Metagenome / Metatranscriptome Family F097928

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097928
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	70 residues
Representative Sequence	MRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKRA
Number of Associated Samples	87
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	48.08 %
% of genes near scaffold ends (potentially truncated)	57.69 %
% of genes from short scaffolds (< 2000 bps)	74.04 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.038 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (22.115 % of family members)
Environment Ontology (ENVO)	Unclassified (31.731 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.846 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.90% β-sheet: 0.00% Coil/Unstructured: 37.10%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00072	Response_reg	19.23
PF04773	FecR	3.85
PF13278	Obsolete Pfam Family	2.88
PF13468	Glyoxalase_3	1.92
PF00589	Phage_integrase	1.92
PF13579	Glyco_trans_4_4	0.96
PF00383	dCMP_cyt_deam_1	0.96
PF14534	DUF4440	0.96
PF13439	Glyco_transf_4	0.96
PF00482	T2SSF	0.96
PF01569	PAP2	0.96
PF02517	Rce1-like	0.96
PF13633	Obsolete Pfam Family	0.96
PF02547	Queuosine_synth	0.96
PF10431	ClpB_D2-small	0.96
PF12860	PAS_7	0.96
PF01699	Na_Ca_ex	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.96
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.96
COG0809	S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)	Translation, ribosomal structure and biogenesis [J]	0.96
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.04 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.04 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.04 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	70.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	70.19 %
Oligoflexia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia	0.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.96 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	57.69 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	4.81 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	1.92 %
Bdellovibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales	0.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.96 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	57.69 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	4.81 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1.92 %
Bdellovibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae	0.96 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.96 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	57.69 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	4.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.96 %
Bdellovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio	0.96 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.96 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	57.69 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	3.85 %
Bdellovibrio bacteriovorus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio → Bdellovibrio bacteriovorus	0.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.96 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.96 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	57.69 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3.85 %
Bdellovibrio bacteriovorus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio → Bdellovibrio bacteriovorus	0.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.96 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.96 %
Unclassified	root	N/A	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16814560	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	10148	Open in IMG/M
2088090014\|GPIPI_17092952	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1386	Open in IMG/M
2088090014\|GPIPI_17390009	All Organisms → cellular organisms → Bacteria	2243	Open in IMG/M
2170459009\|GA8DASG01BPO7C	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	558	Open in IMG/M
2170459023\|GZGNO2B01D8QJH	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	528	Open in IMG/M
2199352025\|deepsgr__Contig_38643	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2058	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1025939	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	642	Open in IMG/M
3300000890\|JGI11643J12802_10351942	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	631	Open in IMG/M
3300000955\|JGI1027J12803_103656038	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	728	Open in IMG/M
3300002128\|JGI24036J26619_10026901	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300004156\|Ga0062589_100932964	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300004157\|Ga0062590_100015307	All Organisms → cellular organisms → Bacteria	3404	Open in IMG/M
3300004479\|Ga0062595_100510833	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	906	Open in IMG/M
3300005172\|Ga0066683_10642280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio → Bdellovibrio bacteriovorus	637	Open in IMG/M
3300005174\|Ga0066680_10594155	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	693	Open in IMG/M
3300005177\|Ga0066690_10104333	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1824	Open in IMG/M
3300005178\|Ga0066688_11000435	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	509	Open in IMG/M
3300005289\|Ga0065704_10048427	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	772	Open in IMG/M
3300005294\|Ga0065705_10261678	All Organisms → cellular organisms → Bacteria → Proteobacteria	1159	Open in IMG/M
3300005295\|Ga0065707_10016280	All Organisms → cellular organisms → Bacteria	2703	Open in IMG/M
3300005332\|Ga0066388_104651670	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300005451\|Ga0066681_10359585	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300005564\|Ga0070664_100825022	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	868	Open in IMG/M
3300005764\|Ga0066903_100187014	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3068	Open in IMG/M
3300005764\|Ga0066903_100580946	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1934	Open in IMG/M
3300006173\|Ga0070716_100249879	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1208	Open in IMG/M
3300006175\|Ga0070712_100016965	All Organisms → cellular organisms → Bacteria → Proteobacteria	4708	Open in IMG/M
3300006791\|Ga0066653_10017624	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	2621	Open in IMG/M
3300006796\|Ga0066665_11433067	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300006796\|Ga0066665_11676966	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300009137\|Ga0066709_102898352	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	633	Open in IMG/M
3300009792\|Ga0126374_10393260	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	966	Open in IMG/M
3300010042\|Ga0126314_11355925	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	534	Open in IMG/M
3300010047\|Ga0126382_10041909	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2611	Open in IMG/M
3300010048\|Ga0126373_10110290	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2559	Open in IMG/M
3300010154\|Ga0127503_10962548	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	546	Open in IMG/M
3300010154\|Ga0127503_11324999	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	796	Open in IMG/M
3300010159\|Ga0099796_10355448	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	633	Open in IMG/M
3300010301\|Ga0134070_10241917	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	673	Open in IMG/M
3300010323\|Ga0134086_10151918	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	845	Open in IMG/M
3300012198\|Ga0137364_10633302	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	806	Open in IMG/M
3300012198\|Ga0137364_10952623	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	650	Open in IMG/M
3300012199\|Ga0137383_10961292	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	623	Open in IMG/M
3300012200\|Ga0137382_10054530	All Organisms → cellular organisms → Bacteria	2509	Open in IMG/M
3300012201\|Ga0137365_11086808	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	577	Open in IMG/M
3300012202\|Ga0137363_10003270	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	9843	Open in IMG/M
3300012202\|Ga0137363_10018225	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4663	Open in IMG/M
3300012202\|Ga0137363_10175448	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1703	Open in IMG/M
3300012202\|Ga0137363_11724565	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	519	Open in IMG/M
3300012205\|Ga0137362_11701307	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	518	Open in IMG/M
3300012208\|Ga0137376_10277208	All Organisms → cellular organisms → Bacteria	1455	Open in IMG/M
3300012353\|Ga0137367_10009464	All Organisms → cellular organisms → Bacteria	7777	Open in IMG/M
3300012355\|Ga0137369_10067758	All Organisms → cellular organisms → Bacteria	3035	Open in IMG/M
3300012361\|Ga0137360_10964214	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	736	Open in IMG/M
3300012362\|Ga0137361_10384128	All Organisms → cellular organisms → Bacteria	1289	Open in IMG/M
3300012582\|Ga0137358_10896882	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	582	Open in IMG/M
3300012917\|Ga0137395_10035175	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3054	Open in IMG/M
3300012923\|Ga0137359_10325652	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1367	Open in IMG/M
3300012923\|Ga0137359_11711832	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	516	Open in IMG/M
3300012957\|Ga0164303_10729046	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	672	Open in IMG/M
3300015242\|Ga0137412_10188622	All Organisms → cellular organisms → Bacteria	1651	Open in IMG/M
3300015356\|Ga0134073_10039250	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300015357\|Ga0134072_10009238	All Organisms → cellular organisms → Bacteria	2248	Open in IMG/M
3300015371\|Ga0132258_10266226	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4198	Open in IMG/M
3300015372\|Ga0132256_100021626	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	5718	Open in IMG/M
3300017654\|Ga0134069_1075728	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1080	Open in IMG/M
3300017654\|Ga0134069_1138445	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300018066\|Ga0184617_1001589	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3365	Open in IMG/M
3300018074\|Ga0184640_10327722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	694	Open in IMG/M
3300018468\|Ga0066662_10013170	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4390	Open in IMG/M
3300018468\|Ga0066662_10218718	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1525	Open in IMG/M
3300018482\|Ga0066669_10743594	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300018482\|Ga0066669_12318738	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	512	Open in IMG/M
3300019361\|Ga0173482_10087875	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1102	Open in IMG/M
3300019789\|Ga0137408_1283507	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300020170\|Ga0179594_10304614	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	603	Open in IMG/M
3300025315\|Ga0207697_10005890	All Organisms → cellular organisms → Bacteria → Proteobacteria	5630	Open in IMG/M
3300026306\|Ga0209468_1003898	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5941	Open in IMG/M
3300026306\|Ga0209468_1019844	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2409	Open in IMG/M
3300026307\|Ga0209469_1014175	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2906	Open in IMG/M
3300026314\|Ga0209268_1046511	All Organisms → cellular organisms → Bacteria	1400	Open in IMG/M
3300026327\|Ga0209266_1266583	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	544	Open in IMG/M
3300026330\|Ga0209473_1306438	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	530	Open in IMG/M
3300026335\|Ga0209804_1287549	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300026377\|Ga0257171_1052889	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	705	Open in IMG/M
3300026498\|Ga0257156_1021911	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1271	Open in IMG/M
3300026524\|Ga0209690_1036446	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2312	Open in IMG/M
3300026550\|Ga0209474_10711035	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	521	Open in IMG/M
3300027385\|Ga0207540_106281	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502	Open in IMG/M
3300027453\|Ga0207624_103786	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300028807\|Ga0307305_10127997	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300030844\|Ga0075377_11772041	Not Available	720	Open in IMG/M
3300030916\|Ga0075386_10036398	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	517	Open in IMG/M
3300030917\|Ga0075382_11779951	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	542	Open in IMG/M
3300030969\|Ga0075394_12066186	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	591	Open in IMG/M
3300031170\|Ga0307498_10097482	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	899	Open in IMG/M
3300031231\|Ga0170824_104233071	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	554	Open in IMG/M
3300031231\|Ga0170824_106044014	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	702	Open in IMG/M
3300031231\|Ga0170824_114231859	All Organisms → cellular organisms → Bacteria → Proteobacteria	1003	Open in IMG/M
3300031231\|Ga0170824_119368133	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	524	Open in IMG/M
3300031754\|Ga0307475_10076004	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2578	Open in IMG/M
3300031944\|Ga0310884_11075841	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502	Open in IMG/M
3300032013\|Ga0310906_10472805	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300032180\|Ga0307471_103935489	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	525	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.19%
Host-Associated	Host-Associated	4.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.35%
Plants	Host-Associated → Plants	4.81%
Aquatic	Environmental → Aquatic	3.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.35%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.88%
Freshwater	Environmental → Aquatic → Freshwater	1.92%
Sediment	Environmental → Aquatic → Sediment	1.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.58%
Loam	Environmental → Terrestrial → Soil → Loam	5.77%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	27.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.54%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	22.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	21.15%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.88%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.96%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.96%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2170459023	Grass soil microbial communities from Rothamsted Park, UK - FA3 (control condition)	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027385	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A5-11 (SPAdes)	Environmental	Open in IMG/M
3300027453	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE15-D (SPAdes)	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300030844	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030917	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB5 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030969	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02155990	2088090014	Soil	MRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNLRRWVKEREAMSGVLLTRILERLKELKKESRELPRHSK
GPIPI_03304090	2088090014	Soil	RRNNMRQVERQQLIELGILTPDCDPRISTSQKVSPEVKRNVRRWVKEREAMSGVLLTRILELLKRA
GPIPI_02632250	2088090014	Soil	MTQAERQQLIEFGVLTPDCDPRITTSRKVSPGHKQKVRRWVKERERMTGGLLLTRILERLKRA
F47_10229930	2170459009	Grass Soil	VPFFCHNNGINSFAKLFLSERRNNMRQVERQQLIELGILTPDCDPRIITSQKVSPERKRNIRRWVKDREAMSGALLTRILERLKKSLKGGTK
FA3_07720600	2170459023	Grass Soil	MSQAERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKRA
deepsgr_00300710	2199352025	Soil	MRQVEREQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILELPXXXXXXXXXXX
KanNP_Total_noBrdU_T14TCDRAFT_10259392	3300000596	Soil	TLQGWVFVPFFCHNNGINLFAKLFLSEKRNKMRQVERQQLIALGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGLLLTRILERLKRA*
JGI11643J12802_103519421	3300000890	Soil	GWVFVPFFCHNNGINLFAKLFLSERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVFLARILERLKRA*
JGI1027J12803_1036560383	3300000955	Soil	QLIELGILTPDCDPRIITSQKVSPERKRNLRRWVKEREAMSGVLLTSILERLKEIKKTRVNYRDTANDKVI*
JGI24036J26619_100269013	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	FISERRNNMRQVERQQLIELGILTPDCDPRISTSQRVSPEVKRNVRRWVKEREAMSGVLLTRILELLKRA*
Ga0062589_1009329642	3300004156	Soil	MRQVERQQLIELGILTPDCDPRISTSQRVSPEVKRNVRRWVKEREAMSGVLLTRILELLKRA*
Ga0062590_1000153071	3300004157	Soil	WVFVPFFCHNNGINSFAKLFISERRNNMRQVERQQLIELGILTPDCDPRISTSQRVSPEVKRNVRRWVKEREAMSGVLLTRILELLKRA*
Ga0062595_1005108332	3300004479	Soil	RQVERQQLIELGILTPDCDPRITTSQKVSPERKRNLRRWVKEREAMSGVLLTRILERLKELKKESRELPRHSK*
Ga0066683_106422801	3300005172	Soil	NNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVIRWVKEREAMSGVLLTRILERLKRA*
Ga0066680_105941553	3300005174	Soil	GWVFVPFFCHNNGIHLLAKLFLSERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKRA*
Ga0066690_101043333	3300005177	Soil	MRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKRA*
Ga0066688_110004352	3300005178	Soil	MRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKELKKGPASS*
Ga0065704_100484271	3300005289	Switchgrass Rhizosphere	MRQVEREQLIELGILTPDCDPRITTSQKVSPERKRNVGRWVKEREAMSGVLLTRILECLKSAKKRRNWSKAVG*
Ga0065705_102616783	3300005294	Switchgrass Rhizosphere	MRQVERQQLIELGILTPDCDPRISTSQKVSPEVKRNVRRWVKEREAMSGVLLTRILELLKRA*
Ga0065707_100162804	3300005295	Switchgrass Rhizosphere	MRQVEREQLIELGILTPDCDPRITTSQKVTPERKRNVERWVKEREAMSGVLLTRILECLKRV*
Ga0066388_1046516701	3300005332	Tropical Forest Soil	MRQVEREQLIGLGILTPDCDPKITTSQKVSPERKRNVRRSVKEREAMSGVFLTRILERLK
Ga0066681_103595853	3300005451	Soil	KLFLSERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKRA*
Ga0070664_1008250222	3300005564	Corn Rhizosphere	MRQVERQQLIELGILTPDCDPRISPSRKVSPERKRNVRRWVKEREAMSGVLLTRILELLKRA*
Ga0066903_1001870144	3300005764	Tropical Forest Soil	MTLVERQRLIELGILTPDCDPRITTSRKVPPERKREIGRWVKDREAMSGPLLTTLLGLLKTAHCRFKNGGTK*
Ga0066903_1005809462	3300005764	Tropical Forest Soil	MTQMERQQLIQLGVLTPDCDPRITTSRKVSPERKREVKRWVKEREAMSGVLLTRIVERLKRA*
Ga0070716_1002498791	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRQVERQQLIELGILTPDCDPRISTSQRVSPEVKRNVRRWVKEREAMSGVLLTRILERLKELKKEPASS*
Ga0070712_1000169653	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRQVEREQLIELGILTPDCDPKITTSQKVSPERKRNVRRWVKEREAMSGVFLTRILERLKRA*
Ga0066653_100176244	3300006791	Soil	MRQVERQQLIELGILTPDCDPRITTSQKVSSERKRNVRRWVKEREAMSGVLLTRILERLKRA*
Ga0066665_114330672	3300006796	Soil	QQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMPGVLLTRILERLKELKKGPASS*
Ga0066665_116769661	3300006796	Soil	ERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSPERRRNVRRWVKEREAMSGVLLTRILERLKELKKGPASS*
Ga0066709_1028983522	3300009137	Grasslands Soil	MRQVERQQLIELGILTPDCDPRITTSQKVSPERRRNVRRWVKEREAMSGVLLTRILERLKELKKGPASS*
Ga0126374_103932603	3300009792	Tropical Forest Soil	MTLVERQRLIELGILTPDCDPRITTSRKVPSERKREIGRWVKEREAMSGVLLTRILERLKRV*
Ga0126314_113559252	3300010042	Serpentine Soil	ILQRWVFVPFFCHNNGINSFAKLFISERRNNMRQVERQQLIELGILTPDCDPRIRTSQKVSPELKRDVRRGVKEREAMSGVLLTRILELLKRA*
Ga0126382_100419093	3300010047	Tropical Forest Soil	MTTVERQQLIDLGILTPDCDPRITTSRKVSPERKRKIRRWVKEREAMSGVLLSRILERLKRV*
Ga0126373_101102905	3300010048	Tropical Forest Soil	MTQVERQQLIELGILTPDCDPRITTSRKLSPERKRKVGRWVKEREAMSGVLLTRILERLKRV*
Ga0127503_109625481	3300010154	Soil	FAKLFLSERRNNMRQVEREQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVFLTRILERLKRA*
Ga0127503_113249992	3300010154	Soil	FAKAFLSERRNNMRQVERQQLIKLGILTPHCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERVKRA*
Ga0099796_103554481	3300010159	Vadose Zone Soil	LLAKLFLSERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKRA*
Ga0134070_102419171	3300010301	Grasslands Soil	INSFAKLFLSERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKRA*
Ga0134086_101519183	3300010323	Grasslands Soil	MRQLERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLK
Ga0137364_106333021	3300012198	Vadose Zone Soil	NNGINSFAKLFLSERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKRA*
Ga0137364_109526232	3300012198	Vadose Zone Soil	FFCHNNGINSFAKLFLSERRNNMRQVERQQLIELGILTPDCDPRISPSQKVSPERKRNVRRRVKEKEAMSGVLLTRILELLKRA*
Ga0137383_109612922	3300012199	Vadose Zone Soil	HLFAKLFLSERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKELKKGPASS*
Ga0137382_100545304	3300012200	Vadose Zone Soil	MRQVEREQLIELGILTPDCDPRMTTSQKVSQERKRNVRRWVKEREAMSGVFLTRILERLKRA*
Ga0137365_110868082	3300012201	Vadose Zone Soil	FLSERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGALLTRILERLKRA*
Ga0137363_1000327013	3300012202	Vadose Zone Soil	MRQVERQRLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKRA*
Ga0137363_100182257	3300012202	Vadose Zone Soil	MRQVERQQLIELGILTPDCDPRITTSQKVSPEHKRNVRRWVKEREAMSGVLLSRILERLKRA*
Ga0137363_101754482	3300012202	Vadose Zone Soil	FLSERRSNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKGREAMSGVLLTRILERLKRA*
Ga0137363_117245652	3300012202	Vadose Zone Soil	FLSERRSNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNIRRWVKEREAMSGVLLTRILERLKELKKGPASS*
Ga0137362_117013071	3300012205	Vadose Zone Soil	RRNNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKQNVRRWVKEREAMSGALLTRILERLKRA*
Ga0137376_102772083	3300012208	Vadose Zone Soil	MRQVEREQLIELGILTPDCDPRITTSQKVSQERKRNVRRWVKEREAMSGVFLTRILERLKRA*
Ga0137367_100094641	3300012353	Vadose Zone Soil	MRQVERQQLIELGILTPDCDPRITTSRKVSPERKRNVRRWVREREAMSGVLLIRILERLKRA*
Ga0137369_100677585	3300012355	Vadose Zone Soil	MRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVREREAMSGVLLIRILERLKRA*
Ga0137360_109642142	3300012361	Vadose Zone Soil	FLSERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSPEHKRNVRRWVKEREAMSGVLLSRILERLKRA*
Ga0137361_103841281	3300012362	Vadose Zone Soil	RSNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNIRRWVKEREAMSGVLLTRILERLKELKKGPASS*
Ga0137358_108968821	3300012582	Vadose Zone Soil	QVERQQLIELGILTPDCDPRITTSQKVSPERKRNIRRWVKEREAMSGVLLTRILERLKELKKGPASS*
Ga0137395_100351758	3300012917	Vadose Zone Soil	MRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNIRRWVKEREAMSGVLLTRILERLKELKKGPASS*
Ga0137359_103256521	3300012923	Vadose Zone Soil	LSERRSNVRQVERQPLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKGREAMSGVLLTRILERLKRA*
Ga0137359_117118321	3300012923	Vadose Zone Soil	INLFAKLFLSERRNNMRQVEREQLIELGILTPDCDPRITTSQKVSQERKRNVRRWVKEREAMSGVFLTRILERLKRA*
Ga0164303_107290461	3300012957	Soil	FFCHNNGINLFAKLFLSERRNKMRQVEREQLIGLGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVFLTRILERLKRA*
Ga0137412_101886225	3300015242	Vadose Zone Soil	MRQVEREQLIELGILTPDCDPRMTTSQKVSPERKRNIRRWVKEREAMSGVLLTRILERLKRA*
Ga0134073_100392502	3300015356	Grasslands Soil	FAKLFLSERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSSERKRNVRRWVKEREAMSGVLLTRILERLKRA*
Ga0134072_100092381	3300015357	Grasslands Soil	ERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSSERKRNVRRWVKEREAMSGVLLTRILERLKRA*
Ga0132258_102662266	3300015371	Arabidopsis Rhizosphere	FISERRNNMRQVERQQLIELGILTPDCDPRISPSQKVSPERKRNVRRWVKEREAMSGVLLTRILELLKRA*
Ga0132256_1000216266	3300015372	Arabidopsis Rhizosphere	MALNLFAKLFISERRNNMRQVERQQLIELGILTPDCDPRISPSQKVSPERKRNVRRWVKEREAMSGVLLTRILELLKRA*
Ga0134069_10757281	3300017654	Grasslands Soil	NMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVIRWVKEREAMSGVLLTRILERLKRA
Ga0134069_11384451	3300017654	Grasslands Soil	IELGILTPDCDPRITTSQKVSPERKRNVRRLVKEREAMSGVLLTRILERLKRA
Ga0184617_10015893	3300018066	Groundwater Sediment	MRQVEREQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILECLKRA
Ga0184640_103277222	3300018074	Groundwater Sediment	MRQVEREQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTGILECLKRA
Ga0066662_100131704	3300018468	Grasslands Soil	MRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKELKKGPASS
Ga0066662_102187184	3300018468	Grasslands Soil	AKLFLSERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKRA
Ga0066669_107435941	3300018482	Grasslands Soil	AKLFLSERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSSERKRNVRRWVKEREAMSGVLLTRILERLKRA
Ga0066669_123187381	3300018482	Grasslands Soil	VERQQLIELGILTPDCDPRITTSQKVSPERKRNVIRWVKEREAMSGVLLTRILERLKRA
Ga0173482_100878752	3300019361	Soil	MRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVFLARILERLKRA
Ga0137408_12835073	3300019789	Vadose Zone Soil	MRQVERQRLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKRA
Ga0179594_103046141	3300020170	Vadose Zone Soil	MRQVEREQLIELGILTPDCDPRMTTSQKVSQERKRNVRRWVKEREAMSGVFLTRILERLKRA
Ga0207697_100058905	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MRQVERQQLIELGILTPDCDPRISTSQRVSPEVKRNVRRWVKEREAMSGVLLTRILELLKRA
Ga0209468_10038988	3300026306	Soil	MRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVIRWVKEREAMSGVLLTRILERLKRA
Ga0209468_10198445	3300026306	Soil	MRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKRA
Ga0209469_10141751	3300026307	Soil	MRQVERQQLIELGILTPDCDPRITTSQKVSSERKRNVRRWVKEREAMSGVLLTRILERLKRA
Ga0209268_10465111	3300026314	Soil	ELGILTPDCDPRITTSQKVSSERKRNVRRWVKEREAMSGVLLTRILERLKRA
Ga0209266_12665832	3300026327	Soil	NNGINSFAKLFLSERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKRA
Ga0209473_13064381	3300026330	Soil	NIRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKRA
Ga0209804_12875491	3300026335	Soil	MRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKEL
Ga0257171_10528891	3300026377	Soil	FLSERRSNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLARILECLKRA
Ga0257156_10219112	3300026498	Soil	MRQVERQQLIELGILTPDCDPRITTSQKVSPEHKRNVRRWVKEREAMSGVLLSRILERLKRA
Ga0209690_10364466	3300026524	Soil	MRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLK
Ga0209474_107110351	3300026550	Soil	LFLSERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKRA
Ga0207540_1062811	3300027385	Soil	RGWVFVPFFCHNNGINLSAKLFLSERRNSMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVFLARILERLKRA
Ga0207624_1037862	3300027453	Soil	MRQVERQQLIELGILTPDCDRRITTSQKVSPERKRNLRRWVKEREAMSGVLLTRILERLKEI
Ga0307305_101279971	3300028807	Soil	INLFAKLFLSERRNNLRQVEREQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILECLKRA
Ga0075377_117720411	3300030844	Soil	FAKLFLSERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKRA
Ga0075386_100363981	3300030916	Soil	WVFVPFFCHNNGINLFAKLFLSERRSNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKRA
Ga0075382_117799512	3300030917	Soil	MRQVEREQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKRA
Ga0075394_120661861	3300030969	Soil	RTLRGWVFVPFFCHNNGINLFAKLFLSERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRMLELLKRA
Ga0307498_100974821	3300031170	Soil	MRQVEREQLIELGILTPDCDPRIATSQKVSPERKRNVRRWVKEREAMSGVFLTRILERLK
Ga0170824_1042330711	3300031231	Forest Soil	NGINSFAKLFLSERRNNMRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRMLELLKRA
Ga0170824_1060440141	3300031231	Forest Soil	CHNNGINLFAKLFLSERRNNMRQVEREQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVFLTRILERLKRA
Ga0170824_1142318591	3300031231	Forest Soil	NGINSFAKLFLSERRNNMRQVERQQLIELGILTPDCDPRIITSQKVSPERKRNVRRWVKEREAMSGALLTRILERLKRA
Ga0170824_1193681332	3300031231	Forest Soil	MTQVEREQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVNEREAMSGVFLTRILERLKKA
Ga0307475_100760042	3300031754	Hardwood Forest Soil	MRQVERQQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVLLTRILERLKELKKGRPSS
Ga0310884_110758413	3300031944	Soil	LSERRNNMRQVEREQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGVFLTRILERLKRA
Ga0310906_104728052	3300032013	Soil	MRQVEREQLIELGILTPDCDPRITTSQKVSPERKRNVRRWVKEREAMSGALLTRILERLKRA
Ga0307471_1039354892	3300032180	Hardwood Forest Soil	NGINLSAKLFLSKRRNSMRQVERQQLIELGILTPDCDPRITTSQKVSPERKQNVRRWVKEREAMSGVLLTRILERLKRA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097928

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences