NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F098026

Metagenome / Metatranscriptome Family F098026

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F098026
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 46 residues
Representative Sequence PVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKS
Number of Associated Samples 90
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 2.88 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(37.500 % of family members)
Environment Ontology (ENVO) Unclassified
(90.385 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(79.808 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62
1LPfeb10P16500mDRAFT_10169561
2LPjun09P16500mDRAFT_10309391
3LPjun09P12500mDRAFT_10326603
4LPjun09P12500mDRAFT_10419312
5GBIDBA_101089262
6GOS2242_10556834
7Ga0066610_101386772
8Ga0066849_101885292
9Ga0066838_100107071
10Ga0066383_101409022
11Ga0066368_101277771
12Ga0066374_101151371
13Ga0066382_102950501
14Ga0081762_11671673
15Ga0066836_100725431
16Ga0068490_11494611
17Ga0068470_19064503
18Ga0068473_14909341
19Ga0068473_17144902
20Ga0068501_11989421
21Ga0068483_11973475
22Ga0068483_16112602
23Ga0068480_13543373
24Ga0068502_11623411
25Ga0068502_13956771
26Ga0068502_14151141
27Ga0068481_14025376
28Ga0068481_15363264
29Ga0068493_101738651
30Ga0099695_11241201
31Ga0099696_11901623
32Ga0099697_14751802
33Ga0098033_11310701
34Ga0098054_11759892
35Ga0098054_12297961
36Ga0066376_103135523
37Ga0066376_103882442
38Ga0098045_10764983
39Ga0098041_11720702
40Ga0066366_104371942
41Ga0098052_13666742
42Ga0117902_13585301
43Ga0114996_106479382
44Ga0114996_106646282
45Ga0114996_108208962
46Ga0114997_106917391
47Ga0105236_10417782
48Ga0114933_101231884
49Ga0114999_111507531
50Ga0115012_114830962
51Ga0105235_1299812
52Ga0098061_11434203
53Ga0098047_102116511
54Ga0163108_108842052
55Ga0181367_10485012
56Ga0181430_10465011
57Ga0181432_11539582
58Ga0211679_10169413
59Ga0211634_10855901
60Ga0211698_10694131
61Ga0211570_11337952
62Ga0211477_102927392
63Ga0211564_105166542
64Ga0206684_12629582
65Ga0206677_101618491
66Ga0206679_105017862
67Ga0206680_101397133
68Ga0206690_100536212
69Ga0213858_100608114
70Ga0226832_101231261
71Ga0226832_104152652
72Ga0233435_11627642
73Ga0233445_11225273
74Ga0208668_10207901
75Ga0208298_10285073
76Ga0208553_11084882
77Ga0208837_10389522
78Ga0208880_10969971
79Ga0207986_10697862
80Ga0208642_10861822
81Ga0208764_103737022
82Ga0209019_10577312
83Ga0209752_10653111
84Ga0209192_102995111
85Ga0209711_103062551
86Ga0209404_100662535
87Ga0257108_10989623
88Ga0257109_11558001
89Ga0257112_101544011
90Ga0257112_102720451
91Ga0257112_102721351
92Ga0308025_12334191
93Ga0308019_101315213
94Ga0302119_101836321
95Ga0308011_101664071
96Ga0302120_103219051
97Ga0315322_100660751
98Ga0310122_102307261
99Ga0315329_102076581
100Ga0315333_101313953
101Ga0315333_102594381
102Ga0310345_113408282
103Ga0315334_118680791
104Ga0372840_240358_392_535
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 80.00%    β-sheet: 0.00%    Coil/Unstructured: 20.00%
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51015202530354045PVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKSSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy


Visualization
Unclassified
100.0%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Marine
Deep Ocean
Seawater
Seawater
Marine
Marine Oceanic
Marine
Seawater
Marine
Seawater
Marine
Seawater
Marine
Seawater
Marine
Marine
Hydrothermal Vent Fluids
Diffuse Hydrothermal Flow Volcanic Vent
Hydrothermal Vent Plume
Seawater
Deep Subsurface
37.5%5.8%6.7%13.5%8.7%6.7%2.9%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
LPfeb10P16500mDRAFT_101695613300000173MarineVQARLAFQKQYFDMHYDIDTTAKQWTMMLETIKTNIEYFKQKK*
LPjun09P16500mDRAFT_103093913300000179MarinePVQARLTFQKQYFDMHYDIDTTAKQWTMMLETIKTNIEYSKQKK*
LPjun09P12500mDRAFT_103266033300000222MarineAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKDKKS*
LPjun09P12500mDRAFT_104193123300000222MarineSFWEPSVQARLTFQKQYFDMHYDIDTTAKQWTMMLETIKTNIEYSKQKK*
GBIDBA_1010892623300001683Hydrothermal Vent PlumeGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKS*
GOS2242_105568343300001967MarineVQAGLAFQKQYFDMHYDIDTTAKQWEMMLQTIKNNIERSKEQKS*
Ga0066610_1013867723300004276MarineWEPPVQSGLAFQKQYYDMHYDIETTAKQWIMMLETIKNNIENTKEKKS*
Ga0066849_1018852923300005430MarineLKDAIDNFWEAPVQGGLAVQKQYFDMHYDIETTAKQWEMMLSTIKSNLEKKS*
Ga0066838_1001070713300005592MarineAIDNFWKPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKENIERSKEKKS*
Ga0066383_1014090223300005953MarineVQARLTFQKQYFDMHYDIDTTAKQWTMMLETIKTNIEYSKQKK*
Ga0066368_1012777713300006002MarineAIENFWEPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIEKTKEKKS*
Ga0066374_1011513713300006012MarineKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKS*
Ga0066382_1029505013300006013MarineYYDMHYDIETTARQWTMMLETIKGNIEKTKEKKS*
Ga0081762_116716733300006083Diffuse Hydrothermal Flow Volcanic VentQYFDMHYDIETTARQWTMMLETIKGNIEKTKEKKSQ*
Ga0066836_1007254313300006166MarineIDNFWEAPVQGGLAVQKQYFDMHYDIETTAKQWEMMLSTIKSNLKKNNE*
Ga0068490_114946113300006303MarineLTFQKQYFDMHYDIDTTAKQWTMMLETIKTNIEYSKQKK*
Ga0068470_190645033300006308MarineFWEPPVQARLTFQKQYFDMHYDIDTTAKQWTMMLETIKTNIEHSKQKK*
Ga0068473_149093413300006316MarineNFWKPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIEKIKEKKS*
Ga0068473_171449023300006316MarineIENFWKPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIEKTKEKKS*
Ga0068501_119894213300006325MarineLRDAIDSFWEPPVLARLAFQKQYFDMHYDIDTTAKQWTMMLETIKTNIEYSKQKK*
Ga0068483_119734753300006330MarineENFWEPPVQGGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIEKTKEKKS*
Ga0068483_161126023300006330MarineYVLKDAINNFWEPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIEKTKEKKS*
Ga0068480_135433733300006335MarineEPPVQARLTFQKQYLDMHYDIDTTAKQWTMMLETIKTNIEYSKQKK*
Ga0068502_116234113300006336MarineARLTFQKQYFDMHYDIDTTAKQWTMMLETIKTNIEYSKQKK*
Ga0068502_139567713300006336MarineLTFQKQYFDMHYDIDATAKQWEMMLETIKTNIEYSKQKK*
Ga0068502_141511413300006336MarineVQAGLAFQKQYYDMHYDIETTAKQWAMMLETIKNNIENTKEKKS*
Ga0068481_140253763300006339MarineFSYVLREAIDSFWEPPVQARLAFQKQYFDMHYDIDTTAKQWTMMLETIKTNIEYSK*
Ga0068481_153632643300006339MarineFAYVLKDAINNFWEPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKS
Ga0068493_1017386513300006341MarineEPPVQGGLAFQKQYYDMHYDIETTAKQWTMMLETIKGNIEKTKEKKS*
Ga0099695_112412013300006344MarineHVLRDAIDSFWEPPVQARLTFQKQYFDMHYDIDTTAKQWTMMLETIKTNIEYSKQKK*
Ga0099696_119016233300006346MarineAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKS*
Ga0099697_147518023300006347MarineINNFWEPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIEKTKEKKS*
Ga0098033_113107013300006736MarineIDSFWESPVQTRLTFQKQYFDMHYDIDTTAKQWIMMLETIKTNIEYSKQKK*
Ga0098054_117598923300006789MarineVLKDAIDSFWQGPVQAGLGFQKQYFDMHYDIDTTAKQWEMMLETIKTNIEYSKQKK*
Ga0098054_122979613300006789MarinePVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKS*
Ga0066376_1031355233300006900MarineGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIEKTKKKKS*
Ga0066376_1038824423300006900MarineYYDMHYDIETTAKQWTMMLETIKNNIEKTKEKKS*
Ga0098045_107649833300006922MarineAFQKQYYDMHYDIDTTAKQWTMMLETIKNNIENTKEKKS*
Ga0098041_117207023300006928MarineWEPSVQAGLGFQKQYFDMHYDIETTSKQWEMMLQTIKNNIERSKEQKS*
Ga0066366_1043719423300007283MarineKFAYVLKDAIDNFWEPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNLEKKS*
Ga0098052_136667423300008050MarineAGLGFQKQYFDMHYDIDTTAKQWEMMLETIKSNIEYSKQKK*
Ga0117902_135853013300009104MarineLAFQKQYFDMHYDIDTTAKQWSLMLETIKNSLEKKS*
Ga0114996_1064793823300009173MarineKDAIDSFWEAPVQAGLAFQKQYFDMHYDIDTTAKQWEMMLGTIKTNLEYSKQKK*
Ga0114996_1066462823300009173MarineAFQKQYFDMHYDIDTTAKQWTMMLSTIKDNLEKSK*
Ga0114996_1082089623300009173MarineKDAINNFWEPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKDKKSQ*
Ga0114997_1069173913300009425MarinePVQAGLAFQKQYFDMHYDIDTTAKQWEMMLETIKTNIEYSKQKK*
Ga0105236_104177823300009619Marine OceanicVQGGLAFQKQYFDMHYDIETTARQWTMMLETIKNNLEKKS*
Ga0114933_1012318843300009703Deep SubsurfaceKDAIDNFWEPPVQAGLAFQKQYFDMHYDIDTTAKQWSLMLETIKNSLEKKS*
Ga0114999_1115075313300009786MarineFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKDKKSQ*
Ga0115012_1148309623300009790MarineDNFWEAPVQAGLAFQKQYFDMHYDIDTTAKQWTLMLETIKNSLEKKS*
Ga0105235_12998123300009791Marine OceanicQYYDMHYDIETTAKQWTMMLETIKGNIEKTKEKKS*
Ga0098061_114342033300010151MarineYYDMHYDIDTTAKQWTMMLETIKNNIENTKEKKS*
Ga0098047_1021165113300010155MarineNFWEAPVQAGLAFQKQYFDMHYDIDTTAKQWTMMLETIKTSLEKKS*
Ga0163108_1088420523300012950SeawaterAYVLKDAIDNFWEAPVQGGLAFQKQYFDMHYDIETTAKQWEMMLSTIKSNLEKKS*
Ga0181367_104850123300017703MarineRGLAFQKQYYDMHYDIDTTAKQWTMMLETIKNNIENTKEKKS
Ga0181430_104650113300017772SeawaterPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKS
Ga0181432_115395823300017775SeawaterAYVLKDAINNFWEPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNLEKTP
Ga0211679_101694133300020263MarineDAIGSFWEPPVQAGLAFQKQYFDMHYDIDTTAKQWEMMLETIKTNIEYSKQKK
Ga0211634_108559013300020279MarineYVLKDAIDNFWEPPVQAGLAFQKQYFDMHYDIDTTAKQWTLMLETIKNSLEKKS
Ga0211698_106941313300020290MarineGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKS
Ga0211570_113379523300020344MarineFWEPPVQAGLAFQKQYYDMHYDIDTTAKQWTMMLETIKNNIENTKEKKS
Ga0211477_1029273923300020374MarineQAGLGFQKQYFDMHYDIETTAKQWEMMLQTIKNNIERSKEQKS
Ga0211564_1051665423300020445MarineAPVQGGLAVQKQYFDMHYDIETTAKQWEMMLSTIKSNLKKNNE
Ga0206684_126295823300021068SeawaterPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKS
Ga0206677_1016184913300021085SeawaterAYVLKDAIDNFWEAPVQAGLAFQKQYFDMHYDIDTTAKQWSLMLETIKTSLEKKS
Ga0206679_1050178623300021089SeawaterFQKQYFDMHYDIETTARQWTMMLETIKGNIEKIKEKKS
Ga0206680_1013971333300021352SeawaterAYVLKDAINNFWEPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKS
Ga0206690_1005362123300021355SeawaterVLKDAINNFWEPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKS
Ga0213858_1006081143300021356SeawaterSVQAGLGFQKQYFDMHYDIETTAKQWEMMLQTIKNNIERSKEQKS
Ga0226832_1012312613300021791Hydrothermal Vent FluidsDAIDNFWEAPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNLEKKS
Ga0226832_1041526523300021791Hydrothermal Vent FluidsFQKQYYDMHYDIETTARQWTMMLETIRGNIENTKEKKS
(restricted) Ga0233435_116276423300024252SeawaterKDAINNFWEPPVQSGLAFQKQYYDMHYDIETTAKQWIMMLETIKNNIENTKEKKS
(restricted) Ga0233445_112252733300024339SeawaterVQTGLAFQKQYYDMHYDIETTAKQWIMMLETIKNNIENTKEKKS
Ga0208668_102079013300025078MarineDAIDNFWEAPVQGGLAFQKQYFDMHYDIETTAKQWEMMLSTIKSNLEKKS
Ga0208298_102850733300025084MarinePVQAGLAFQKQYYDMHYDIDTTAKQWTMMLETIKNNIENTKEKKS
Ga0208553_110848823300025109MarineLAFQKQYFDMHYDIETTARQWTMMLETIKGNIEKTKEKKS
Ga0208837_103895223300025234Deep OceanAFQKQYYDMHYDIETTAKQWTMMLETIKNNIEKTKEKKS
Ga0208880_109699713300026085MarineKQYFDMHYDIDTTAKQWEMMLQTIKNNIERSKEQKS
Ga0207986_106978623300026192MarineFWKPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKENIERSKEKKS
Ga0208642_108618223300026210MarineTFQKQYFDMHYDIDTTAKQWIMMLETIKTNIEYSKQKK
Ga0208764_1037370223300026321MarineQKQYYDMHYDIDTTAKQWTMMLETIKNNIENTKEKKS
Ga0209019_105773123300027677MarineEPPVQARLTFQKQYFDMHYDIDTTAKQWIMMLETIKTNIEYSKQKK
Ga0209752_106531113300027699MarineWEPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKS
Ga0209192_1029951113300027752MarineVLKDAIESFWEPPVQAGLAFQKQYFDMHYDIDTTAKQWEMMLGTIKSNLEYSKQKK
Ga0209711_1030625513300027788MarineDSFWEAPVQAGLAFQKQYFDMHYDIDTTAKQWEMMLGTIKTNLEYSKQKK
Ga0209404_1006625353300027906MarineIDNFWEAPVQGGLAVQKQYFDMHYDIETTAKQWEMMLSTIKSNLEKKS
Ga0257108_109896233300028190MarineVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKS
Ga0257109_115580013300028487MarineQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKS
Ga0257112_1015440113300028489MarineDAIDSFWEPPVQARLAFQKQYFDMHYDIDTTAKQWTMMLETIKTNIEYSKQKK
Ga0257112_1027204513300028489MarineRDAIDSFWEPPVQARLAFQKQYFDMHYDIDTTAKKWTMMLETIKTNIEYSKQKK
Ga0257112_1027213513300028489MarineAINNFWEPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKS
Ga0308025_123341913300031143MarineGSFWEPPVQAGLAFQKQYFDMHYDIDTTAKQWEMMLETIKTNIEYSKQKK
Ga0308019_1013152133300031598MarineKQYFDMHYDIDTTAKQWEMMLETIKTNIEYSKQKK
Ga0302119_1018363213300031606MarineDAIENFWEPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKS
Ga0308011_1016640713300031688MarineIGSFWEPPVQAGLAFQKQYFDMHYDIDTTAKQWEMMLETIKTNIEYSKQKK
Ga0302120_1032190513300031701MarineNFWEPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKS
Ga0315322_1006607513300031766SeawaterSYVLKDAIDSFWEAPVQAGLGFQKQYFDMHYDIDTTAKQWEMMLETIKSNIEYSKQKK
Ga0310122_1023072613300031800MarineAIENFWEPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKENIEKTKEKKS
Ga0315329_1020765813300032048SeawaterQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKDKKS
Ga0315333_1013139533300032130SeawaterQYYDMHYDIETTAKQWTMMLETIKNNIENTKKKKS
Ga0315333_1025943813300032130SeawaterFWEPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKEKKS
Ga0310345_1134082823300032278SeawaterKDAIDNFWEAPVQAGLAFQKQYFDMHYDIDTTAKQWTMMLETIKTSLEKKS
Ga0315334_1186807913300032360SeawaterLAFQKQYFDMHYDIETTAKQWEMMLETIKNNLEKKSES
Ga0372840_240358_392_5353300034695SeawaterPPVQAGLAFQKQYYDMHYDIETTAKQWTMMLETIKNNIENTKDKKSQ


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