NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F098131

Metagenome / Metatranscriptome Family F098131

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F098131
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 64 residues
Representative Sequence MSDDAKKDMVSRRGFLGVGSAALAAAGMLSAADAAGQEQKPYPTKNDRSASAPGPGN
Number of Associated Samples 97
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 91.26 %
% of genes near scaffold ends (potentially truncated) 94.23 %
% of genes from short scaffolds (< 2000 bps) 85.58 %
Associated GOLD sequencing projects 92
AlphaFold2 3D model prediction Yes
3D model pTM-score0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (73.077 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(9.615 % of family members)
Environment Ontology (ENVO) Unclassified
(21.154 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(46.154 % of family members)



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Multiple Sequence Alignments

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Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: Yes Secondary Structure distribution: α-helix: 36.47%    β-sheet: 0.00%    Coil/Unstructured: 63.53%
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Variant

510152025303540455055MSDDAKKDMVSRRGFLGVGSAALAAAGMLSAADAAGQEQKPYPTKNDRSASAPGPGNSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered RegionsSignal Peptide
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.23
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
73.1%26.9%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Peatland
Bog Forest Soil
Peatland
Freshwater Sediment
Sediment
Watersheds
Soil
Vadose Zone Soil
Tropical Forest Soil
Surface Soil
Soil
Soil
Forest Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Bog
Palsa
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Soil
Palsa
Bog
Arabidopsis Rhizosphere
Roots
Arabidopsis Rhizosphere
Host-Associated
4.8%4.8%7.7%3.8%2.9%9.6%3.8%4.8%9.6%2.9%4.8%6.7%3.8%5.8%2.9%2.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPIPI_022192802088090014SoilMNDAATKEMISRRKFLQTASVALAAAGLLSAADVAAQDQKPYPTKNDRXXXXXX
INPhiseqgaiiFebDRAFT_10167921733300000364SoilMNDXATKXMISRRKFXQTASVALAAAGLLSAADVAAQDQKPYPTKXDRSASDPGPGNSPLNKF*
JGI1027J11758_1296932933300000789SoilMNDAATKEMISRRKFLQTASVALAAAGLLSAADVAAQDQKPYPTKKDRSASDPGPGNSPLNKF*
JGI12635J15846_1069527413300001593Forest SoilMDEGSKKEAYSRRGFLGMGSAAALAAAGMIAATDALAQDKAPYPTKNDRSASAPGPGNPEIDNQNPDSFLPPPSDAGGV
Ga0062387_10016719923300004091Bog Forest SoilMSDDMKKDAFSRRGFLEMGTAALATAGILSADAAAQNQKPYPTKDDRSASAPGPGNPAIDAQNPDSFLPPPTD
Ga0062387_10114152623300004091Bog Forest SoilMSDDAKKDTVSRRGFLGMGSAALAAAGMLSAADAAAQEQHPYPAKNDRSASAPGPG
Ga0062387_10160382013300004091Bog Forest SoilMSEDAKKEMVSRRGFLGRGSVALAAAGMLSASDALAQDQKPYPTRNDRSASAPGPGNPPLDAQNPDSFLPPPSD
Ga0062388_10073916823300004635Bog Forest SoilMADDANKEVSRRGFLGLGSAALAAAGVLSAADAVAQEQHPYPTKGDRSSSAPGPGNPPIDAQNPDSFLPPQTDAGGV
Ga0066688_1065051833300005178SoilMNDVATKDMFSRRKFLETGSVALAAAGLLSAADAAAQVQKPYPTKNARSATDPGPGNPPLNGQNP
Ga0070709_1077294923300005434Corn, Switchgrass And Miscanthus RhizosphereMGDDSAQEILSRRGFLGMGSAALAAAGMLKATEAEGQQQKPENQKPYPTRNDRSTSAPGPGNPALDQQNP
Ga0070713_10005681213300005436Corn, Switchgrass And Miscanthus RhizosphereMKTAATLPSLIFRKEELMSEGTKKDKYSRRGFLGITSAILAASGMLPAAEAVEQEQKPYPSKSDRSSSAPGPGNSALDGQNPDSFLPPPSDAG
Ga0070699_10084602113300005518Corn, Switchgrass And Miscanthus RhizosphereMNDDATKDMFSRRKFLETGSVALAAVGMLATADAAAQDQNPKPTKNDRSATDPGPVNSPLDAQNPDSTW
Ga0070733_1097047313300005541Surface SoilMSDDTRKDLFSRRGFLGVGTVALAGGMLSRGDAAGQDQKQYPDKNDRSASAPGPGNSPLDAQ
Ga0070732_1006270623300005542Surface SoilMNDDAAQDKDAVSRRAFLGVGSMALAASGVLAAQTAAGQEQQPYPTKTDRSASAPGPGNSQVDDQNPD
Ga0066903_10869937023300005764Tropical Forest SoilMSDDKGKESLSRRGFLGVGSAALAAGVLKATEVAGQEQKPYPTKNDRSASAP
Ga0070766_1092600313300005921SoilMSDDAKNDLFSRRGFLGMGSAALAAAGMLAANASGQEQRAYPTKGDKSSSAPGPGNSVLDQQNPDSFLPPQSDAGGVQTFK
Ga0070766_1119087513300005921SoilMSDDSTKDMFSRRGFLGIGSAALAAARMLSVDDAVAQDQKPNPTPGNRSASDPGPGNPPLDAQNPDSAWPPAT
Ga0075030_10031334623300006162WatershedsMSDNVRRELVSRRGFLGAGSAAIAAAGLSATVAMGQEQKPYPNKDDRSASAPGPVNP
Ga0070715_1030066323300006163Corn, Switchgrass And Miscanthus RhizosphereMGDDSAQEILSRRGFLGMGSAALAAAGMLKATEAEGQEQKPYPTKNDRSVSAPGPGNP
Ga0116229_1113749923300009500Host-AssociatedMFSRRGFLGMGSAALAAAGVLSATEAAGQEQHPYPGKNDRSASAPGPGNPQIDSQNPDSFLPPPSDAGGVQTF
Ga0116133_103724713300009623PeatlandMSEDVKEMVSRRGFLGKGSVALAAAGMLSAADALAQDQKPYPTRNDRSASAPGPGNPPLDAQNPDSFLP
Ga0116133_116051013300009623PeatlandMSDDAKKDIVSRRGFLRLGSAALAATGMLSAADAVDQEQKPYPTKDDRSASAPGPGN
Ga0116125_114794313300009628PeatlandMSEGSKPDIVSRRGFLGMGSAALAAAGMLPAADTLAQDQKPYPSKEDRSASAPGPGNPPL
Ga0116117_103894913300009635PeatlandMSGDAKSELVSRRGFLGMGSAAIAAAGMLSAEAEGQEQKPYPTKNDRSASAPGPGNPQIDAQNPDSF
Ga0116135_1004042123300009665PeatlandVFKKKERSVSDDIRKDVYSRRGFLGVGSAALAAVGMMSAEAAAQEQRPYPTKDDRSASAPGPGNEQMDNQNPDSFL
Ga0116135_125129513300009665PeatlandMSDDATKEIFSRRGFLGMGSAALAAAGMLKATEATAQEQKPYPTKDDRSASAPGPGNPAIDAQNPDSF
Ga0116101_117918423300009759PeatlandMSEGSKPDIVSRRGFLGMGSAALAAAGMLPAADTLAQDQKPYPSKEDRSASAPGPGNPPLDAQN
Ga0126373_1217681223300010048Tropical Forest SoilMSDDKGKGIFSRRGFLGMGSAALAAAGMLKATEVSGQEQKPYPSKDDRSASAPG
Ga0126372_1319415613300010360Tropical Forest SoilMSDDMGKEFFSRRGFLGMGSAALAAGMLKATEAAGQEPKPYPTKNDRSASAPGPHNP*
Ga0126381_10016268513300010376Tropical Forest SoilMSDESMKDVSRRGFLEIGSAALAAAGMLSTSDAVGQEQTDRPYPKTDDRSASAPGPGNREIDSQNPDSFLPPQTDAG
Ga0137776_174948623300010937SedimentMSDDMGKDIFSRRGFLGMGSAALAAAGMLKASEAADQEQKPYPTKDDRSASAPGPGNPAIDQQNQDSFLPPSS
Ga0150983_1211869213300011120Forest SoilMDEKAKDLVSRRGFVGMGSAALAAAGMLAAKGATGQEQRAYPAMGDRNSSAPGPGNSTLDSQNPDSFLPPLTDAGGVATFKYP
Ga0137393_1087461423300011271Vadose Zone SoilMNDDATKDMFSRRKFLETGSVALAAAGLLSAADAAAQDQKPYPRKDDRSASDPG
Ga0137384_1080945813300012357Vadose Zone SoilMSEEASNDMYSRRGFLGVSSAALVAAGMLPTGDASGQEQKPYPSKSDR
Ga0137396_1011110733300012918Vadose Zone SoilMSDDAKKDMYSRRGFLGIGSVALAAAGMLSAADAAGQEQHPYPAKNDKSASAPGPGNP
Ga0137359_1107212923300012923Vadose Zone SoilMSDDAKDDAKKDMYSRRGFLGIGSAALAAAGMLSVADAAGQEQHPYPAKNDKSASAPGPGNP
Ga0137413_1035677813300012924Vadose Zone SoilMNDDATKDMFSRRRFLETGSAALAAAGLLSAADAAAQDQKPYPRKDDRSSSDP
Ga0137419_1159414013300012925Vadose Zone SoilMNDVATKDMFSRRKFLETGSVALAAVGLLSAADAAAQDQKPYPTKNARSATDPGPGNPPL
Ga0137416_1129917823300012927Vadose Zone SoilMSDDAKKDMYSRRGFLGIGSAALAAAGMLSVADAAGQEQHPYPTKSDKSSSAPGPGN
Ga0126369_1232370113300012971Tropical Forest SoilMSDDTGKEILSRRGFLGMGSAALAAAGMLKAAEAAGQEQKPYPAKNDRSVSAPGPGNPAIDQQNPDS
Ga0182018_1056550013300014489PalsaMRDDSKKDVVSRRGFLGMGSVALAAAGMLSVADAAAQEQKPYPAKDSRSASDPGPGNPLLDGQNPDSFFP
Ga0182016_1070492813300014493BogMFSRRGFLGMGSAALAAAGVLSATEAAGQEQHPYPGKNDRSASAPGP
Ga0182015_10001945283300014495PalsaMSADAKKDAVSRRGFLGMGSAALAAAGVLSAVDAAAQDQKPYPAKDGRSASAPGPGNPPLDV
Ga0137412_1039436023300015242Vadose Zone SoilMNDDATKDMFSRRRFLETGSAALAAAGLLSAADAAAQDQKPYPRKDDRSSSDPGPGN
Ga0132256_10257510813300015372Arabidopsis RhizosphereMGEYSHEERVMSDDSGKASISRRGFLGVGSAALAATGVLKAAEAAGQEQKPYPSKDDRSVTAPGPGN
Ga0132255_10055258513300015374Arabidopsis RhizosphereMSDDSGKANISRRGFLGVGSAALAAAGVMKVTEAAGQEQKPYPGKDDRSVSAPGPGNRLLDEQNPDSF
Ga0187820_114781023300017924Freshwater SedimentMSDDKAKEILSRRGFLGMGSAALAAAGMLNATEMERQQQKGEDQKPYPTKN
Ga0187817_1003612613300017955Freshwater SedimentMSEDAKRDTYSRRGFLGISSVALAVAGMLPATDAAGQEQKPYPSKDDRSASAPGPGNSALDAQNPDSF
Ga0187776_1162391023300017966Tropical PeatlandMRGKVARGALSRRAFLGSGSMALATAGMLSKDTVAQAQKAYPTRTDRSASAPAPGNPSLDDENPDSFLPPPTDAGGVQ
Ga0187816_1019463523300017995Freshwater SedimentMSDDREKEIFSRRGFLGIGSAALAAAGMLKATEAAGQEQKPYPTKDDRSASAPGPGNAAMDE
Ga0187804_1015728023300018006Freshwater SedimentMSEDAKRDTYSRRGFLGISSVALAAAGMLPATDAAGQEQKPYPSKGDRSASAP
Ga0187864_1019428723300018022PeatlandMSDDAKKDIVSRRGFLRLGSAALAATGMLSAADAVGQEQKPYPTKDDRSASAPGPGNPPLDAQNPDSFL
Ga0187885_1034135113300018025PeatlandMSDDTKKDSYSRRGFLGVGSAALVAAGMMSAADAEAQDQKPYPAKNDRSASA
Ga0187875_1022452713300018035PeatlandMNGFMHEDEKNTVFSRRGFLGVGSAALAAGMLSAADAAGQNQQYGQDQKVYPTKGDKSSSAPGPGNPQIDAQNPDSFLP
Ga0187871_1054060713300018042PeatlandVSDDIRKDVYSRRGFLGVGSAALAAVGMMSAEAAAQEQRPYPTKDDRSASAPGPGNEQMDNQNPDSF
Ga0187859_1000867883300018047PeatlandMDESTKKDTYSRRGFLGMGSAAALAAAGMIASTDAVAQDQAPYPTRNDRSASAPGPGNPEIDNQNPDSFLP
Ga0187772_1040350513300018085Tropical PeatlandVNKDMEKENFSRRGFLGIGSAALAAAGMLKATDAAGQEQKPYPTKDDRSTSAPGPGNAPIDE
Ga0210399_1064939313300020581SoilMATDAKKDMYSRRGFLGMSSVALAAAGMLPADEAAGQEQKPYPSKSDRSA
Ga0210400_1153647923300021170SoilMSDDAKKDMVSRRGFLGVGSAALAAAGMLSAADAAGQEQKPYPTKNDRSASAPGPGN
Ga0210386_1065074113300021406SoilMNDEAKKDAVSRRGFLGMGSAALAAAGLISTASAVGQEQKQYPSKDSRSASSPGPGNAALDAQ
Ga0210383_1044274513300021407SoilMSEEAKKDMYSRRGFLGMSSGALAAAGMLSSAEAAGQEQKSYPSKGDRSAS
Ga0210383_1156578523300021407SoilMAEDAKSEVSRRGFLGMGSAALAAAGVLSAADAVAQEQHPYPTKGDRSSSAPGPGNPPIDAQNPDSF
Ga0210394_1099653513300021420SoilMSDDAKKDLVSRRGFLGMGSAALAAAGILSAADAAAQEQRPYPTKGDRDSSAPGPGNPAIDSQNP
Ga0210391_1122005513300021433SoilMSDDANKDRFSRRGFLGMSSVALAAAGMLSADAAGQEQRPYPTKNERSASAPGPGNPPLDAQNPDS
Ga0210390_1134807123300021474SoilMSDDTKNDTFSRRGFLGMGSAALAAAGILAKDVAAQERAPYPTKGDKSSSAPGPGNSVLDQQNPDSFLPPQSDAG
Ga0210392_1145703823300021475SoilMNDEMKDGIMKDETKKDGVYSRRGFLGVGSAAFAAAGILSATDAAAQEQKPYPAKNDRSA
Ga0224549_102523613300022840SoilMSEDAKDSTVSRRGFLGMGSAALAAAGVLSAADAAGQDQKPYPTANDRSASAPGPGNPTLDSQNPD
Ga0224561_101297013300023030SoilMSDDAKNDSFSRRGFLGMGSAAIAAAGMLSADAAGQEQKPYPTKNDRSASAPGPG
Ga0228600_101410713300024123RootsMDEGSKKEAYSRRGFLGMGSAAALAAAGMIAATDAMAQDQAPYPTKNDRSASAPG
Ga0208193_106498413300025463PeatlandMSDDTKKDSYSRRGFLGVGSAALVAAGMMSAADAEAQDQKPYPAKNDRSASAPGPGNPPLDEQ
Ga0207685_1066871713300025905Corn, Switchgrass And Miscanthus RhizosphereMGDDSAQEILSRRGFLGMGSAALAAAGMLKATEAEGQEQKPYPTKNDRSVSAPGPGNPA
Ga0207664_1024733713300025929Agricultural SoilMGDDSAQEILSRRGFLGMGSAALAAAGMLKATEAEGQEQKPYPTKNDRSVSAPGPGNPAMDQQNPDSFLPPA
Ga0207665_1005506513300025939Corn, Switchgrass And Miscanthus RhizosphereMGDDSAQEILSRRGFLGMGSAALAAAGMLKATEAEGQEQKPYPTKNDRSVSAPGPGNPAMDQQ
Ga0209377_124083313300026334SoilMSDDVKDDAKKDMYSRRGFLGIGSAALAAAGMLSAADAAGQEQHPYPAKNDKSASAPGPGNPALDAQNPDSFLPPPS
Ga0179587_1065688613300026557Vadose Zone SoilMSEDSKKDVFSRRGFLGVGSAALAAAGMLSVADAAAQDQNPNPTNGNRSKSDPGPKNA
Ga0207943_10939413300027089Forest SoilMSNDPKKDLFSRRGFLEMGTAALAAAGVLSADAAAQNQKPYPTKDDRSASAPGPGNPAIDAQNPD
Ga0209735_106461523300027562Forest SoilMNDDSTKDMFSRRQFLGTGSAALAAAGMLTVADAAAQDQKQNPTKGSRSVSDPGPGNPPLDAQSPDS
Ga0209115_103454223300027567Forest SoilMSNDAKKEAFSRRGFLGMGSAAIAAAGMLSADAASQEQKPYPTKNDRSASAPGPGNPPLDTQ
Ga0209420_107330223300027648Forest SoilMSKEKAENETFSRRGFLGMGSAALAAAGMLSSADAAGQEEKPYPTVNDRSASAPGPGNPALD
Ga0209588_124170033300027671Vadose Zone SoilMNDDATKDMFSRRRFLGTGSAALAAAGLLSAADAAAQDQKPYPTKNDRSATDPGPGNPPL
Ga0209333_100564713300027676Forest SoilMSKEKAENETFSRRGFLGMGSAALAAAGMLSSADAAGQEEKPYPTVNDRSASAP
Ga0209139_1026096513300027795Bog Forest SoilMSDDTKKDAFSRRGFLEIGTAALAAAGMLSADAAAQNQKPYPTKDDRSASAPGPGNPAIDAQNPDSF
Ga0209274_1056147223300027853SoilMSDDANKDVVSRRGFLGMGSAALAAAGMLSAVDASSQLEHPYPAKGDRSASAPGPGNPAIDGQNPDSFLPP
Ga0209698_1021524433300027911WatershedsMAVGAKQELYSRRGFLGMSSAALAAAGVLPAVEAAAQEQKPYPSKNDRS
Ga0209698_1091143313300027911WatershedsMSEGAKKDKYSRRGFLGMGSAALAAAGMTPAAEAVGQEQKPYPSKDDRSASAPGPGNSA
Ga0302156_1049515713300028748BogVSNDLKTDMFSRRGFLGMGSAALAAAGVLSATEAAGQEQHPYPGKNDRSASAPG
Ga0308309_1019794323300028906SoilMSDDAKKDLVSRRGFLGMGSAALAAAGILSAEASAQEQQHPYPTKGDRSSSAPGPGNPAIDSQNPDS
Ga0311328_1068899113300029939BogVSNDLKTDMFSRRGFLGMGSAALAAAGVLSATEAAGQEQHPYPGKNDRSASAPGPGNPQI
Ga0311340_1005935043300029943PalsaMSDETRKDLFSRRGFMEMGSAALAAAGMLSATDAAAQDQKPYPTKNDRSASAPGPGNPPLDAQNPDSFLPPP
Ga0311352_1135457323300029944PalsaMSGDAKSELVSRRGFLGMGSAAIAAAGMLSAEAEGQEQKPYPTKNDRS
Ga0302277_131327623300029982BogMSGDAKSELVSRRGFLGMGSAAIAAAGMLSAEAEGQEQKPYPTKNDRSASAPGPGNPQIDAQNPDSFLPP
Ga0302177_1058440913300030053PalsaMSDDARNDTYSRRGFLGMGSAALAAAAMLSAADAGAQDQKPYPTKSDRSASAPGPGNPPLDDQNPDSFLPPSTD
Ga0265760_1015748023300031090SoilMTEEGKKDTYSRRGFLGVGSAALAAAGMLSAADATAQDQKPYPTKSDRSASAPGPG
Ga0170824_11110669723300031231Forest SoilMNYDAKKDSFSRRGFLGVGSVALAGGILSAGAAAGQDQNPYPNKTDRSASAPGPGNSPLDAQNPDSFLPP
Ga0307476_1012994813300031715Hardwood Forest SoilMSDEAKESVSRRGFLGMGSAALAAGMLSAEAAAQEQKQYPAKSDRSASAPGPGNAQIDDQNPDSF
Ga0307477_1112159323300031753Hardwood Forest SoilVLRKEKSKNNNEDADRDIYSRRGFLGMGSAALAAAGLVSASDAAAQEQRPYPSKSDRSTSAPGPINPPL
Ga0307478_1175468813300031823Hardwood Forest SoilMSDDTKNDTFSRRGFLGMGSAALAAAGILAKDVAAQERAPYPTKGDKSSSAPGPGNSVLDQQNPDSFLPPQSDAGGVQT
Ga0310912_1076650133300031941SoilMSDDVGKEIFSRRGFLGMGSAALAAAGMLKATEMAAQEQKPYPTKNDRSASAPGPGNPPIDQQNPD
Ga0335085_1022679933300032770SoilMSDDKAKEIFSRRGFLGMGSAALAAAGMLKATEMEGQQPKGEDQKPYPTKNDRSVSAPG
Ga0335080_1133210123300032828SoilMSDESTKDVSRRGFLEMGSAALAAAGMLSAPAVAQEQKSYPTKDDRSASAPGPGNREIDSQNPDSFLPPQTDAGGV
Ga0335069_1017145713300032893SoilVGDEKAKEIFARGFLRMGSKALAAGMLKATKMETQQQKGQDQKPYPSKNDRSVSAPGPGNPSLDQQNPDSFFPVHD
Ga0335072_1048798113300032898SoilMSDDAKNDAFSRRGFLGMGSAALAAAGMLGARDAGAQEQRPPYPTKGDKSSSAPG
Ga0335077_1113048013300033158SoilMSDDRDKEIFSRRGFLGIGSAVLAGVGMLKATKVTGQDQKPYPGKDDRSSSAPGPGNPAIDEQNPDSFLPPPTDAGGV
Ga0334790_121044_2_1963300033887SoilMNDDAKTDLVSRRGFLGVGSAALAAGMLSAVDAAGQDQKLYPTKTDRSATAPGPGNSQLDAQNPD


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