Metagenome / Metatranscriptome Family F097876

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097876
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	105 residues
Representative Sequence	MLQPRTVELKRAKQGAKPAARAGFELERRPAVWARRARVEKGIDLLVEEVSLEGAEELFGLGQTQPEMLDALVVLVEGDDIGDGFFITLIVTHDELQFDTHTGASPGSSDR
Number of Associated Samples	81
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	23.30 %
% of genes near scaffold ends (potentially truncated)	51.92 %
% of genes from short scaffolds (< 2000 bps)	89.42 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.308 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (33.654 % of family members)
Environment Ontology (ENVO)	Unclassified (40.385 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.76% β-sheet: 32.37% Coil/Unstructured: 61.87%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13614	AAA_31	1.92
PF13374	TPR_10	1.92
PF13808	DDE_Tnp_1_assoc	1.92
PF13358	DDE_3	1.92
PF00106	adh_short	0.96
PF01642	MM_CoA_mutase	0.96
PF00805	Pentapeptide	0.96
PF04754	Transposase_31	0.96
PF04392	ABC_sub_bind	0.96
PF00881	Nitroreductase	0.96
PF07883	Cupin_2	0.96
PF02781	G6PD_C	0.96
PF01734	Patatin	0.96
PF00856	SET	0.96
PF01747	ATP-sulfurylase	0.96
PF02518	HATPase_c	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.96
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.96
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.96
COG1884	Methylmalonyl-CoA mutase, N-terminal domain/subunit	Lipid transport and metabolism [I]	0.96
COG2046	ATP sulfurylase (sulfate adenylyltransferase)	Inorganic ion transport and metabolism [P]	0.96
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.96
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.96
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.96
COG5464	Recombination-promoting DNA endonuclease RpnC/YadD	Replication, recombination and repair [L]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.31 %
Unclassified	root	N/A	7.69 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	57.69 %
Unclassified	root	N/A	7.69 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.69 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	5.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
bacterium SCN 62-11	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCN 62-11	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.69 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	5.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
bacterium SCN 62-11	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCN 62-11	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.69 %
unclassified Cyanobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria	5.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
bacterium SCN 62-11	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCN 62-11	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.69 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	5.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
bacterium SCN 62-11	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCN 62-11	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004463\|Ga0063356_106168930	All Organisms → cellular organisms → Bacteria → Terrabacteria group	514	Open in IMG/M
3300004633\|Ga0066395_10478236	All Organisms → cellular organisms → Bacteria → Terrabacteria group	714	Open in IMG/M
3300005167\|Ga0066672_10840037	All Organisms → cellular organisms → Bacteria → Terrabacteria group	574	Open in IMG/M
3300005295\|Ga0065707_10338921	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300005340\|Ga0070689_101030419	Not Available	733	Open in IMG/M
3300005347\|Ga0070668_100981401	All Organisms → cellular organisms → Bacteria → Terrabacteria group	758	Open in IMG/M
3300005563\|Ga0068855_101758142	All Organisms → cellular organisms → Bacteria → Terrabacteria group	631	Open in IMG/M
3300005617\|Ga0068859_102325363	All Organisms → cellular organisms → Bacteria → Terrabacteria group	591	Open in IMG/M
3300006032\|Ga0066696_10946009	Not Available	548	Open in IMG/M
3300006173\|Ga0070716_101432805	All Organisms → cellular organisms → Bacteria → Terrabacteria group	563	Open in IMG/M
3300006800\|Ga0066660_11646015	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300006844\|Ga0075428_100107902	All Organisms → cellular organisms → Bacteria	3034	Open in IMG/M
3300007255\|Ga0099791_10254265	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300007265\|Ga0099794_10321612	All Organisms → cellular organisms → Bacteria → Terrabacteria group	803	Open in IMG/M
3300009038\|Ga0099829_11474772	All Organisms → cellular organisms → Bacteria → Terrabacteria group	562	Open in IMG/M
3300009090\|Ga0099827_10841520	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300009090\|Ga0099827_11059214	All Organisms → cellular organisms → Bacteria → Terrabacteria group	704	Open in IMG/M
3300009090\|Ga0099827_11563312	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300009143\|Ga0099792_10224816	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1080	Open in IMG/M
3300009147\|Ga0114129_10774354	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300009156\|Ga0111538_10144731	All Organisms → cellular organisms → Bacteria	3019	Open in IMG/M
3300009553\|Ga0105249_11741558	All Organisms → cellular organisms → Bacteria → Terrabacteria group	696	Open in IMG/M
3300009553\|Ga0105249_11919181	Not Available	665	Open in IMG/M
3300009792\|Ga0126374_11715855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	522	Open in IMG/M
3300009809\|Ga0105089_1035604	All Organisms → cellular organisms → Bacteria → Terrabacteria group	727	Open in IMG/M
3300009816\|Ga0105076_1097434	Not Available	568	Open in IMG/M
3300009837\|Ga0105058_1087075	All Organisms → cellular organisms → Bacteria → Terrabacteria group	724	Open in IMG/M
3300010040\|Ga0126308_11238824	All Organisms → cellular organisms → Bacteria → Terrabacteria group	529	Open in IMG/M
3300010042\|Ga0126314_11250580	Not Available	555	Open in IMG/M
3300010043\|Ga0126380_10045323	All Organisms → cellular organisms → Bacteria → Proteobacteria	2338	Open in IMG/M
3300010046\|Ga0126384_10080927	All Organisms → cellular organisms → Bacteria → Proteobacteria	2340	Open in IMG/M
3300010047\|Ga0126382_11477547	All Organisms → cellular organisms → Bacteria → Terrabacteria group	624	Open in IMG/M
3300010329\|Ga0134111_10531448	All Organisms → cellular organisms → Bacteria → Terrabacteria group	519	Open in IMG/M
3300010358\|Ga0126370_10168317	All Organisms → cellular organisms → Bacteria	1619	Open in IMG/M
3300010358\|Ga0126370_12262022	All Organisms → cellular organisms → Bacteria → Terrabacteria group	537	Open in IMG/M
3300010359\|Ga0126376_11169416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	782	Open in IMG/M
3300010360\|Ga0126372_13032165	All Organisms → cellular organisms → Bacteria → Terrabacteria group	521	Open in IMG/M
3300010361\|Ga0126378_10988727	All Organisms → cellular organisms → Bacteria → Terrabacteria group	945	Open in IMG/M
3300010362\|Ga0126377_10104291	All Organisms → cellular organisms → Bacteria	2592	Open in IMG/M
3300010366\|Ga0126379_10657816	All Organisms → cellular organisms → Bacteria	1138	Open in IMG/M
3300010366\|Ga0126379_12973902	All Organisms → cellular organisms → Bacteria → Terrabacteria group	567	Open in IMG/M
3300010398\|Ga0126383_10966775	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300010398\|Ga0126383_11768458	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300010400\|Ga0134122_13274727	All Organisms → cellular organisms → Bacteria → Terrabacteria group	508	Open in IMG/M
3300011270\|Ga0137391_10332087	All Organisms → cellular organisms → Bacteria	1308	Open in IMG/M
3300012202\|Ga0137363_10357128	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300012202\|Ga0137363_11496424	All Organisms → cellular organisms → Bacteria → Terrabacteria group	566	Open in IMG/M
3300012203\|Ga0137399_11499253	All Organisms → cellular organisms → Bacteria → Terrabacteria group	561	Open in IMG/M
3300012205\|Ga0137362_10463290	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCN 62-11	1097	Open in IMG/M
3300012207\|Ga0137381_10623520	All Organisms → cellular organisms → Bacteria → Terrabacteria group	939	Open in IMG/M
3300012209\|Ga0137379_11223466	All Organisms → cellular organisms → Bacteria → Terrabacteria group	658	Open in IMG/M
3300012349\|Ga0137387_10150799	All Organisms → cellular organisms → Bacteria	1655	Open in IMG/M
3300012351\|Ga0137386_10496716	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300012356\|Ga0137371_11119698	All Organisms → cellular organisms → Bacteria → Terrabacteria group	591	Open in IMG/M
3300012356\|Ga0137371_11316126	All Organisms → cellular organisms → Bacteria → Terrabacteria group	534	Open in IMG/M
3300012362\|Ga0137361_10449492	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1183	Open in IMG/M
3300012363\|Ga0137390_10107452	All Organisms → cellular organisms → Bacteria	2759	Open in IMG/M
3300012363\|Ga0137390_10696268	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300012363\|Ga0137390_11525524	All Organisms → cellular organisms → Bacteria → Terrabacteria group	608	Open in IMG/M
3300012685\|Ga0137397_10306623	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1183	Open in IMG/M
3300012685\|Ga0137397_11081662	All Organisms → cellular organisms → Bacteria → Terrabacteria group	585	Open in IMG/M
3300012925\|Ga0137419_10238317	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1365	Open in IMG/M
3300012925\|Ga0137419_11809296	All Organisms → cellular organisms → Bacteria → Terrabacteria group	523	Open in IMG/M
3300012927\|Ga0137416_10208546	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1572	Open in IMG/M
3300012927\|Ga0137416_10277358	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1380	Open in IMG/M
3300012927\|Ga0137416_10996929	All Organisms → cellular organisms → Bacteria → Terrabacteria group	748	Open in IMG/M
3300012930\|Ga0137407_10188172	All Organisms → cellular organisms → Bacteria	1846	Open in IMG/M
3300012948\|Ga0126375_10939447	All Organisms → cellular organisms → Bacteria → Terrabacteria group	699	Open in IMG/M
3300012948\|Ga0126375_11142429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	644	Open in IMG/M
3300012948\|Ga0126375_11669815	All Organisms → cellular organisms → Bacteria → Terrabacteria group	551	Open in IMG/M
3300012971\|Ga0126369_10157195	All Organisms → cellular organisms → Bacteria	2145	Open in IMG/M
3300012971\|Ga0126369_10408472	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1397	Open in IMG/M
3300012977\|Ga0134087_10333208	All Organisms → cellular organisms → Bacteria → Terrabacteria group	720	Open in IMG/M
3300015241\|Ga0137418_10120441	All Organisms → cellular organisms → Bacteria	2340	Open in IMG/M
3300015264\|Ga0137403_10291004	All Organisms → cellular organisms → Bacteria	1531	Open in IMG/M
3300016270\|Ga0182036_10758707	All Organisms → cellular organisms → Bacteria → Terrabacteria group	788	Open in IMG/M
3300016341\|Ga0182035_11344227	All Organisms → cellular organisms → Bacteria → Terrabacteria group	640	Open in IMG/M
3300017792\|Ga0163161_10161219	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1710	Open in IMG/M
3300017792\|Ga0163161_11633648	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300017792\|Ga0163161_11776439	All Organisms → cellular organisms → Bacteria → Terrabacteria group	548	Open in IMG/M
3300021080\|Ga0210382_10538024	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300021560\|Ga0126371_12634171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	609	Open in IMG/M
3300025939\|Ga0207665_10701515	All Organisms → cellular organisms → Bacteria → Terrabacteria group	796	Open in IMG/M
3300027490\|Ga0209899_1027710	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300027490\|Ga0209899_1070440	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300027511\|Ga0209843_1004464	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3274	Open in IMG/M
3300027655\|Ga0209388_1109749	All Organisms → cellular organisms → Bacteria → Terrabacteria group	789	Open in IMG/M
3300027954\|Ga0209859_1047179	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300027961\|Ga0209853_1109767	Not Available	693	Open in IMG/M
3300028536\|Ga0137415_10089625	All Organisms → cellular organisms → Bacteria	2933	Open in IMG/M
3300028536\|Ga0137415_10439629	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1110	Open in IMG/M
3300030551\|Ga0247638_1168611	All Organisms → cellular organisms → Bacteria → Terrabacteria group	542	Open in IMG/M
3300030829\|Ga0308203_1050791	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300031054\|Ga0102746_10845855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	541	Open in IMG/M
3300031058\|Ga0308189_10451923	All Organisms → cellular organisms → Bacteria → Terrabacteria group	543	Open in IMG/M
3300031421\|Ga0308194_10274769	Not Available	574	Open in IMG/M
3300031890\|Ga0306925_11866609	All Organisms → cellular organisms → Bacteria → Terrabacteria group	573	Open in IMG/M
3300031912\|Ga0306921_11600994	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300033551\|Ga0247830_10879988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	713	Open in IMG/M
3300034479\|Ga0314785_013012	All Organisms → cellular organisms → Bacteria → Terrabacteria group	622	Open in IMG/M
3300034662\|Ga0314783_155959	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300034667\|Ga0314792_110041	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300034667\|Ga0314792_262080	All Organisms → cellular organisms → Bacteria → Terrabacteria group	508	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.46%
Host-Associated	Host-Associated	11.54%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.50%
Plants	Host-Associated → Plants	11.54%
Aquatic	Environmental → Aquatic	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.77%
Freshwater	Environmental → Aquatic → Freshwater	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.96%
Sand	Environmental → Terrestrial → Soil → Sand	7.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.81%
Loam	Environmental → Terrestrial → Soil → Loam	3.85%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	62.50%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	7.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.77%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	33.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	19.23%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.88%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009809	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027511	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027954	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027961	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030551	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb3 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031054	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 1C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034479	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034662	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034667	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0063356_1061689301	3300004463	Arabidopsis Thaliana Rhizosphere	MLQPRTVELKRAKQGAKRAPRASFQVQRRPAVWAIRARVEKGGDLLLEEVPLQSAKEVCGLRQGQPEMLDALIVLVEGDEICDGLFITLIVIYDELQFDTHMGASPGSSDRIAQAILPEFSYPQHLPA
Ga0066395_104782361	3300004633	Tropical Forest Soil	MLQPWTGERKRAKQGAKRAAAPGLELERRPAVRTGRTSVEKGGDLLLEEVPLEGAEELFGLGQGQPEMLDALMVLVEDDDSGDSLFITLIVIHDELQFDTHTGASPGSSDR*
Ga0066672_108400371	3300005167	Soil	MFKPRAAQLKRPKQGAKRAIRTGLELERRPTVWTRRARIEKGVNLLLEAVSLEGAEELFGLCQGQPEMLDASVVLVEGDHIGDGLFLTLIAAHDELKFDTHTGTLRV*
Ga0065707_103389212	3300005295	Switchgrass Rhizosphere	FQVQRRPAVRAIRARVEKGGDLLLKEVLLQGAEEVFGLRQGQPEMLDALMVLVKGDDIGDGLFITLIVTHDELHFDTHTGASPGSSDRGIAQAILPEF*
Ga0065707_105553012	3300005295	Switchgrass Rhizosphere	MPGAIAMLQPRAVKGESAKQSTKRSARVGFHLEQGATGRTREARVEKGLNLVLKQVSLQGAEELFGLCQGQPEMLDALMVLVEGEDIGDGLFITLIVTQDELQFEAHTGASPGSSDR*
Ga0070689_1010304191	3300005340	Switchgrass Rhizosphere	MFKPRTVALKHAKQGAKRSAAMGLDLERRPAVWTSRMRVEKGSDLLLEEVLLQGAKKVFGLRQGQPEMLDALMVLVESDDIGDGLFITLVVIDDKLQFDTHTGASPGSSDKLAQAILPEFWRHPQHLPALVVGPQTQ
Ga0070668_1009814011	3300005347	Switchgrass Rhizosphere	MGLDLERRPAVWTSRIRVEKGIDLLLEEVLLQGAEKVFGLGQSQPEMLEALMVLGEGEDIGDGLFLTLVVTDDKLQFDTHTWASPGSSDR*
Ga0068855_1017581421	3300005563	Corn Rhizosphere	GAEQGAQRAAAVGLELERCPAVRARRARVEKGVNLLLEEVALEGAEQLFGLGQGQSEMFDALVVLVEGDDIGDGLFMTVIVTNDELQFDTHTGVSPGSSDR*
Ga0068859_1023253631	3300005617	Switchgrass Rhizosphere	ERKGAEQGAKQSAAVGLELERRAAVQARRMRVKKGADLLLEEVLLEGTEEVFGLSQSQPEMLDALVVLGEGKDIGDGFFLTVIVTDDELQFDAHSRASPGSSGR*
Ga0066696_109460091	3300006032	Soil	PKRRGFVRFAVTRLQPRTLERKGAEPGAKRAAAMGLELERRAAVRARRMGAEKGVDWLLEEVALDGAQELLRFGQTQPEMLKALVVFIESADIRNGFFLTIIVTNAELQFDAHSRASLGLSGR*
Ga0070716_1014328051	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	AQLRRPKQGAQRATRTGLERERRPTVWTRRARIEKGVNLLLEEVVLEGAEELCGLGQAQPEMLDALMVLIEGDDIGDGLFITLIVTHDALQFDTHTGASLGSSDR*
Ga0066660_116460151	3300006800	Soil	QPRTVERKRAKQGAKRAPRAGFQVQRRPAVRAIRARVEKGVDLLLEEVPLQGAEEVFGLRQSQPEMLDALMVLVEGDDIGDGLFITLIITHDKLQFEAHTGASPGSSDR*
Ga0075428_1001079022	3300006844	Populus Rhizosphere	MRTGLELERRPTVWTCRARIEKGVNLLLEEVALEGAEELFGLCQGQPEMLDASVVLVEGDHIGDDLFSTLIVTHDELQFDTHMGLLRVRVTGE*
Ga0099791_102542652	3300007255	Vadose Zone Soil	MIEPWTVELKGAEQGAKRPAAVGLELKRRATVWARCMGVEKGGELLLEEVVLEGTQELFGFGQTQPEMLNVLVVRVEGDDIGDGLFPTIIVTDDELQFDAHRRASPDSSDR*
Ga0099794_103216121	3300007265	Vadose Zone Soil	MRTGLELERRPTVWTRRARIEKGVNLLLEEVSLEGAEELFGLCQGQPEMLDASVVLVEGDHIGDGLFLTLIAAHDELKFDTHTGTLRV*
Ga0099829_114747721	3300009038	Vadose Zone Soil	RTVELKGTKQSAKRAAAVGLERERRAAVRARRMRVEKSVDLLLEEVSLEGAKELFGLGQTQPEMLDALVVLVEGDDIGDGFFMTVIVTNDELQFDAHREASPGSSDR*
Ga0099827_108415201	3300009090	Vadose Zone Soil	MIEPWTVELKGAEQGAKRPAAVGLELKRRATVWARCMGVEKGGELLLEEVALEGTQELFGFGQTQPEMLNALVVFIEGHDIGNSFFLTIIVTNDALQFDAHNRASPGLSSRERVRVILF
Ga0099827_110592141	3300009090	Vadose Zone Soil	MLQPRTVELKRAKQGAKPAARAGFELERRPAVWARRARVEKGIDLLVEEVSLEGAEELFGLGQTQPEMLDALVVLVEGDDIGDGFFITLIVTHNELQFDMHTGASPGSSDR*
Ga0099827_115633122	3300009090	Vadose Zone Soil	KGAEQGAKRAAAAGLELEGCAAVRARRMRVEKGVNLLLEEVSLEGAEKLFALGQGQPEMLDALMALVEGDDIGDSLFITLIVTHDEL*
Ga0099792_102248161	3300009143	Vadose Zone Soil	MRTGLELERRPTVWTRRARIEKGVNLLLEEVSLEGAEELFGLCQGQPEMLDASVVLVEGDHIGDGLFLTLIAAHDELKFDTHTGTLRV
Ga0114129_107743541	3300009147	Populus Rhizosphere	RTIDLKGAEQGAKRAAAAGLKLEGCAAVRARRMRVEKGVNLLLEEVSLEGAEKLFGLGQGQPEMLDALMVLIEGNDIGDSLFITLIVTHDEL*
Ga0111538_101447312	3300009156	Populus Rhizosphere	MRTGLELERRPTVWTCRARIEKGVNLLLEEVALEGAEELFGLCQGQPEMLDASVVLVEGDHIGDDLFSTLIVTHDELQFDTHMGASPGSSDR*
Ga0105249_117415581	3300009553	Switchgrass Rhizosphere	MIEPWTVELKGAEQGAKRPAAVGLELKRRATVWARCMGVEKGGELLLEEVALEGTQELFGFGQTQPEMLNALVVLVEGDDIGDGLFLTIIVTDDELQFDTHTVASPG
Ga0105249_119191811	3300009553	Switchgrass Rhizosphere	PRTVALKRAKQGAKRSAAMGLDLERRPAGWTSRIRVEKGIDLLLEEVLLQGAEKVFGLGQSQPEMLEALMVLGEGEDIGDGLFLTLVVTDDKLQFDTHTWASPGSSDR*
Ga0126374_117158551	3300009792	Tropical Forest Soil	LKRAKQGAKRPAGVGLELERRPAVPARRTHVKKGGDLLLEEMPLEGAEEVFGLGEGQPEMLNALMVLVEGEDIGDGLFLTLIITHDELQFEAHTGASPGSSDR*
Ga0105089_10356042	3300009809	Groundwater Sand	MLQPRAVELKRAKQGAKPAARAGFELERRPAVWARRARVEKGIDLLLEEVSLEGAEELFGLGQAQPEMLDAVVVLVEGDDIGDGFFITLIVTNDELQFDTHTGASPGSSDR*
Ga0105076_10974341	3300009816	Groundwater Sand	ELARAKQGAKRAARAGFQVQRRPAVRAIRVRVEKSVDLLLEEVLLQGAEELFGLWQSQPEMLDVLIILVEGDDVGDGLFIPLLVTNDELQFDTHTGASPGSRDRSIAQAILPEFGSDPQHLPALSRRRHILSG*
Ga0105058_10870752	3300009837	Groundwater Sand	MLQPRTVALKRAKQGAKPAVSAGFELEWRPAVWARRARVEQGIDLLLEEVSLEGAEELCGLGQAQPEMLDALVVLVEGDDIGDGFFITLIVTHDELQFDTHTGASPSSSDR*
Ga0126308_112388241	3300010040	Serpentine Soil	MLQPRTVELKRAKQGAKPAARVDFELERRPAVWARRARVEKGIDLLLEEVALEGAEELFGLGQAQPEMLDALVVLVKGDDIGDGFFITLIITHDE
Ga0126314_112505802	3300010042	Serpentine Soil	VATGLELERRAAVRARRMGVEKGGDLLLEEVPLEGAEELFGLSQRQPKMLDALVVLGERDDIGDGLLVTVIMRDDELQCDAHKRVSPGASDECIAQVILSEF*
Ga0126380_100453234	3300010043	Tropical Forest Soil	MRTGLELERCPTVWTRCARIEKGVNLLLEEVSLEGAEKVFGLGQGQPEMLDALVLFVEGEDIGDDLVLTLIVTYDELQFDTHRGASPGSSSR*
Ga0126384_100809275	3300010046	Tropical Forest Soil	MFKPRAAQLKRPKQGEKRAMRTGLELERRPTVWTRRARIEKGVNLLLEEVALEGAEKGFGLGQGQLEMLDALVLFVEGDDIGDRFFITLIVTHDELQFDTHRGASPGSSGRGRK*
Ga0126382_114775471	3300010047	Tropical Forest Soil	MIEPWTVKLKGAEQGAKRPAAVGLELKRRATVWARCMGVEKGGELLLEEVALEGTQELCGFGQTQPEMLNALVVLVEGDDIGDGLFPTIIVTDDELQLDAHRRASPGSSDR*
Ga0134111_105314481	3300010329	Grasslands Soil	MFKPRAEQLKRPKQGAKRAMRTGLELERRPAVPARRTHVEKGGDLLLVEMPLEGAEELFGLGEGQPEMLDALMVLVEGEDIGDGLFITLIITHDELQFDTHTGASPGSSDR*
Ga0126370_101683173	3300010358	Tropical Forest Soil	GERKRAKQGAKRAPRVGFQVQRRPAIRAIRARVEKGVDLLLEEVLLQGAEEVCGLRQGQPEMLDALMVLVEGDDIGDGLFLTLIVIHDEW*
Ga0126370_122620221	3300010358	Tropical Forest Soil	KQGAKRAARAGFQVQRRPAVRAIRARVEKGINLLLEEVLLEGAEELFGLREGQPEMLDALMALVEGEDIGNGLFLTLIVTHDELQFDTHRGASPGSSDR*
Ga0126376_111694162	3300010359	Tropical Forest Soil	MLQPRTVELNRTKQGAKRAPSVGFQVQRRPAVRALRARIEKGGDLLLEEVPLQGAEEVFGLRQGQPEMLDALIVLVEGEDIGDGLFLTLIVTHDTLQFDTHTGASPG
Ga0126372_130321651	3300010360	Tropical Forest Soil	VTMFSPRTLERKGAKQGAKRAAAVGLELEWRGTVRARRMGVEKGVDLLLEDVVLEGAQELLRFGQTQPEMLNPLVVFIEGDDIGNSFFLTIIVTNDELQFDAHSRASPGLSGR*
Ga0126378_109887271	3300010361	Tropical Forest Soil	MKLKGAEQGAKRSAAVGLELERRAAIQARRMRVKKGADLLLEEALLEGTEELFGLSQSQPEMLDALVVLVEGKDIGDGFFLTVIVTDDELQFDA
Ga0126377_101042914	3300010362	Tropical Forest Soil	MFKPRAVELKRAKQGAKREMRTGLELERRPTVWTRRARIEKGVNLLVEEMSLEGAEQVFGLGQGQPEMLNALVLFVEGEDISDGFFITLIVTNDEL*
Ga0126379_106578162	3300010366	Tropical Forest Soil	MRTGLELERRPTIWTRRARIEKGVNLLLEEVSLEGAEELFGLCQGQPEMLDASVVLVEGDHISDGLFMTLIAAHDELKFDTHTGTLRVRVADE*
Ga0126379_129739021	3300010366	Tropical Forest Soil	RFAPLAVAMFQPRAAQLKRAKQGAKRAMRTGLELERCPTVWTRCARIEKGVNLLVEEVSLEGAEKVFGLGQGQPEMLDALVLFVEGDDIGDDLVLTLIVTYDELQFDTHRRASPGSSGR*
Ga0126383_109667751	3300010398	Tropical Forest Soil	TKQGAKRAPSVGFQVQRRPAVRAIRARIEKGGDLLLEEVPLEGAEELFGLGQGQPEMLDALMVLVEGHDIGDGLFLTLIVTHDELQFDTHTEASPGSSDR*
Ga0126383_117684582	3300010398	Tropical Forest Soil	LVPGAVAMLQPRTVERKRAKQGAKRAPRVGFQVQRRPAIRAIRARIEKGVDLLLEEVLLQGTKELFGLGQSQPEMLDALMVLVEGDDIGDGLFITLIITQDELQFDTHTGASPGSSDR*
Ga0134122_132747271	3300010400	Terrestrial Soil	MLEPRTLERKGAEQGAKQSAAVGLELERRAAIQARRMRVKKGADLLLEEVLLEGTEEVFGLSQSQPEMLDALVVLGEGKDIGDGFFLTVIVTDDELQFDAHSRASPGSSGR*
Ga0137391_103320872	3300011270	Vadose Zone Soil	MRTGLELERRPTVWTRRARIEKGVNLLLEEVSLEGAEELFGLGQGQPEMLDASVVLVEGDHIGDGLFLTLIAAHDELKFDTHTGTLRV*
Ga0137363_103571282	3300012202	Vadose Zone Soil	MIEPWTVELKGAEQGAKRPAAVGLELKRRATVWARCMGVEKGGELLWEEVVLEGTQELFGFGQTQPEMLNVLVVRVEGDDIGDGLFPTIIVTDDELQFDAHRRASPDSSDR*
Ga0137363_114964241	3300012202	Vadose Zone Soil	MLQPRTVELKRAKQGAKPAARAGFELERRPAVWARRARVEKGIDLLVEEVSLEGAEELFGLGQAQPEMLDALVVLVEGDDIGDGFFVTVIVTDDELQFDTHTGASPGSSDR*
Ga0137399_114992531	3300012203	Vadose Zone Soil	MLQPRTVELKCAKQGAKPAASAGFELERRPAVWARRARVKKGIDLLVEEVALEGAEELFGLGQAQPEMLDALVVLVEGDDIGDGFFVTVIVTDNELQFDAHSRTSPGSCGK*
Ga0137362_104632901	3300012205	Vadose Zone Soil	RRARIEKGVNLLLEEVSLEGAEELFGPCQGQPEMLDASVVLVEGDHIGDGLFLTLIAAHDELKFDTHTGTLRV*
Ga0137381_106235201	3300012207	Vadose Zone Soil	MRLELKRRTIIWTHRARVEKRVDLSLEEAVLGGAEELFGLGQGQPEMLDASVVFVEGDDIGDGLFMTLIITDDKL*
Ga0137379_112234661	3300012209	Vadose Zone Soil	RTVELQRAKQGAKRAPRAGFQVQRRPAVRAIRARVEKSGDVLVEEVPLQGAAEVFGLRQGQPEMLDALMVLVEGDEIGDGLCITLIVTQDEWQFDTHTGASPGSSDR*
Ga0137387_101507993	3300012349	Vadose Zone Soil	MPTGLELEWRLTVWTRRARIEKGVNLLLEEVSLEGAEELFGLCQGQPEMLDASVILVEGDHIGDGLFLTLIAAHDELKFDTHTGSLRV*
Ga0137386_104967161	3300012351	Vadose Zone Soil	MFKPRAAQLKRPKQGAKRAIRTGLELERRPTVWTRRARIEKGVNLLLEEVSLEGAEELFGLCQGQPEMLDASVILVEGDHIGDGLFLTLIAAHDELKFDTHTGSLRV*
Ga0137371_111196982	3300012356	Vadose Zone Soil	MRLELQRRTIIWTHRARVEKRVDLSLEEAVLGGAEELFGLGQGQPEMLDASVVFVEGDDIGDDLFMALIVTDDKL*
Ga0137371_113161262	3300012356	Vadose Zone Soil	MLQPRTLELKGAEQGAKRAAAMGLELERRATVRARRMGVEKGVDLLLEEVALEGAQELLRFGQTQPEMLNPLVVFIEGDDIGNGFFLTIIVTNDELQFDAH
Ga0137361_104494922	3300012362	Vadose Zone Soil	MLQPRTVELKRAKQGAKRPTGVGLELERRPAVPARRTHVEKGGDLLLEEMPLEGAEELFGLGEGQPEMLDALMVLVEGEDIGDGLFITLIMTHDELQFEAHTGASPGSSDR*
Ga0137390_101074523	3300012363	Vadose Zone Soil	MLQPRTVELKRAKQGAKPAARAGFELERRPAVWARRARVEKGIDLLVEEVSLEGAEELFGLGQTQPEMLDALVVLVEGDDIGDGFFITLIVTHDELQFDTHTGASPGSSDR*
Ga0137390_106962681	3300012363	Vadose Zone Soil	MKLKGAEQGAKRSAAVGLECERRTAVWARCMGVEKGGELLLEEVVLEGTQELFGFGQTQPEMLNVLVVRVEGDDIGDGLFPTIIVTDDELQFDAHSRASPDSSDR
Ga0137390_115255241	3300012363	Vadose Zone Soil	MRTGLELERRPTVWTRRARIEKGVNLLLEEVSLEGAEELFGLCQGQPEMLDASVVLVEGDHIGDGLFLTLIAAQDELKFDTHTGTLRV*
Ga0137397_103066231	3300012685	Vadose Zone Soil	MIEPWTVELKGAEQGAKRPAAVGLQLKRRATVWARCMGVEKGGELLLEEVALEGTQELFGFGQTQPEMLNVLVVRVEGDEIGDGLFPTIIVTDDELQFDAHRRASPDSSDR*
Ga0137397_110816621	3300012685	Vadose Zone Soil	MRTGLELERRPTVWTRRARIEKGVNLLLEEVSLEGAEELFGLCQGQPEMLDASVVLVEGDHIGDGLFLTLIAAHDEL
Ga0137419_102383171	3300012925	Vadose Zone Soil	MKLKGAEQGAKRSAAVGLECERRTAVWARCMGVEKGGELLLEEVVLEGTQELFGFGQTQPEMLNVLVVRVEGDDIGDGLFPTIIVTDDELQFDAHRRASPDSSDR*
Ga0137419_118092962	3300012925	Vadose Zone Soil	MLQPRTVELKRAKQGAKPAARAGFELERRPAVWARRARVKKGIDLLVEEVSLEGAEELFGLGQAQPEMLDALVVLVEGDDIGDGFFVTVIVTDDELQFDTHTGASPGSSDR*
Ga0137416_102085462	3300012927	Vadose Zone Soil	VGLERERRPAVRARRARVEKGVNLLLEEVALEGAKELFGLGQTQPEMLDALVVLGEGDDIGDGFFMTLIVTNDELQFDAHRGTSPGSSDK*
Ga0137416_102773581	3300012927	Vadose Zone Soil	MIEPWTVELQGAEQGAKRPAAVGLELKRRATVWARCMGVEKGGELLLEEVVLEGTQELFGFGQTQPEMLNVLVVRVEGDDIGDGLFPTIIVTDDELQFDAHTGVSPGSS
Ga0137416_109969292	3300012927	Vadose Zone Soil	MRTGLELERRPTVWSRRARIEKGVNLLLEEVSLEGAEELFGLCQGQPEMLDASVVLVEGDHIGDGLFLTLIAAHDELKFDMHTGTLRG*
Ga0137407_101881721	3300012930	Vadose Zone Soil	QPRTVELKRAKQGAKPAARAGFELERRPAVWARRARVEKGIDLLLEEVSLEGAEELFGLGQAQPEMLDALVVLVEGDDIGDGFFVTVIVADDELQFDTHTGASPGSSDR*
Ga0126375_109394471	3300012948	Tropical Forest Soil	MLQPRTVELKRAKQGAKPAARAGFELERRPAVWARRARVEKSIDLLLEEVSLEGAEQLFGLGQAEPEMFDALVILVEGDDIGDGFFITLIVTHDELQFDTHTGA
Ga0126375_111424292	3300012948	Tropical Forest Soil	MLQPRTGELTGAEQGAKRAAAVGLELERRTAVRARRVGVEKGGDLLLEEVALEGAEEVFGFGQTQPEMLNALVVLVEGDDIGDGLFVTVIVRNDEL*
Ga0126375_116698152	3300012948	Tropical Forest Soil	GLWAVTMFKPRAVELKGPKQRAERATAMSLHTQRRAAIRTRRIRVEKGVDLLLEEVVLEGAEELFGLGQGQPEMLDALRVLVQGNDIGDSLFMTFIVTDDELQFDAHRGASPGSNDR*
Ga0126369_101571951	3300012971	Tropical Forest Soil	MRTGLELERRPTVWTRRARIEKGVNLLLEEVSLEGAEELFGLCQGQPEMLDASVVLVEGDHIGDGLFMTLIAAHDELQFDTHMGASPGSSDR*
Ga0126369_104084722	3300012971	Tropical Forest Soil	MFQPRTVKLKRAKQGAKRPAGVGLALERRPAVPARRTHVKKGGDLLLEEMPLEGAEEVFGLGEGQPEMLNALMVLVEGEDIGDGLFLTLIITHDELQFEAHTGASPGSSDR*
Ga0134087_103332082	3300012977	Grasslands Soil	MLQPRTVELKRAKQGAKPAASAGFELERRPAVWARRARVEKGIDLLLEEVSLEGAEELFGLGQTQPEMLDALVVLVEGDDIGDGFFVTVIVTDDELQFDTHTGASPGSSDR*
Ga0137418_101204413	3300015241	Vadose Zone Soil	MKLKGAEQGAKRSAAVGLECERRTAVWARCMGVEKGGELLLEEVVLEGTQELFGFGQTQPEMLNVLVVRVEGDDIGDGLFPTIIVTDDELQFDAHSRASPGSCGK*
Ga0137403_102910043	3300015264	Vadose Zone Soil	VGLELERRPAVWARRARVKKGIDLLLEEVSLEGAEELFGLGQAQPEMLDALVVLVEGDDIGDGFFSTLIVTDDELQFDTHTGASPGSSDR*
Ga0182036_107587072	3300016270	Soil	VGLERERRPAVRARRARVEKGVNLLLEEVALEGAEQLCGLGQGQSEMFDALVVLVEGDDIGDGLFMTLIVTDDKL
Ga0182035_113442271	3300016341	Soil	GLAPCAVTILQPRTVELKRAKQGAKQAAATGLELERRPAVRTGRTRVEKGGDLLLEEMPLEGTEELFGLGEGQPEMLDALMVLVEGEDIGDGLFITLIITHDELQFEAHTGASPGSSDR
Ga0163161_101612192	3300017792	Switchgrass Rhizosphere	MLQPRPVELQGAEQGAKRTAAVGLELERCAAVRARRMGVEKGGELLLEEVALEGAEELFGFGQTQPEMFNALVVLGEGDDIGDGLFVTVIVRNDEL
Ga0163161_116336482	3300017792	Switchgrass Rhizosphere	CAVAMLPPRTVELKCAKQGAKRAPRAGFQGQRRPAVRAIRGRAEKGGDLLLEEVLLQGAEEVCGLRQSQPEMLDALMVLGEGEDIGDGLFLTLVVTDDKLQFDTHTWASPGSSDR
Ga0163161_117764391	3300017792	Switchgrass Rhizosphere	VQRRPAVRAIRARVEKGVDLLLEEVLLQGAEEVFGLRQGHPEMLDALMVLVEGDDIGDGLFITLIVTDDKLQFDTHTGASPGSSDRGIAQAILP
Ga0210382_105380241	3300021080	Groundwater Sediment	AMLQPRTGERTRAKQGAKRAASASFQGQRRPAVWAIRARVEKGVDLLLEEVPLQGAEELCGLRHGQPEMLDALMVLVEGDDIGDGFFVTIIVTDDELQFDAHTGASPGSSDR
Ga0126371_126341712	3300021560	Tropical Forest Soil	GEPGVTGAKQGAKRFVATGLELEWRAAVRARQMGIEKGGDLLLEYVPLEGAEELFGLGQRQPKMLDALVVLGERDDIGDGLFVTVIVRDDELQFDAHSRASPGSSDE
Ga0207665_107015151	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	AAQLRRPKQGAQRATRTGLERERRPTVWTRRARIEKGVNLLLEEVVLEGAEELCGLGQAQPEMLDALMVLIEGDDIGDGLFITLIVTHDALQFDTHTGASLGSSDR
Ga0209899_10277102	3300027490	Groundwater Sand	ELKRAKQGAKPAARAGFELERRPAVWARRARVEKGIDLLLEEVSLEGAEELFGLGQAQPEMLDAVVVLVEGDDIGDGFFITLIVTNDELQFDTHTGASPGSSDR
Ga0209899_10704402	3300027490	Groundwater Sand	VQRRPAVRAIRVRVEKSVDLLLEEVLLQGAEELFGLWQSQPEMLDVLIILVEGDDVGDGLFIPLLVTNDELQFDTHTGASPGSRDRSIAQAILPEF
Ga0209843_10044643	3300027511	Groundwater Sand	MLQPRAVELKRAKQGAKPAARAGFELERRPAVWARRARVEKGIDLLLEEVSLEGAEELFGLGQAQPEMLDAVVVLVEGDDIGDGFFITLIVTNDELQFDTHTGASPGSSDR
Ga0209388_11097491	3300027655	Vadose Zone Soil	RHGLALFAVTMIEPWTVELKGAEQGAKRPAAVGLELKRRATVWARCMGVEKGGELLLEEVALEGTQELFGFGQTQPEMLNALVVLVEGDDIGDGLFLTIIVTDDELQFDTHTVASPGLSG
Ga0209859_10471791	3300027954	Groundwater Sand	VAMVPPRTGELKRSKQGAKRAAGAGFELQRRPAVRAIRARVKKGVDLLPQQVTLGGAEKLFGLRQGQPEMLDALVILVEGDDIGDGFFVTLIVPNDELQFDTHTVASPGSSGR
Ga0209853_11097671	3300027961	Groundwater Sand	MLQPRTVELARAKHGAKRAARAGFQVQRRPAVRAIRVRVEKSVDLLLEEVLLQGAEELFGLWQSQPEMLDVLIILVEGDDVGDGLFIPLLVTNDELQFDTHTGASPGSRDRSIAQAILPEFGSDPQHLPALSRRRHILSG
Ga0137415_100896252	3300028536	Vadose Zone Soil	MRTGLELERRPTVWSRRARIEKGVNLLLEEVSLEGAEELFGLCQGQPEMLDASVVLVEGDHIGDGLFLTLIAAHDELKFDTHTGTLRV
Ga0137415_104396292	3300028536	Vadose Zone Soil	LIPSISMLSLELERRAAVRARRMRVEKSVDLLLEEVSLEGAKELFGLGQTQPEMLDALVVLVEGDDISDGFFMTVIVTHDELQFDAHREASPGSS
Ga0247638_11686112	3300030551	Soil	MCDAHRGTGTLAGKRRGSKGYGLVPGAVAMLQPRTVEPKRAKQGAKRAPRAGFQVQRRPAVRAIRARVEKGGDLLLEEVPLQGAEELFGLRQGQPEMLDALMVLVEGDDIGDGLFITLIVTHDELQFDTHTGLLRVRVTEE
Ga0308203_10507912	3300030829	Soil	AKGCGLVLCAVAMLQPRTVERIRAKQGAKRAAAVGLELERLPAVRARRMRVEKGVNLMLEEVSLEGAEKLFGLGQAYPEMFDALVILVEGDDIGDGFFVTVIVTDDELQFDAHTGASPGSSDR
Ga0102746_108458551	3300031054	Soil	AKQGAKRSAAVGLELERSAAVLARRGGIEKGVDLLLEEALLEGAEQLFGLGQGQPEMLDAVMVLVEGEDIGDGLFITLIITHDELQFEAHTGASPGSSDR
Ga0308189_104519231	3300031058	Soil	EQGAKRSAAVGLELERRPAVWTGRTRVKKGVDLLLEEVSLDGAEELFGLRQGQPEMLDALIVLVEGDEIGDGLFLTFIVTHDELQFDTHTGASPGSSDRCIAQAILPEFCSYPQHLPALV
Ga0308194_102747691	3300031421	Soil	SRAVTRLEPRTLNLQGAEQGAQRAVAVGLELERRPAVRARRARVEKGVNLLLEEVALEGAEQLFGLGQGQSEMFDALVVLVEGDDIGDGFFMTGIVTDDALQFDAPSRASPGSRGK
Ga0306925_118666091	3300031890	Soil	MFKPRAAQLKRPKQGEKRAMRTGLELERRPTVWTRRARIEKGVNLLLEEVALEGAEKGFGLGQGQLEMLDTLVLFVEGDDIGDRFFITLIVTHDELQFDTHRGASPGSSSR
Ga0306921_116009942	3300031912	Soil	PRTLERKGAKQGAKRVAAVGLEIERRPAVRARRMRVEKGVDLLLEEVPLEDAEELFGLGQGQPEMLEALMVLGEGDDIGDGLFMTFIMTDDELQFDTHTGASPGSSDR
Ga0247830_108799881	3300033551	Soil	VALAAAVLKPRTLSLAGVKQSAKHSAAVGLELERGTAVLARQGRIEQGVDVLLEEASLEGIEQLFGLGQGQPEMLDALVALVQGDDSGDSFFLTLIITDDKWQFD
Ga0314785_013012_127_462	3300034479	Soil	MLKPRARELKRAKQGAKRAPRAGFEVQRRPAVRAIRARVEKGGDLLLEEVPLQGAEELFGLRQGQPEMLDALIVLVKGDDIGDGLLVTVIVRDDELQFDAHNRASPGSSDE
Ga0314783_155959_26_361	3300034662	Soil	MLKPRTIALKRAKPGAKRPVSASLELERCAAVRAIRARVEKGIDLLLEEVSLQGAVKVFGLGQSQPEMLDASMVLVEGDDIGDGFFMTVIVTNDELQFDVHTGASPGSSDR
Ga0314792_110041_350_622	3300034667	Soil	MGLELERYPAVRARRIRVEEGIDLLLEEVALEGAKKVFALGQGQPKMLDALVVLVEGDAIGDGFFMTVIVTNDAWQCDAHSRASPGSSAR
Ga0314792_262080_153_488	3300034667	Soil	MLQPWTVELKRAKQGAKRPAGAGLKLERRPTVPARRTRVEKGVDLLLEEMPLEGAEELFGLGQGQPEMLDALMVLVEGEDIGDGLFMTVIVTDDELQFDTHTGASPGSSGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097876

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences