-Associated → Plants	8.65%
Aquatic	Environmental → Aquatic	3.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.73%
Sediment	Environmental → Aquatic → Sediment	2.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.92%
Freshwater	Environmental → Aquatic → Freshwater	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.85%
Loam	Environmental → Terrestrial → Soil → Loam	8.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	51.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.35%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.88%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	25.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.92%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2065487018	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012885	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019996	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031015	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPINP_03312730	2065487018	Soil	VVDTVEVPAELGQLEAASVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGTGT
Ga0066673_101052551	3300005175	Soil	VVVVLAVVDTAEVAAEPGQLEAVSMVVSAAEQDSILGEQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSSTIGSL
Ga0066671_103031933	3300005184	Soil	VVVVLAVVDTVEVAAELGQLEAAVAVVVSTAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSS
Ga0070668_1001584333	3300005347	Switchgrass Rhizosphere	VVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVLSMEEWAVSSNVTMQIGTATGTGTMATSSTIGSLSLT
Ga0070671_1018177091	3300005355	Switchgrass Rhizosphere	VVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVLSMEEWAVSSNVTMQIGTATGTGTMATSSTIGSLSLT
Ga0070714_1001824581	3300005435	Agricultural Soil	VVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSSTIGSLS
Ga0070713_1010007482	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VVVLVAAGVDTLEAEVVVQGLAVATSAVEQDSVVVRSMEEWAISSNVTMQIGIATGTGGMSISSAIGSLFLT
Ga0070713_1010324861	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VVVLAVVDTVEAAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSS
Ga0070699_1011952861	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVLSMEEWAVSSNVTMQIGTATGTGTMATSS
Ga0066705_102758521	3300005569	Soil	VVVVLAVVDTAEVAAEPGQLEAVSMVVSAAEQDSILGEQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSSTIGSLS
Ga0066705_107946731	3300005569	Soil	VVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILVDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSS
Ga0066702_104265112	3300005575	Soil	VVVVLVVAVAGTPEAEVEVQGLAVATAAVEQDSVVVRSMEEWDISSNVTMQIGIATGTVGMSISFAIGSLFLTTASGLGLILG
Ga0066696_109707832	3300006032	Soil	VVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILVDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSST
Ga0070715_102741901	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VVVLAVVDTVEAAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSST
Ga0066660_113585422	3300006800	Soil	VVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGT
Ga0066660_114497122	3300006800	Soil	VVVVLAVVDTPEAEVEVQGLAVATSAVEEDSVLVDQDSVVVRSVEEWAVSSNVTMQIGTATGTG
Ga0099793_100239714	3300007258	Vadose Zone Soil	VEEASVVVVLAVVDTAEVAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTVTGTGTMVTSSTIGSLSLT
Ga0105250_104632781	3300009092	Switchgrass Rhizosphere	VEEASVVVVLAVVDTAEVAAELGQLEAVSMVVSAAEQESVLVHQDSVVVLAMEEWAVAANVTLQIGTATGI
Ga0099792_106912511	3300009143	Vadose Zone Soil	VEEASVVVVLAVVDTVEVAAELGQLAAASVAVVVSAAEQDSILGDQDSVVAPSMEEWAVSSNVTMQIGTATGTGTMATS
Ga0134067_103225712	3300010321	Grasslands Soil	VDTPEAEVEVQGPAVATSAVEQDSVLVDQDSVVVRSMEEWAVSSNVTMQIGTATGTGTMATSSTSVLCL*
Ga0134063_105069652	3300010335	Grasslands Soil	VEEASVVVVLAVVDTAEVAAELGQLEAASVAVVVSAAEQDSILGDRDSVVVHSMEEWAVSSNVTMQIGTATGTGTMA
Ga0134063_106430951	3300010335	Grasslands Soil	VEEDSVVVVLVVAVAGTLEAEVEVRGLAVATSAVEQDSVLVDQDSVVAHSMEEWAVSSNVTMQIGTATGTGTMA
Ga0134125_123856832	3300010371	Terrestrial Soil	VEEASVGGALAVVDTAEVAAELVQLAASVVVVVSAPEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMAT
Ga0134128_112744191	3300010373	Terrestrial Soil	VEEDSVVVVVLVVVAGTPEVKVRGLAVATSAVEQDSVVVRSMEEWAISSNVTMQIGIATGTGGMSISSAIGSLFLTTASGLGLILGIITTRTTTRIITDTM
Ga0137364_100831811	3300012198	Vadose Zone Soil	VEEDSVVVVLAVVDTPEAEVEVQGLAVATSAVEEDSVLVDQDSVVVRSVEEWAVSSNVTMQIGTATGTGGMPTSSAIGSLFLTTVSGSGWM
Ga0137364_106070252	3300012198	Vadose Zone Soil	VEEASVVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILVDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSSTIGSLSL
Ga0137364_107134421	3300012198	Vadose Zone Soil	VEEGSVVVVLTVADTPEAGVEVQGLAAVTSAVEQDSVLVDQDSVVVRSMEEWAVSSNVTMQIGTATGTGGMPTSSAIGSLFLTTVSG
Ga0137383_102913983	3300012199	Vadose Zone Soil	VAVEEGSVVVVLAVVDTPEAEVGVQGLAVATSAVEQDSVLVDQDSVVVRSMEEWAVSSNVTMQIGTATGTGGMPTSSAIGSLFLTTVSGSD
Ga0137362_101230431	3300012205	Vadose Zone Soil	VEEGSVVVVLVVAAVDTPEAEVEVQGPPVATSPVEQDSVLVDPDSVVVRSMEEWAVSSNITMEIGTVIGTGTMAISSTIGSLSLTTVSGLDWIPGIILTTITMRTT
Ga0137362_105396662	3300012205	Vadose Zone Soil	VEEDSVVVVLVVAVAGTPEAEVEVQGLAVATSAVDQDSVVVRSMEEWAVSSNVTMQIGTATGTGGMAISSA
Ga0137378_101537111	3300012210	Vadose Zone Soil	VEEGSVVVVLAVVDTPEAEVEVQGLAVATSAVEEDSVLVDQDSVVVRSVEEWAVSSNVTMQIGTATGTGGMPTSSAIGSLFLTTVSGSD
Ga0137378_103688491	3300012210	Vadose Zone Soil	VVVVLAVVDTVEVAAELGQLEAAFVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTTTGTGGMAIS
Ga0137370_107344731	3300012285	Vadose Zone Soil	VEEDSVVVVLVVAVAGTPGAEVEVQGLAVATSAVDQDSVVVRSMEEWAISSNVTMQIGIATGTDGMSISSAIGSLFLTTASGLGLILGIITIRTTTRIITD
Ga0137384_103924811	3300012357	Vadose Zone Soil	VAVEEGSVVVVLAVVDTPEAEVGVQGLAVATSAVEQDSVLVDQDSVVVRSMEEWAVSSNVTMQIGTTTGTGGMAISSAIGSLSLTTVSG
Ga0137384_104016001	3300012357	Vadose Zone Soil	VEEGSVVVVLAVVDTLEAVVDVQGLAVVTSAVEQDSVLVDQDSVVIGSMEEWAVSSNVTMQIGTTTGTGGMAISSAIGSLSLTTVSG
Ga0137385_112715061	3300012359	Vadose Zone Soil	VEEGSVVVVLAVVDTPEAEVEVQGAPVATSPVEQDSVLVDQDSVVIRSMEEWAVSSNVTMQIGTTTGTGGMAISSAIGSL
Ga0137361_103105142	3300012362	Vadose Zone Soil	VVVVLAVVDTAEAAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGTETMT
Ga0137358_110549651	3300012582	Vadose Zone Soil	VEEDSVVVVLAVADTPEAEVEVQGLAVVTSAVEQDSVLVDQDSAVVRSMEEWAVSSNVTMQIGTATGTGGMPTSSAIGSLFLTTVSGS
Ga0137398_104489801	3300012683	Vadose Zone Soil	VEEGSVVVVLVVAAVDTPEAEVEVQGPPVATSPVEQDSVLVDPDSVVVRSMEEWAVSSNITMEIGTVIGTGTMAISSTIGSLSLTTVSGLDWIPGIILTTITMRT
Ga0137397_101381351	3300012685	Vadose Zone Soil	VEEDSVVVVLVGAVAGTAEAEVEVQGLAVATSAVEQEDSVVVRSMEEWAISSNVTMQIGIATGTGGMSISSAIGSLFLTTA
Ga0137397_108435621	3300012685	Vadose Zone Soil	VEEASVVVVLAVVDTAEVAAELGQLEAVSMVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGIGTMVTSSTIGSLSLTT
Ga0157304_10781271	3300012882	Soil	VEEDSVVVVLVVVAGTPEAELEVQGLAVATSAVEHDSVVVRSVEEWAISSNVTMQIGIAAGTGGMS
Ga0157287_11195271	3300012885	Soil	VEEASAVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTKATSSTIGSLSLTTV
Ga0157285_103322951	3300012897	Soil	VEEASAVVVLAVVDTVEAAAELGQLEAASVAVVVSTAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSSTIGSLSLTTVSG
Ga0137395_101108953	3300012917	Vadose Zone Soil	MPCGRVRTAEVEEASLVVVLAVVATSAAGAAGLDQLEAVSMVVSAAEQDAVLMDQDSVVVRAMEERAVSSNVMMQIGTA
Ga0137394_112034581	3300012922	Vadose Zone Soil	VEEDSVVVVLVVAGVDTPEAEVEVQGLAVATSAVEQEDSVVVRSMEEWAISSNVTMQIGIATGTGGMSISSAIGSLFLTTASGLGLIL
Ga0137419_101057951	3300012925	Vadose Zone Soil	VEEDSVVVVLAVADTPEAEVEVQGLAVVTSAVEQDSVLVDQDSVVVPSMEEWAVSSNVTMQIGTATGT
Ga0137404_100449291	3300012929	Vadose Zone Soil	VEEDSGAVAVVFMVVVLVVAGVDTPEAEVEVQGLAVPTSLVEQDSVLVDPDSVVVRSMEEWAVSSNVTMQIGTATGTGTIVTSSTIGSLFLTTASGSG
Ga0137407_123659831	3300012930	Vadose Zone Soil	VEEDSVVVVLAVAVVDTLEAEVEVQGSAGATSAVEQDSVLVDQDSVVVRPMEEWPVSSNATMQIGTAIGTGGVATSSTIGSLFLTTASGSGFILGIITIRT
Ga0164299_111288441	3300012958	Soil	VGEASVVVVLAVVDTAEVAAELGQLEAVSMVVSAAEQDSVLVDQDSVVVPSMEEWAVSSNVTMQIGTATGIGTMVTSSTIGSL
Ga0164301_108320921	3300012960	Soil	VGEASVVVVLAVVDTAEVAAELGQLEAVSMVVSAAEQDSVLVDQDSVVVPSMEEWAVSSNVTMQIGTATGIGTMVTSSTIG
Ga0164309_103534911	3300012984	Soil	VEEASVVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTM
Ga0157372_107389051	3300013307	Corn Rhizosphere	VVEDSVVVVLAVAVVDTLEAEVEVHGPEGATSALEQDSVLVDQDSVVVPSMEEWAVSSNVTMQIGTAT
Ga0173478_107960721	3300015201	Soil	MLRGRVPTAEVEEASAVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGTGT
Ga0137403_100460538	3300015264	Vadose Zone Soil	VEEGSVVVVLVVAAVDTPEAEVEVQGPPVATSPVEQDSVLVDPDSVVVRSMEEWAVSSNITMEIGTVIGTGTMAISSTIGSLSLTTVSGLDWIPGIILTTITMRTTTRI
Ga0132255_1010371971	3300015374	Arabidopsis Rhizosphere	VEEASVVVVLAVVDTAEVAAELGQLEAVSMVVSAAEQDSVLVDQDSVVVPSMEEWAVSSNVTMQIGTATGIGTMVTSSTIGSLFLTTVSG
Ga0184604_102656741	3300018000	Groundwater Sediment	VVVVLAVADTPEAEVEVQGLAAATSAVEQDSVLVDQDSVVIRSMEEWAVSSNVTMQIGTATGTGGMP
Ga0173479_100428382	3300019362	Soil	VVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGTG
Ga0193707_11162611	3300019881	Soil	VVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSS
Ga0193693_10230241	3300019996	Soil	VVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSSTI
Ga0193730_11553761	3300020002	Soil	VEVEEDSVVVVVDEAEAEVEMQDLAMATSAVEQDSVLPDPVSVVVRSMEEWGISPNVTMQIGIATGTGGMPISSAIGSLFLTTASGSGFILGIITIRTTTSIIT
Ga0210382_101640671	3300021080	Groundwater Sediment	VVVVLAVVDTLEAEVEVQGLAVATSAVEQDSVLVDQDSVVIRSMEEWAVSSNVTMQIGTTTGTGGMA
Ga0193719_103427101	3300021344	Soil	VVVVSAVVDTLEVEVQGLAVATSAVEQHSVLVDQDSVVIRSMEEWAMLSNATMQIGTATGTGGMPTSSA
Ga0193699_101784962	3300021363	Soil	VVVVLAVADTPEAEVEVQGLAVVTSAVEQDSVLVDQDSVVIRSMEGWAVSSNVTMQIGTATGTGGMPTSSAIGSLFLTTVSGSDWTGIILTTTTMR
Ga0193709_10326081	3300021411	Soil	VVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATG
Ga0193709_11291262	3300021411	Soil	VVVVLAVVDTLEAEVEVQGLAVATSAVEQDSVVVRSMEEWAISSNVTMQIGIATGTGGMSIS
Ga0193750_10383553	3300021413	Soil	VVVVLAVVDTLEAEVEVQGLAVATSAVEQDSVLVDQDPVVIRSMEEWAVSSNVTMQIGTTTGTGGMAISSAIGSLSLTTVSGLD
Ga0193695_10221071	3300021418	Soil	VVVVLAVADTPEAEVEVQGLAVVTSAVEQDSVLVDQDSVVVRSMEEWAVSSNVTMQIGTATGTGGM
Ga0193695_11032371	3300021418	Soil	VVVVLVVAVAGTPEAEVEVQGPAVATSAVEQDSVLPDPDSVVVRSMEEWAISSNVTMQIGIATGT
Ga0224452_12465871	3300022534	Groundwater Sediment	VVVVLAVVDTPEAEVEVQEPAVATSAVEQDSVLVDQDSVVVRSMEEWAVSLNVTMQIGI
Ga0222623_102987082	3300022694	Groundwater Sediment	VVVVLAVVDTLEAEVEVQGLAVATSAVEQDSVLVDQDSVVIRSMEEWAVSSNVTMQIGTATGTGGMPTSSAIGSLFLTTVSGSDWTGIILT
Ga0207642_108598311	3300025899	Miscanthus Rhizosphere	VVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILGDQDSMVVLSMEEWAVSSNVTMQIG
Ga0207693_114573852	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VVVVLVVAVAGTPEAQVEVQGLAVATLAVEEDSVVVRSTEEWDISSNVTMQIGIATGTGGMSISS
Ga0207657_114232152	3300025919	Corn Rhizosphere	VVVVLVVAVVDTLEAEVEVHGPAGATSALERDSVLVDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSSTIGSLSLTTVSG
Ga0207687_106854101	3300025927	Miscanthus Rhizosphere	VVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVLSMEEWAVSSNVTMQIGTATGTGTMATSSTIGSLSLTTVSGL
Ga0207665_110479041	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MPDGQPATAAVEEDSVVVVLVVAVAGTPEAEAEVQGLAVATSVVDQDLVVVRSMEEWAMSSNVTMQIGIATGTVGMSI
Ga0209155_12129722	3300026316	Soil	VVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILVDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSSTIGSLSLTTVSGLDWI
Ga0209154_12483651	3300026317	Soil	VVVVLAVVDTVEVAAELGQLEAAVAVVVSTAEQDSILGDQDSVVVHSMEEWAVSSNVTMQIGTATGTDTMATSSTIGSLSLTTVSGL
Ga0209375_13263421	3300026329	Soil	VVVVLAVVDTPEAEVEVQGPAVATSAVEQDSVLVDQDSVVVRSMEEWAVSLSVTMQIGTATGTGGMPISSTIGSLSLTTASGLGLMPDSIRGITCRITLTT
Ga0209267_13229261	3300026331	Soil	VVVVLAVVDTPEAEVEVQGLAVATSAVEEDSVLVDQDSVVVRSVEEWAVSSNVTMQIGTATGTGGMPTSSAIGSLFLTTVSGSGWMTDFILTITMRTTTRI
Ga0257149_10529931	3300026355	Soil	LPWLTPDGQLATAAVEEASVVVVLAVVDTAEVAAELGQLEAVSMVVSAAEQDSVLGDQDSVVVPSMEEWAVSSNVTIQIGTATGIGTMVTSSTIGS
Ga0257176_10450331	3300026361	Soil	VVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSVLGDQDSVVVPSMEEWAVSSNVTMQIGTTTGTGGMAISSAIGSLSLTTVSGL
Ga0209805_12989521	3300026542	Soil	VVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILVDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSSTIG
Ga0209474_106433461	3300026550	Soil	VVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILVDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSSTIGSLSLTTVSGLDWIPGFI
Ga0209577_103282671	3300026552	Soil	VVVVLAVVDTAEVAAEPGQLEAVSMVVSAAEQDSILGEQDSVVVPSMEEWAVSSNVTMQIGTAIGTGTMATSSTIGSLSLTTVSGLDWIPGFILTT
Ga0209577_105672591	3300026552	Soil	VVVVLVVAVAGTLEAEVEVRGLAVATSAVEQDSVVVRSMEEWAISLNVTMQIGIATGTGGMSISSAIGSLFLTTAS
Ga0209577_107185911	3300026552	Soil	VVVVLAVVDTPEAEVEVQGLAVATSAVEEDSVLVDQDSVVVRSVEEWAVSSNVTMQIGTATGTGGMPTSSAIGSLFLTTVSGSD
Ga0209179_11369911	3300027512	Vadose Zone Soil	VVVVLVGAVAATPEAEVEVQGLAVATSAVEQDSVVVRSMEEWAISSNVTMQIGIATGTGGMSISSAIGSLFLTT
Ga0209689_11387593	3300027748	Soil	VVVVLTVADTPEAGVEVQGLAAVTSAVEQDSVLVDQDSAVVRSMEEWAVSSNVTMQIGTATGTGGMPTSSAIGSLF
Ga0268266_105676681	3300028379	Switchgrass Rhizosphere	VVVVLVVVAGTPEVKVRGLAVATSAVEQDSVVVRSMEEWAISSNVTMQIGIATGTGGMSISSAIGSLFLTTASGLGLIL
Ga0307293_103107682	3300028711	Soil	VEVEEDSVVVVVDEAEAEVEMQGLAMATSAVEQDSVLPDPVSVVVRSMEEWGISPNVTMQIGIATGTG
Ga0307282_106559641	3300028784	Soil	VVVVLAVADTPEAEVEVQGLAVVTSAVEQDSVLVDQDSVVVRSMEEWAVSSNATMQIGTATGTGGMPTSSAIGSLFLTTVSGSDWTGIILT
Ga0307305_104012032	3300028807	Soil	VVVVLAVVDTPEAEVEVQEPAVATSAVEQDSVLVDQDSVVVRSMEEWAVSLNVTMQIGIATGTGGMSISSAIGSLFLTTASGLGLILGIIIIR
Ga0307312_110327531	3300028828	Soil	VVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSSTIGSLSLTTVSGLD
Ga0138298_15671821	3300031015	Soil	VVVVLVVAVAGTLEVEVRGLAVATSTVEQDSVVVRSMEEWAISSNVTMQIGIVTGTGGTSISSAIGSLFLTT
Ga0170834_1099408702	3300031057	Forest Soil	VVVVLAVVDTRQAEVEVQGPAVATSAVEQDSVLVDPDLVVVRSMEEWAVSSNVTMQIGTATGTGGMAISSAIGSLFLTTASGSGFILGIITIRTTSIIT
Ga0307501_102648322	3300031152	Soil	VVVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSSTIGSLSLTTV
Ga0170820_168783091	3300031446	Forest Soil	VVVLAVVDTVEVAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSSTIGSLSLTTVS
Ga0170819_142683011	3300031469	Forest Soil	VVVVLAVVDTRHAEVEVQGLAVATSAVEQDSVLVDPDLVVVRSMEEWAVSSNVTMQIGTATGTGGMPISSAIGSLFFDDG
Ga0170819_148085921	3300031469	Forest Soil	VVVVLAVVDTREAEVEVQGSAVATSAVEQDSVLVDPDLVVVRSMEEWAVSSNVTMQIGTATGTGGMAISSATGS
Ga0170818_1077110063	3300031474	Forest Soil	VVVVLAVVDTREAEVEVQGSAVATSAVEQDSVLVDPDLVVVRSMEEWAVSSNVTRQIGTATGTGGMA
Ga0310906_114622051	3300032013	Soil	VVVVLAVVDTAEVAAELGQLEAASVAVVVSAAEQDSILGDLDSVVVLSMEEWAVSSNVTMQIGTATGTGTMAT
Ga0307470_117477001	3300032174	Hardwood Forest Soil	VVVVLAVVDTAEVAAELGQLEAVSMVVSAAEQDSVLVDQDSVVVPSLEEWAVLSNVTMQIGTATGTGTMATS
Ga0307472_1001656311	3300032205	Hardwood Forest Soil	VVVLAVVDTVEAAAELGQLEAASVAVVVSAAEQDSILGDQDSVVVPSMEEWAVSSNVTMQIGTATGTGTMATSSTIGSLSLTTVSGLDWIP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098134

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences