Basic Information | |
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Family ID | F098124 |
Family Type | Metagenome |
Number of Sequences | 104 |
Average Sequence Length | 56 residues |
Representative Sequence | MNLSKPVNPIRNYAFGSVITALILLSPVVAFLMAIAAEMLIDLLYVRGTSA |
Number of Associated Samples | 82 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 0.00 % |
% of genes from short scaffolds (< 2000 bps) | 0.00 % |
Associated GOLD sequencing projects | 75 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.53 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (100.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (39.423 % of family members) |
Environment Ontology (ENVO) | Unclassified (50.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (55.769 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 53.16% β-sheet: 0.00% Coil/Unstructured: 46.84% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.53 |
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Visualization |
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Bog Forest Soil Watersheds Soil Terrestrial Soil Tropical Forest Soil Soil Soil Hardwood Forest Soil Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Termite Gut Arabidopsis Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGIcombinedJ51221_101467411 | 3300003505 | Forest Soil | VSPSKPANPVRNFAAGSGIAALILLGPVAALLMVAAAEILIDLLIVGGTSAVCAVAAGGIGLV |
Ga0062387_1006604352 | 3300004091 | Bog Forest Soil | MSPSKPANPVRNCAVGSAIAALILLGPVAALLMVAAAEMVIDLLIVGGTSAVCAVAAGGIGLVLSRKFWQ |
Ga0066388_1024667252 | 3300005332 | Tropical Forest Soil | MNLSKPVNPIQNYAFGSVIAALILFSPVLAFLVIIAAEMLIDLLMVGETSAVCVVAAGGIGLVLSRKFWRRPWVLRQLK |
Ga0070709_109421231 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | MNLGKPVNPIRNYAFGSVITALILLSSVVAFLLVIAAEMLIDLLMVGGTSAVC |
Ga0070710_100932763 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | MNLAKPVNPLRNYAFGSVITALILLSPVVAFLIVIAAEMLIDLLMVGGTS |
Ga0070711_1009527422 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MSPSKPPHPIQNYAFGSVITALAVLSPVVAFLMVIAAEML |
Ga0066903_1013868191 | 3300005764 | Tropical Forest Soil | MNLSKPVNPIQNYAFGSVITALILLSPVIAFLMAIAAEMMIDLLRVGGTSA |
Ga0066903_1052737212 | 3300005764 | Tropical Forest Soil | MNLSKPANPVRNYAFGSVIAVLILLSPVVAFLMAIAAEMLIDSLMVGGTSAVCAVA |
Ga0075026_1004233042 | 3300006057 | Watersheds | MNLSKPVNPIRNYALGSVITALILLSPVVAFLMVIAAEMLIDLLMVGGTSAVCVVAAGSIGLVLSRKFWRRP |
Ga0070715_103760041 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | MSPSKPANPVRNYAVGSAIAALILLGPVAALLVVSAAEILIDLLIVGGTSAVCA |
Ga0070716_1005097911 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | MNLSKPVNPIRNYAVGSVITALILLSPVVAFLMVIAAEMLIDILMVGGTSAACSVAAGGIGLLLSRKFWRRP |
Ga0070712_1017954172 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MNLAKPVNPIRNYGVRSVITALILLSPVVALLMVIAAEMLIDLLMVAGASAVCAVAAGAIGLVLSRKFWQHRVGTRLVFNGAR* |
Ga0070765_1000175851 | 3300006176 | Soil | VSPSKPANPVRNFAAGSGIAALILLGPVAALLMVAAAEMLIDLLIVGGTSAVCAVAA |
Ga0131853_106448511 | 3300010162 | Termite Gut | MNISKPVTPLRNYAAGSVITALILLSPVVAFLMVIAAEMLTDLLMVGGTSAVFAVAAGSIGLVLSRKFWRRE |
Ga0126370_105778891 | 3300010358 | Tropical Forest Soil | MNLSKPVNPIQNYAFGSVITALILLSPVIAFLMAI |
Ga0126372_127952641 | 3300010360 | Tropical Forest Soil | MNLSKPVNPIRNYAFGSVIAALILFSPVLAFLVIIAAEMLIDLLMVGGTSAVCVVAAGGIGLV |
Ga0126378_114363691 | 3300010361 | Tropical Forest Soil | MNLSKPVNPIRCYAFGSVFAALILLSPVLAFLVVIAAEMLIDLLMAGGTSAVCAIAAGG |
Ga0126378_124430352 | 3300010361 | Tropical Forest Soil | MNLSRPVNPIRNYAVGSVIAALILLSPVFALLVVIGAEMLIDLLIVGGT |
Ga0126379_129713092 | 3300010366 | Tropical Forest Soil | MSLSKPVNPMRNYAVGSVITALILYGPVLAFLVVIAAEMLTDLLMVGGTSAVCAIAAGGIGLVLSRKFWRLSCSGASGGP* |
Ga0136643_104271461 | 3300010369 | Termite Gut | MNISKPVTPLRNYAAGSVITALILLSPVVAFLMVIAAEMLTDLLMVG |
Ga0126381_1007795432 | 3300010376 | Tropical Forest Soil | MNLSKPVNPIRNYAFGSVIAALILFSPVVAFLMVIAAEMLIDLLMVGGTSAVCVVAAGGIGLVLSRKFWRRPWVL |
Ga0126381_1008016201 | 3300010376 | Tropical Forest Soil | MSPSKPANPVRNYAIGSAIAALILLSPVVAFLLVIAAEMLIDLLVVGGTGAVCAVAAGSIGLV |
Ga0126381_1016317551 | 3300010376 | Tropical Forest Soil | MNLSKPANPIRYYAFGSVITALILLSPVVAFLMVIAAEMLID |
Ga0126381_1019887391 | 3300010376 | Tropical Forest Soil | MNLSKPVNPIRNYAFGSVITALILLSPVVAFLMAIAAEMLIDLLYVRGTSA |
Ga0126381_1033912941 | 3300010376 | Tropical Forest Soil | MNLSKPVNPIQNYAFGSVITALILLSPVIAFLMAIAAEMMIDLLRVGGTSAV |
Ga0126383_131604351 | 3300010398 | Tropical Forest Soil | MNLGKPVNPIRNYAFGSVIAALILLSPVFAFLAVIAAEMLIDSL |
Ga0126383_132384982 | 3300010398 | Tropical Forest Soil | MNLSKPANPIRNYALGSVITALILLSPVLAFLMVIAAEMLIDLLMVGGK |
Ga0134123_129269811 | 3300010403 | Terrestrial Soil | MSPSKPANPVRNCAVGSAIAALILLGPVAALLMVAAAEMLIDLLIVGGT |
Ga0164299_110193582 | 3300012958 | Soil | MSPSKPANPIQNYAFGSVITALAVLSPVVAFLMVIAAEMLIDILMVGATSAACAVAAGGI |
Ga0164302_115808382 | 3300012961 | Soil | MSLSRPANPVRNYAVGAAIAALILLGPVAALLMVAAAEMLIDLLIVGGTSAVCAVAAGGIGLVLSRRFW |
Ga0164306_115180252 | 3300012988 | Soil | MNLSKPVNPIRNYAVGSVITALILLSPVLAFLMVIAAEMLIDLLMV |
Ga0132257_1024183171 | 3300015373 | Arabidopsis Rhizosphere | MNLSKPANPIRNYAVGSAITALILLGPVVTFLIVIAAEMLTDLLMVGGTS |
Ga0182036_104000031 | 3300016270 | Soil | MKPDKTVNPVRKYAVGSVITALLLLSPVVALLMVSAAEMLIDVLIAGGASATCAVAAGGFGLVLFRKFWR |
Ga0182041_101579871 | 3300016294 | Soil | VNLSKAVNPFRNYACGSVITALILLSPVVAFLMAIAAEMLIDLLYVRGTS |
Ga0182041_102621531 | 3300016294 | Soil | MNLSKPVNPIRNYAFGSVITALILFSSVFAFLVVIAAEMLIDLMMVGGTSAVCVVAAGGIGLVLSRKFWRR |
Ga0182041_106333463 | 3300016294 | Soil | MNLSKPVNPIRNYAFGSVITALILFSPVFAFLVVSAAEML |
Ga0182035_109748873 | 3300016341 | Soil | VNLSKAVNPFRNYAFGSVITALILLSPVVAFLMAIAAEMLIDL |
Ga0182035_118080091 | 3300016341 | Soil | MNRSKAVNPFRNYAFGSVITALILLSPVVAFLMAIAAEMLIDL |
Ga0182034_102110042 | 3300016371 | Soil | MILSKPVRPIRNYAFRSVIMALILLSPVIGFLMVIAAEMLIDLLMVGGTTQFAPSPLAV |
Ga0182034_106088112 | 3300016371 | Soil | MNLSKPVNPIRNYAFGSVIAALILFSPVVAILMVIAAEMLIDLLM |
Ga0182039_104847461 | 3300016422 | Soil | MKPDKTVNPVRKYAVGSVITALLLLSPVVALLMVSAAEMLIDVLIAGRASAVCAVAASGF |
Ga0182038_108235391 | 3300016445 | Soil | MKPDKTVNPVRKYAVGSVITALLLLSPVVALLMVSAAEMLIDVLIAGGASATCAVAAGGFGLV |
Ga0210406_100529077 | 3300021168 | Soil | MSPSKPAHPIQNYAFGSVITALAVLSPVVAFLMVIAAEMLIDILMVGG |
Ga0210396_107007772 | 3300021180 | Soil | MSPSKPANPVRNCAVGSAIAALILLGPVAALLMVAAAEMLIDLLILGGTSAVCAVAAGGI |
Ga0210387_110145971 | 3300021405 | Soil | MNLSKPVNPIRNYAVGSVITALILLGPVVTFLMVIAAQILIDLLTVG |
Ga0210386_113028691 | 3300021406 | Soil | MNLSKPVNPIRNYAVGSVITALILLGPVVTFLMVIAAQILIDLLTVGGTSAVCAVAAGSIGL |
Ga0210391_108746181 | 3300021433 | Soil | MSPSKPANPVRNCAVGSAIAALILLGPVAALLMVAAAEMLIDLLILGGTSAVCAVAAGGIGLVLSRKFWQ |
Ga0210390_116105541 | 3300021474 | Soil | MNLSKPVNPIRNYAFGSVITALILLSPVVAFLMVIAAEMLIDLL |
Ga0210402_110560621 | 3300021478 | Soil | MSPSKPPHPIQNYAFGSVITALAVLSPVVAFLMVIAAEMLIDILMVGATS |
Ga0126371_113872632 | 3300021560 | Tropical Forest Soil | MNLSKPVNPIRNYAFGSVITALILLSPVVAFLMAIAAEMLID |
Ga0126371_120778731 | 3300021560 | Tropical Forest Soil | MNLSKPVNLRNYAFGSVITALILLSPVVAFLMVIAAEMLIDLLYVRGTSAVCAVVASGIGLVLS |
Ga0126371_125535942 | 3300021560 | Tropical Forest Soil | MNLSKPVNPIRNYAFGSVIAALILLSPVIAFLMAIAAEML |
Ga0126371_132653732 | 3300021560 | Tropical Forest Soil | MNLSKPANPIRYYAFGSVITALILLSPVVAFLMVIAAEMLIDLLMVGGTSAVCVVAAG |
Ga0207685_106902292 | 3300025905 | Corn, Switchgrass And Miscanthus Rhizosphere | MSPSKPANPVRNCAVGSAIAALILLGPVAALLMVAAAEMLIDLLILAGTSAVWAITAGGIGLVLS |
Ga0207665_109826942 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | MNLSKPVNPIRNYAVGSVITALILLSPVVAFLMVIAAEMLIDLLMVG |
Ga0257162_10126202 | 3300026340 | Soil | MSPCKPANPVRNYAVGSAIAALILLGPVAALLMVAAAEMLIDLLIVGGTSAVCAVAAGGIGLVLSRKF |
Ga0257161_10949022 | 3300026508 | Soil | MNLSKPVNPIRNYAVGSVITALILLSPVVVFLMVIAAEMLIDLLMVGGTSAVCV |
Ga0207949_10291362 | 3300026999 | Forest Soil | VSPSKPANPVRNFAAGSGIAALILLGPVAALLMVAAAEMLIDLLIVGGTSAVCAVAAGGI |
Ga0207948_10161451 | 3300027174 | Forest Soil | MNLSKPVNPIRNYAVGSVITALILLGPVVTFLMVIAAQILIDLLMVGGISAVCAVAAGSI |
Ga0308309_115243432 | 3300028906 | Soil | MNLSKPVNPIRNYAVGSVITALILLGPVVTFLMVIAAQILIDLLTVGGTSAVC |
Ga0318516_100665112 | 3300031543 | Soil | MILSKPVRPIRNYAFGSVIMALILLSPVIGFLMVIAAEMLIDLLMVGGTTQFAPSPLAV |
Ga0318538_105194011 | 3300031546 | Soil | MNLSKPVNPIRNYAFGSVIAALILLSPVIAFLIAIAA |
Ga0318538_108180721 | 3300031546 | Soil | MNLSKPVNPIRNYAFGSAIAALILLSPVFAFLVVIAAEMLIDLLMVGGTNAICAVAAGGIGLALSRKLWRRPK |
Ga0318573_102028771 | 3300031564 | Soil | MNLSKPVNPIRYYAFGSVIMAFILLSPVIVFLMVIAAEMLIDLLMVGGTSTVCTVAAGGI |
Ga0310915_109183333 | 3300031573 | Soil | MNLSKPVNPIRDYAFGSAIAALILLSPVFAFLVVIAAEMLIDLLMVG |
Ga0318555_104520291 | 3300031640 | Soil | MNLSKPVNPIRDYAFGSVITALILLSPIFAFLVVIAAEMLIDLLMVGGTSAVCVVAVGGIGLVLSRKFWRRPE |
Ga0318542_104329512 | 3300031668 | Soil | MNRSKAVNPFRNYAFGSVITALILLSPVVAFLMAIAAEMLIDLLYVRGTSAVCAVVASGIGLVLSRKFWRR |
Ga0318574_102674511 | 3300031680 | Soil | MNLSKPVNPIRDYAFGSVITALILLSPIFAFLVVIAAEMLIDLLMVGGTSA |
Ga0306917_102704451 | 3300031719 | Soil | MNRSKAVNPFRNYAFGSVITALILLSPVVAFLMAIAAEMLIDLLY |
Ga0318500_100450814 | 3300031724 | Soil | VNLSKAVNPFRNYAFGSVITALILLSPVVAFLMAIAAEMLIDLLYVRGTSAVC |
Ga0318492_104463051 | 3300031748 | Soil | MNLSKPVNPIRNYAFGSVITALILFSSVFAFLVVIA |
Ga0307477_101824042 | 3300031753 | Hardwood Forest Soil | MSPSKPAHPIQNYAFGSVITALAVLSPVVAFLMVIAAEM |
Ga0307477_108996072 | 3300031753 | Hardwood Forest Soil | MNLSKPVNPIQNYAFGSVITTLILLSPVVAFLMVIAAEMLIDLLMVGGTSAVCAAAAAGI |
Ga0318509_105980511 | 3300031768 | Soil | MNLSKPVNPIRNYAFGSVIAALILFSPVVAFLMVIAAEMLIDLLMVGGTSAVCVVAAGGIGLVLSRKFWRRP |
Ga0318509_107402781 | 3300031768 | Soil | MNLSKPVNLIRYYAFGSVITALILLSPVVAFLMAIAAEMLIDLLYVRGTSAVCAVVASGIGLVLSRKFWR |
Ga0318526_101369802 | 3300031769 | Soil | MNLSKPVNPIRNYAFGSVIAVLILLSPVIVFLMVIAAE |
Ga0318521_107357172 | 3300031770 | Soil | MNLSKPVNPIRDYAFGSVITALILLSPIFAFLVVIAAEMLIDLMMVGGTS |
Ga0318547_110325881 | 3300031781 | Soil | MNLSKPVNPIRNYAFGSVIAALILLSPVIAFLIAIAAEMLIDLLTVGGTSAVFAVAAGGVALDVSTTEMT |
Ga0318552_100380431 | 3300031782 | Soil | MNLSKPVNPIRYYAFGSVIMAFILLSPVIVFLMVIAAEMLIDLLMVGGTSTVCTVAAGGIGLV |
Ga0318512_102118361 | 3300031846 | Soil | MILSKPVRPIRNYAFGSVIMALILLSPVIGFLMVIAAEMLIDLLMVGGT |
Ga0306919_100368831 | 3300031879 | Soil | MNLSKPVNPIRNYAFGSAITALILFSPVFAFLVAV |
Ga0306919_103928161 | 3300031879 | Soil | MNLSKPVNPIRNYAFGSVIAALILLSPVIAFLIAIAAEM |
Ga0306919_114596311 | 3300031879 | Soil | MNRSKAVNPFRNYAFGSVITALILLSPVVAFLMAIAAEMLID |
Ga0306925_101381805 | 3300031890 | Soil | MNLSKPVNPIRDYAFGSVITALILLSPIFAFLVVIAAEMLIDLLMVGGTSAVCVVAVGG |
Ga0306925_107921524 | 3300031890 | Soil | MNLSKPVNPIRNYAFGSVITALILFSPVFAFLVVIAAEMLIDLLMMGGTSAICLFAAGGIGLVLVRKFWRRP |
Ga0306925_117080531 | 3300031890 | Soil | MNLSKPVNPIRNYAFGSVIAALILLSPVIAFLMAIA |
Ga0318551_104658022 | 3300031896 | Soil | MNLSKPVNPIRYYAFGSVIMAFILLSPVIVFLMVIAAEMLIDLLMVGGTSTVCTVAAGGIGLVLSRKLWRRPK |
Ga0318520_108947683 | 3300031897 | Soil | VNLSKAVNPFRNYAFGSVITALILLSPVVAFLMAIAAEMLIDLLYVRGT |
Ga0306923_101666561 | 3300031910 | Soil | VNLSKAVNPFRNYAFGSVITALILLSPVVAFLMAIAAEMLIDLLYVRGTSAVCVVV |
Ga0310912_100127371 | 3300031941 | Soil | VNLSKAVNPFRNYAFGSVITALILLSPVVAFLMAIAAEML |
Ga0310916_104407901 | 3300031942 | Soil | MNLSKPVNPIRNYAFGSVIAALILLSPVIAFLIAIAAEMLID |
Ga0310913_112143221 | 3300031945 | Soil | MNLSKPVNPIRNYAVGSAITALILLGPVVTFLMVIAAEMLTDLLMVGGASAVCAVAAGSIGLVLSRKFWRRPAVVD |
Ga0318531_104805511 | 3300031981 | Soil | MNLSKPVNPIRNYAFGSVIAALILLSPVIAFLMAIAAEMLIDLLVVGGTSTVCAAAAGVIGLVLSPKSGGVLR |
Ga0306922_118705632 | 3300032001 | Soil | MNLRKPVNPIRNYAVRSVITALILLSPVVTFLMVIAAEMLTDSLMVGGTSAVCAVVAGSIGLVLSRKFWW |
Ga0318569_105588231 | 3300032010 | Soil | MNLSKPVNPIRNYAFGSVITALILFSSVFAFLVVIAAEMLIDLMMVGGTSAVCVVAAGGIGLVLS |
Ga0318507_104789743 | 3300032025 | Soil | VNLSKAVNPFRNYAFGSVITALILLSPVVAFLMAIAAE |
Ga0310911_103207041 | 3300032035 | Soil | MNLSKPVNPIRNYAFGSVITALILFSPVFAFLVVIAAEMLIDLLMVSGTSAV |
Ga0318559_101393773 | 3300032039 | Soil | VNLSKAVNPFRNYAFGSVITALILLSPVVAFLMAIAAEMLIDLLYVRGTSAV |
Ga0318532_100808772 | 3300032051 | Soil | MDLSKPVNPIRYYAFGSVIMAFILLSPVIVFLMVIAAEMLIDLLMVGGTSTVCTVAAGGIGLVLSRKLWRRPK |
Ga0318533_105659721 | 3300032059 | Soil | MNLSKPVNPIRNYAFGSVIAALILLSPVIAFLIAIAAEMLIDLLTVGGTSAVFAVAAGGIGWVLSRKFW |
Ga0318533_114444531 | 3300032059 | Soil | MKPDKTVNPVRKYAVGSVITALLLLSPVVALLMVSAAEMLIDVLIAGGASATCAVAAGG |
Ga0306924_112180671 | 3300032076 | Soil | RPIRNYAFGSVIMALILLSPVIGFLMVIAAEMLIDLLMVGGTTQFAPSPLAV |
Ga0310914_108221552 | 3300033289 | Soil | MNLSKPVNPIRNYAFGSVIAALILLSPVIAFLIAIAAEMLIDLLTVGGTSAVFAVAAGGIGLVLSRKFWRRPVVV |
Ga0318519_101742571 | 3300033290 | Soil | MKPDKTVNPVRKYAVGSVITALLLLSPVVALLMVSAAEMLIDVLIAGGASATCAVAAGGF |
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