Metagenome Family F097868

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097868
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	79 residues
Representative Sequence	VETESCRISHHVHRIEFRQIVRDAEIAYAISPVVRRHRLTEEETEKFLLELRIPRAANVARITHRLVVNCSQKASSELAAQS
Number of Associated Samples	89
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	38.83 %
% of genes near scaffold ends (potentially truncated)	41.35 %
% of genes from short scaffolds (< 2000 bps)	81.73 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.154 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (26.923 % of family members)
Environment Ontology (ENVO)	Unclassified (31.731 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.423 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 64.55% β-sheet: 0.00% Coil/Unstructured: 35.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF05239	PRC	4.81
PF00011	HSP20	2.88
PF01544	CorA	2.88
PF13520	AA_permease_2	1.92
PF00487	FA_desaturase	0.96
PF03544	TonB_C	0.96
PF00923	TAL_FSA	0.96
PF13906	AA_permease_C	0.96
PF13248	zf-ribbon_3	0.96
PF01566	Nramp	0.96
PF09509	Hypoth_Ymh	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	2.88
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	2.88
COG0176	Transaldolase/fructose-6-phosphate aldolase	Carbohydrate transport and metabolism [G]	0.96
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.96
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.96
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.96
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.15 %
Unclassified	root	N/A	3.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.15 %
Unclassified	root	N/A	3.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.15 %
Unclassified	root	N/A	3.85 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	74.04 %
Unclassified	root	N/A	3.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	74.04 %
Unclassified	root	N/A	3.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	64.42 %
Unclassified	root	N/A	3.85 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	64.42 %
Unclassified	root	N/A	3.85 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	1.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	64.42 %
Unclassified	root	N/A	3.85 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	64.42 %
Unclassified	root	N/A	3.85 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	64.42 %
Unclassified	root	N/A	3.85 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig07541	All Organisms → cellular organisms → Bacteria	1758	Open in IMG/M
2170459003\|FZN2CUW02GY895	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	523	Open in IMG/M
3300000953\|JGI11615J12901_10131648	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	726	Open in IMG/M
3300001139\|JGI10220J13317_11659151	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	773	Open in IMG/M
3300001139\|JGI10220J13317_14826936	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	537	Open in IMG/M
3300002899\|JGIcombinedJ43975_10000887	All Organisms → cellular organisms → Bacteria	4351	Open in IMG/M
3300002899\|JGIcombinedJ43975_10036004	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	815	Open in IMG/M
3300005166\|Ga0066674_10344520	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300005179\|Ga0066684_11052229	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	523	Open in IMG/M
3300005295\|Ga0065707_10331020	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	948	Open in IMG/M
3300005468\|Ga0070707_101925129	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	559	Open in IMG/M
3300005529\|Ga0070741_10009509	All Organisms → cellular organisms → Bacteria	18827	Open in IMG/M
3300005529\|Ga0070741_10048557	All Organisms → cellular organisms → Bacteria	5215	Open in IMG/M
3300005552\|Ga0066701_10022043	All Organisms → cellular organisms → Bacteria	3184	Open in IMG/M
3300005552\|Ga0066701_10224765	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1157	Open in IMG/M
3300005553\|Ga0066695_10088367	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1890	Open in IMG/M
3300005554\|Ga0066661_10085583	All Organisms → cellular organisms → Bacteria	1864	Open in IMG/M
3300005559\|Ga0066700_10026221	All Organisms → cellular organisms → Bacteria	3343	Open in IMG/M
3300005560\|Ga0066670_10273189	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300005574\|Ga0066694_10115922	All Organisms → cellular organisms → Bacteria	1258	Open in IMG/M
3300006173\|Ga0070716_101648901	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	528	Open in IMG/M
3300006175\|Ga0070712_100136211	All Organisms → cellular organisms → Bacteria	1867	Open in IMG/M
3300006852\|Ga0075433_11161371	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	671	Open in IMG/M
3300006903\|Ga0075426_10878487	Not Available	676	Open in IMG/M
3300009012\|Ga0066710_101441505	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1066	Open in IMG/M
3300009012\|Ga0066710_102391367	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	766	Open in IMG/M
3300009147\|Ga0114129_13118362	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	541	Open in IMG/M
3300009162\|Ga0075423_11619184	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	696	Open in IMG/M
3300010301\|Ga0134070_10085419	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300010321\|Ga0134067_10490339	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	507	Open in IMG/M
3300010323\|Ga0134086_10009501	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2970	Open in IMG/M
3300010323\|Ga0134086_10181325	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	780	Open in IMG/M
3300011269\|Ga0137392_10968442	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	699	Open in IMG/M
3300012198\|Ga0137364_10156145	Not Available	1653	Open in IMG/M
3300012198\|Ga0137364_10246289	All Organisms → cellular organisms → Bacteria	1320	Open in IMG/M
3300012198\|Ga0137364_10596009	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	833	Open in IMG/M
3300012210\|Ga0137378_10014627	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	6826	Open in IMG/M
3300012285\|Ga0137370_10111745	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1549	Open in IMG/M
3300012356\|Ga0137371_10944466	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	655	Open in IMG/M
3300012896\|Ga0157303_10079887	Not Available	747	Open in IMG/M
3300012915\|Ga0157302_10030165	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1427	Open in IMG/M
3300012915\|Ga0157302_10297332	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	625	Open in IMG/M
3300012951\|Ga0164300_10543650	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	674	Open in IMG/M
3300012955\|Ga0164298_10021881	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2739	Open in IMG/M
3300012957\|Ga0164303_10052223	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1818	Open in IMG/M
3300012958\|Ga0164299_10017001	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2887	Open in IMG/M
3300012960\|Ga0164301_10033868	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2469	Open in IMG/M
3300012975\|Ga0134110_10539966	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	535	Open in IMG/M
3300012977\|Ga0134087_10635482	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	557	Open in IMG/M
3300012987\|Ga0164307_10055554	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2296	Open in IMG/M
3300012989\|Ga0164305_10567880	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	906	Open in IMG/M
3300014150\|Ga0134081_10242473	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	627	Open in IMG/M
3300014157\|Ga0134078_10094583	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1109	Open in IMG/M
3300015262\|Ga0182007_10129972	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	847	Open in IMG/M
3300017656\|Ga0134112_10040586	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1663	Open in IMG/M
3300017657\|Ga0134074_1103376	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	980	Open in IMG/M
3300017659\|Ga0134083_10197044	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	830	Open in IMG/M
3300018027\|Ga0184605_10035688	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2071	Open in IMG/M
3300018028\|Ga0184608_10519657	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	508	Open in IMG/M
3300018433\|Ga0066667_10364182	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1155	Open in IMG/M
3300018468\|Ga0066662_10046663	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2727	Open in IMG/M
3300019361\|Ga0173482_10133687	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300019361\|Ga0173482_10388907	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	644	Open in IMG/M
3300019885\|Ga0193747_1045344	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1094	Open in IMG/M
3300020006\|Ga0193735_1008079	All Organisms → cellular organisms → Bacteria	3340	Open in IMG/M
3300021413\|Ga0193750_1000982	All Organisms → cellular organisms → Bacteria	7720	Open in IMG/M
3300021432\|Ga0210384_11533284	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	572	Open in IMG/M
3300022756\|Ga0222622_10178786	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1392	Open in IMG/M
3300025898\|Ga0207692_10072036	All Organisms → cellular organisms → Bacteria	1824	Open in IMG/M
3300025905\|Ga0207685_10432698	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	681	Open in IMG/M
3300025910\|Ga0207684_10181256	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1816	Open in IMG/M
3300025922\|Ga0207646_10200246	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1804	Open in IMG/M
3300025929\|Ga0207664_11850803	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	526	Open in IMG/M
3300026308\|Ga0209265_1043353	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1392	Open in IMG/M
3300026329\|Ga0209375_1238836	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	622	Open in IMG/M
3300026524\|Ga0209690_1250759	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	556	Open in IMG/M
3300026528\|Ga0209378_1029394	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2916	Open in IMG/M
3300026536\|Ga0209058_1072607	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1839	Open in IMG/M
3300026547\|Ga0209156_10085376	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1593	Open in IMG/M
3300026548\|Ga0209161_10022044	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4546	Open in IMG/M
3300026693\|Ga0208709_105029	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	549	Open in IMG/M
3300026702\|Ga0208708_101322	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	644	Open in IMG/M
3300026791\|Ga0208072_103841	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300027018\|Ga0208475_1030525	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	532	Open in IMG/M
3300027576\|Ga0209003_1041439	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	805	Open in IMG/M
3300027748\|Ga0209689_1133814	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300027876\|Ga0209974_10104660	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	991	Open in IMG/M
3300028803\|Ga0307281_10161605	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	790	Open in IMG/M
3300028819\|Ga0307296_10080522	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1735	Open in IMG/M
3300028881\|Ga0307277_10082428	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300028881\|Ga0307277_10298809	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	714	Open in IMG/M
3300028881\|Ga0307277_10313484	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	697	Open in IMG/M
3300028884\|Ga0307308_10065358	All Organisms → cellular organisms → Bacteria	1716	Open in IMG/M
3300028884\|Ga0307308_10104103	All Organisms → cellular organisms → Bacteria → Acidobacteria	1352	Open in IMG/M
3300028906\|Ga0308309_10894156	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	771	Open in IMG/M
3300031231\|Ga0170824_106808570	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	560	Open in IMG/M
3300031716\|Ga0310813_11045403	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	746	Open in IMG/M
3300031716\|Ga0310813_11175887	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300032075\|Ga0310890_10285426	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1179	Open in IMG/M
3300032180\|Ga0307471_100956934	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1023	Open in IMG/M
3300032421\|Ga0310812_10548295	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	519	Open in IMG/M
3300033412\|Ga0310810_10190388	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2332	Open in IMG/M
3300033412\|Ga0310810_10655312	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	990	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.27%
Host-Associated	Host-Associated	5.77%
Engineered	Engineered	0.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.38%
Plants	Host-Associated → Plants	5.77%
Aquatic	Environmental → Aquatic	2.88%
Modeled	Engineered → Modeled	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.38%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.81%
Sediment	Environmental → Aquatic → Sediment	2.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.96%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.92%
Loam	Environmental → Terrestrial → Soil → Loam	13.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.04%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	24.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	26.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	19.23%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	10.58%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.96%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026693	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN595 (SPAdes)	Environmental	Open in IMG/M
3300026702	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN593 (SPAdes)	Environmental	Open in IMG/M
3300026791	Grasslands soil microbial communities from Kansas, USA that are Nitrogen fertilized - NN591 (SPAdes)	Environmental	Open in IMG/M
3300027018	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN575 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0541.00000720	2166559005	Simulated	VHSIEFRQIVRDAEIAYAISPVVRRHRLSADEIEKFLLELRIPRAANVAQITHRLVVTCSQKTNSELAAQS
E4A_04766570	2170459003	Grass Soil	HVHSIEFRQIVRDAEIAYAISPVVRRHRLSADEIEKFLLELRIPRAANVAQITHRLVVTCSQKTNSELAAQS
JGI11615J12901_101316481	3300000953	Soil	VQVETESGRISHHVHLIEFHQIVRDAESANAISPVVRRHRLTEEETKKFLLELRIPRAANVARLTDCLVVSCSQKASSQLAPQS*
JGI10220J13317_116591513	3300001139	Soil	MHSIEFRQIVRDAEIAYAISPVVRRHRLTEEDTEKFLLELCIPRAANVAQITNRLVVSCSQKASSELAAQS*
JGI10220J13317_148269362	3300001139	Soil	RIELHQILRDAEIAYAISPIGRRHRLSAEEIEKFLVELRIPRAANVAGITHRLVVNCSQKASSEIAAQS*
JGIcombinedJ43975_100008873	3300002899	Soil	VHRIEFLQIVRDAEIAYAISPVVRGHRLTEEETEKFLLELRIPRAANVARLTNRLVVSCSQKASSELAAQS*
JGIcombinedJ43975_100360042	3300002899	Soil	MHLTQFRQIIRDAEIAYAISPVVRRHRLSAEETEKFLVELRIPRAANVARITHGLVVNXSQKASSKLTAQS*
Ga0066674_103445203	3300005166	Soil	VHRIEFRQIIRDAEIAYAISPVVRRHRLTEEETEKLLVELRIPRATNVARITHRLVVNC
Ga0066684_110522291	3300005179	Soil	QIVRDAEIAYAISPVVRRHRLTEEETEKFLLELRIPRAANVARITNRLVVSCSQKASSELATQS*
Ga0065707_103310202	3300005295	Switchgrass Rhizosphere	VHSIEFRQIVRDAEIAYAISPVVRRHRLTEEDTEKFLLELRIPRAANVAQITHRLVVNCSQKAISELAARS*
Ga0070707_1019251292	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VHGIEFRQIVRDAEIAYAISPIVRKHHLTAEETERFLLELRIPRAANVAGITHRLVVF
Ga0070741_1000950910	3300005529	Surface Soil	MEAESCKISHYVHRIVFRQIVRDAEIAYAISPVVRRHRLTEEETKKFLLELRIPRAANVAGITHRLVVDCSQKASSELAAQS*
Ga0070741_100485577	3300005529	Surface Soil	VHRIEFLQIVRDAEIAYAISPVVRRHRLSAEETEKFLLELRIPRAANVAQITHRLVVNGSQKASSELAAQS*
Ga0066701_100220432	3300005552	Soil	VAQVQTESCRIFHHMHRIEFRQIVRDAEIAYAISPVVRRHRLTEEETEKFLLELHIPRAANVARITHRLVVNCPQKASSELAAQS*
Ga0066701_102247652	3300005552	Soil	TLCRGGGEHSLAVVIIGWEAGARAAQLETESCRIPHHVHRIEFRQIVRDAEIAYAISPVVRKHRLSAEETEKFLLELRIPRAANVAQITHRLVVSCSQKASSELADQS*
Ga0066695_100883674	3300005553	Soil	VETESCRISHHVHRIVFGQIVRDAEIAYAISPVVRRHRLTEEETEKFLVELRIPRAANVARITHRLVVNCSQKASSELAAQS*
Ga0066661_100855832	3300005554	Soil	VVIIGWEAGARAGQLETESCRIAHHVHRIEFRQIVRDAEIAYAISPVVRKHRLSAEETEKFLLELRIPRAANVAQITHRLVVSCSQKASSELADQS*
Ga0066700_100262215	3300005559	Soil	VVIIGWEAGARAAQLETESCRKPHHVHRIEFRQIVRDAEIAYAISPVVRKHRLSAEETEKFLLELRIPRAANVAQITHRLVVSCSQKASSELADQS*
Ga0066670_102731892	3300005560	Soil	MHRIEFRQIVRDAEIAYAISPVVRRHRLTEEETEKFLLELRIPRAANVARITHRLVVNCSQKASSELAAQS*
Ga0066694_101159222	3300005574	Soil	RDAEIAYAISPVVRRHRLTEEETEKFLVELRIPRAANVARITHRLVVNCSQKASSELAAQS*
Ga0070716_1016489011	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VHRIEFRQIIRDAEIAYAISPVVRRHRLTEEETKNFLLELRIPRAANVAQITHRLVVNCSQKASSELATQS*
Ga0070712_1001362112	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VETESCRISHHVHRIEFLQIVRDAEIAYAISPVVRRHRLTEEDTEKFLLELRIPRAANVARITHRLVVNCSQKASSELAAQS*
Ga0075433_111613711	3300006852	Populus Rhizosphere	VETESCRISHHVHSIEFRQIVRDAEIAYAISPVVRRHRLSEEDTEKFLLELRIPRAANVAQITHRLVVNCSQKASSELAAQS*
Ga0075426_108784871	3300006903	Populus Rhizosphere	RDAEIAYAISPVVRRHRLSEEDTEKFLLELRIPRAANVAQITHRLVVNCSQKASSELAAQS*
Ga0066710_1014415052	3300009012	Grasslands Soil	VETESCRISHHVHRIEFRQIVRDAEIAYAISPVVRRHRLTEEETEKFLLELRIPRAANVARITNRLVVSCSQKANSELATQS
Ga0066710_1023913672	3300009012	Grasslands Soil	MTKDRATLDGATAESCRISHHVHLIEFRQIVRDAEIAYVISPVVRRHRLTEEETKKFLLELRIPRAANVARITDRLVVSCSQKASSELAAQS
Ga0114129_131183622	3300009147	Populus Rhizosphere	IVFHQIVRDAEIAYAISPIVRRHSLTQEETEKFLLELRIPRAANVAGITHRLVVNCSQKESSELAGQS*
Ga0075423_116191841	3300009162	Populus Rhizosphere	NHGEAGARAAQMEAESCRISHRMHFIQFRQIIRDAEIAYAISPIVRRHSLTQEETEKFLLELRIPRAANVAGITHRLVVDCSQKANSELAARS*
Ga0134070_100854191	3300010301	Grasslands Soil	MHRIEFRQIVRDAEIAYAISPVVRRHHLTAEETEKFLLELRIPRAANVARITHRLVVNCPQKASSELAAQS*
Ga0134067_104903391	3300010321	Grasslands Soil	AAQVETESCRISHHVHRIVFGQIVRDAEIAYAISPVVRRHRLTEEETEKFLLELRIPRAANVARITNRLVVSCSQKASSELATQS*
Ga0134086_100095013	3300010323	Grasslands Soil	VHRIEFRQIVRDAEIAYAISPVVRRHRLTEEETEKFLLELHIPRAANVARITHRLVVNCPQKASSELAAQS*
Ga0134086_101813251	3300010323	Grasslands Soil	VFGQIVRDAEIAYAISPVVRRHRLTEEETEKFLVELRIPRAANVARITHRLVVNCSQKAS
Ga0137392_109684421	3300011269	Vadose Zone Soil	VHRIEFHQIFRDAEIAYAISPVVRRHRLSAEETEKFLLELRIPRAANVAQITHRLVVNCSQK
Ga0137364_101561452	3300012198	Vadose Zone Soil	MHLIQFRQIIRDAEIAYAISPVVRRHRLTEEETEKFLVELRIPRAANVARITQRLVVNCSQKASSELAAQS*
Ga0137364_102462892	3300012198	Vadose Zone Soil	RQIVRDAEIAYAISPVVRRHRLTEEETEKFLLELRIPRAANVARITNRLVVSCSQKASSELATQS*
Ga0137364_105960092	3300012198	Vadose Zone Soil	MTKDRATLDGATAESCRISHHVHLIEFRQIVRDAEIAYVISPVVRRHRLTEEETKKFLLELRIPRAANVARITDRLVVSCSQKASSELAAQS*
Ga0137378_100146277	3300012210	Vadose Zone Soil	VETESCRISHHVHRIEFRQIVRDAEIAYAISPVVRRHRLTEEETEKFLLELRIPRAANVARITNRLVVSCSQKASSELATQS*
Ga0137370_101117454	3300012285	Vadose Zone Soil	MTKDRATLDGATAESCRISHHLHLIEFRQIVRDAEIAYVISPVVRRHRLTEEETKKFLLELRIPRAANVARITDRLVVSCSQKASSELAAQS*
Ga0137371_109444661	3300012356	Vadose Zone Soil	GAIALGMTKDRATLDGATAESCRISHHLHLIEFRQIVRDAEIAYVISPVVRRHRLTEEETKKFLLELRIPRAANVARITDRLVVSCSQKASSELAAQS*
Ga0157303_100798871	3300012896	Soil	SIEFRQIVRDAEIAYAISPVVRRHRLTAEEIEKFLLELRIPRAANVAQITHRLVVTCSQKTSSELAAQS*
Ga0157302_100301653	3300012915	Soil	MHRIVFNQIVRDAEIAYAISPIVRKHHLTAEETEKFLLELRIPRAANVAGITHRLVVNCLQKTSSELAAQS*
Ga0157302_102973322	3300012915	Soil	MEAEWCRISHHVHRIEFLQIVRDAEIAYAISPVVRRHGLSAEEIEKFLRELRIPRAANVAQITHRLVVTCSQKTSSELAAQS*
Ga0164300_105436501	3300012951	Soil	SDAEIAYAISPVVRRHRLSTEETEKFLLELRTPRAANVAQITHRLVVNCPQKASSELAAQS*
Ga0164298_100218812	3300012955	Soil	MEGEWCRISHHVHRIEFLQIVCDAEIAYAISPVVRRHRLTEEETEKFLLELRIPRAANVAQITNRLVVNCSQKASSELAAQS*
Ga0164303_100522232	3300012957	Soil	MEGEWCRISHHVHRIEFLQIVRDAEIAYAISPVVRRHRLTEEETEKFLFELRIPRAANVAQITNRLVVNCSQKASSELAAQS*
Ga0164299_100170012	3300012958	Soil	MEGEWCRISHHVHRIEFLQIVRDAEIAYAISPVVRRHRLTEEETEKFLLELRIPRAANVAQITNRLVVNCSQKASSELAAQS*
Ga0164301_100338682	3300012960	Soil	MEGEWCRISHHGHRNEFLQIVRDAEIAYAISPVVRRHRLTEEETEKFLLELRIPRAANVAQITNRLVVNCSQKASSELAAQS*
Ga0134110_105399661	3300012975	Grasslands Soil	TGAIALGMTKDRATLDGATAESCRISHHVHLIEFRQIVRDAEIAYAISPVVRRHRLTEEETKKFLLELRIPRAANVARITDRLVVSCSQKASSELADQS*
Ga0134087_106354821	3300012977	Grasslands Soil	GVATLAIAEAESILSPWLVTGWEAGVRAAQVETESCRISHHVHRIEFRQIVRDAEIAYAISPVVRRHRLTEEETEKFLLELRIPRAANVARITHRLVVNCSQKASSELAAQS*
Ga0164307_100555541	3300012987	Soil	MEGEWCRISHHGHRIEFLQIVRDAEIAYAISPVVRRHRLTEEETEKFLLERRIPRAANVAQITNRLVVNCSQKASSELAAQS*
Ga0164305_105678801	3300012989	Soil	IAYAISPIVRGHRLTAEETEKFLLELRIPRAANVARITHRLVVHCSQKASSELAAQS*
Ga0134081_102424733	3300014150	Grasslands Soil	AYAISPVVRRHRLTEEETEKFLVELRIPRAANVARITHRLVVNCSQKASSELAAQS*
Ga0134078_100945832	3300014157	Grasslands Soil	PNGVATLAIAEAESILSPWLVTGWEAGVRAAQVETESCRISHHVHRIVFGQIVRDAEIAYAISPVVRRHRLTEEETEKFLVELRIPRAANVARITHRLVVNCSQKASSELAAQS*
Ga0182007_101299721	3300015262	Rhizosphere	VHQIVRDAEIANAISPVVRRHRLTEEETKKFLLELRIPRAANVARLTDCLVVSCSQKASSQLAPQS*
Ga0134112_100405862	3300017656	Grasslands Soil	VAQVQTESCRIFHHMHRIEFRQIVRDAEIAYAISPVVRRHRLTEEETKKFLLELRIPRAANVAQITHRLVVSCSQKASSELAAQS
Ga0134074_11033761	3300017657	Grasslands Soil	VETESCRISHHVHRIEFRQIVRDAEIAYAISPVVRRHRLTEEETEKFLLELRIPRAANVARITHRLVVNCSQKASSELAAQS
Ga0134083_101970443	3300017659	Grasslands Soil	VAQVQTESCRIFHHMHRIEFRQIVRDAEIAYVISPVVRRHRLTEEETKKFLLELRIPRAANVARITDRLVVSCSQKASSELAAQS
Ga0184605_100356882	3300018027	Groundwater Sediment	MEAESCRISHHVHRIVFRQIVRDAEIAYAISPVVRRHRLTEEETEKFLVELRIPRAANVARITDRLAVSCSQKASSQLVAQS
Ga0184608_105196571	3300018028	Groundwater Sediment	QVETESCRISHHVHLIQFRQIIRDAEIAYAISPVVRRHRLSGEETEKFLLELRIPRAANVARITHRLVVNCSQKAGVISEGW
Ga0066667_103641822	3300018433	Grasslands Soil	VAQVQTESCRIFHHMHRIEFRQIVRDAEIAYAISPVVRRHRLTEEETEKFLLELHIPRAANVARITHRLVVNCPQKASSELAAQS
Ga0066662_100466632	3300018468	Grasslands Soil	VVIIGWEAGARAGQLETESCRIAHHVHRIEFRQIVRDAEIAYAISPVVRKHRLSAEETEKFLLELRIPRAANVAQITHRLVVSCSQKASSELADQS
Ga0173482_101336872	3300019361	Soil	MHSIEFRQIVRDAEIAYAISPVVRRHRLTEEDTEKFLLELCIPRAANVAQITNRLVVSCSQKASSELAAQS
Ga0173482_103889072	3300019361	Soil	VHSIEFRQIVRDAEIAYAISPVVRRHRLTEEETEKFLLELCIPRAANVARITHRLVVTCSQNASSELAAQN
Ga0193747_10453441	3300019885	Soil	VFNQIVRDAEIAYAISPVVRKHRLTEEETEKFLVELRIPRAANIAHITHGLVVNRSQKASSELAAQS
Ga0193735_10080795	3300020006	Soil	MEAEWCRISHHVHLIEFRQIVRDAEIAYAISPVVRRHRLSAEKTEKFLLELRIPRAANVAQITNRLVVNCSQKASSELARLLSTPRRSAS
Ga0193750_10009825	3300021413	Soil	MEAEWCRISHHVHRIEFLQIVRDAEIAYAISPVVRRHRLSAEETEKFLVELRIPRAANVAQITNRLVVNCSQKASSELATQN
Ga0210384_115332841	3300021432	Soil	VHGIEFRQIVRDAEIAYAISPVVSRHRLTEEETEKFLLELRIPRAANVAQITNRLVVTCSQKASSELAAQS
Ga0222622_101787861	3300022756	Groundwater Sediment	VETESCRISHHVHRIEFRQIIRDAEIAYAISPVVRRHRLSGEETEKFLLELRIPRAANVARITHRLVVNCSQKAGVISEGW
Ga0207692_100720362	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VLIIGWEGMSSYGASEAESCRISHHVYRIEFRQILRDAEIAYAISPVERRHRLSAEETEKFLLELRIPRAANVARITHRLVVNCSQKASSELAAQS
Ga0207685_104326982	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	AYAISPVVRRHRLTEEETKNFLLELRIPRAANVAQITHRLVVTCSQKTSSELAAQS
Ga0207684_101812562	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VHRIEFHQIVSDAEIAYAISPVVRRHRLSAEETEKFLLEVRIPRAANVAQITHRLVVNCSQKVSSELAAQS
Ga0207646_102002462	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VAQVETESCRISHHVHGIEFRQIVRDAEIAYAISPIVRKHHLTAEETERFLLELRIPRAANVAGITHRLVCSKSLNWSIDCSQKASSELADQS
Ga0207664_118508032	3300025929	Agricultural Soil	QIVRDAEIAYAISPVVRRHRLTEEDTEKFLLELRIPRAANVARITHRLVVNCSQKASSELAAQS
Ga0209265_10433532	3300026308	Soil	VETESCRISHHVHRIVFGQIVRDAEIAYAISPVVRRHRLTEEETEKFLVELRIPRAANVARITHRLVVNCSQKASSELAAQS
Ga0209375_12388361	3300026329	Soil	NGVATLAIAEAESILSPWLVTGWEAGVRAAQVETESCRISHHVHRIVFGQIVRDAEIAYAISPVVRRHRLTEEETEKFLVELRIPRAANVARITHRLVVNCSQKASSELAAQS
Ga0209690_12507592	3300026524	Soil	GARAGQLETESCRIAHHVHRIEFRQIVRDAEIAYAISPVVRKHRLSAEETEKFLLELRIPRAANVAQITHRLVVSCSQKASSELADQS
Ga0209378_10293944	3300026528	Soil	MHRIEFRQIVRDAEIAYAISPVVRRHRLTEEETEKFLLELHIPRAANVARITHRLVVNCPQKASSELAAQS
Ga0209058_10726074	3300026536	Soil	VFGQIVRDAEIAYAISPVVRRHRLTEEETEKFLVELRIPRAANVARITHRLVVNCSQKASSELAA
Ga0209156_100853761	3300026547	Soil	WEAGVRAAQVETESCRISHHVHRIVFGQIVRDAEIAYAISPVVRRHRLTEEETEKFLVELRIPRAANVARITHRLVVNCSQKASSELAAQS
Ga0209161_100220444	3300026548	Soil	VETGSCRISHHVHRIVFGQIVRDAEIAYAISPVVRRHRLTEEETEKFLVELRIPRAANVARITHRLVVNCSQKASSELAAQS
Ga0208709_1050291	3300026693	Soil	ESCRISHHVHRIEFLQIVRDAEIAYAISPVVRGHRLTEEETEKFLLELRIPRAANVARLTNRLVVSCSQKASSELAAQS
Ga0208708_1013222	3300026702	Soil	CAPPSLLETAGGRACAFAAQVETESCRVSHHVHRIEFCQIVRDAEIAYAISPVVRRHRLRAEETEKFLLELRIPRAANVAGITHRLVVNCSQKASSELATQN
Ga0208072_1038411	3300026791	Soil	QIVRDAEIAYAISPVVRRHHLTAEETEKFLLELRIPRAANVAQITHRLVVSCSQKARSELAAQS
Ga0208475_10305252	3300027018	Soil	VFRQIVRDAEIAYAISPVVRRHRLTAEETKKFLLELRIPRAANVAGITHRLVVNCSQKASSELAAQS
Ga0209003_10414391	3300027576	Forest Soil	VESEPCRISHHVHRIVFRQIIRDAEIAYAISPVVRRHRLTEEETKKFLLELRIPRAANVAGFTASMLTVMRVSPASFSGS
Ga0209689_11338142	3300027748	Soil	TEFRQIVRDAEIAYAISPVVRKHRLSAEETEKFLLELRIPRAANVAQITHRLVVSCSQKASSELADQS
Ga0209974_101046602	3300027876	Arabidopsis Thaliana Rhizosphere	VETESCRISHHVHSIEFRQIVRDAEIAYAISPVVRRHRLSAEETEKFLLELRIPRAANVAQITNRLVVNCSQETSSELAAQS
Ga0307299_102471472	3300028793	Soil	VRTHVETESCRISHHVHHIEFRQIVRDAEIAYAISPVVRRHRLNAEETEKFLLELRIPRAANVAGITDRLVVFQKSQLADKL
Ga0307281_101616052	3300028803	Soil	AVTITGWEGMSSCGASETESCRTSHHVHLVEFRQIVSDAEIAYAISPVVRRHRLSTEETEKFLLELRTPRAANVAQITHRLVVNCSQKASSELAAQS
Ga0307296_100805222	3300028819	Soil	ETESCRISHHVHRIEFRQIIRDAEIAYAISPVVRRHRLSGEETEKFLLELRIPRAANVARITHRLVVNCSQKAGVISEGW
Ga0307277_100824282	3300028881	Soil	VETESCRISHHVHRIELRQIVRDAEIAYTISPVVRRHRLSAEEIEKFLLELCIPRAANVAQITNRLVVNGSQKTSSELAAQS
Ga0307277_102988091	3300028881	Soil	AQMEAESCRISHHVHHIEFRQIVRDAEIAYAISPVVRRHRLNAEETEKFLLELRIPRAANVAQITHRLVVNCSQKASSELAAQS
Ga0307277_103134841	3300028881	Soil	VFNQIVRDAEIAYAISPVVRKHRLTEEETEKFLLELRIPRAANVAQITNRLVVSCSPKASSELAAQS
Ga0307308_100653582	3300028884	Soil	MEAESCRISHHVHRIVFRQIVRDAEIAYAISPIVRRHRLTEEETEKFLVELRIPRAANVARITDRLAVSCSQKASSQLVAQS
Ga0307308_101041032	3300028884	Soil	VHHIEFRQIIRDAEIAYAISPIVRGHRLTAEETEKFLLELRIPRAANVAKITHRLVVNCSQKASSELAAQSRSGESRLGNASL
Ga0308309_108941561	3300028906	Soil	VQVETESGRMSHDVHCIEFRQIVRDAEIAYAISPVVRRHRLSAQEIEKFLLELRIPRAANVAQITHRLVITCSQKASSELAAQS
Ga0170824_1068085701	3300031231	Forest Soil	MKQAKALSVAEAESILAVLITGWEGMSSYGASEAESCRISHHVRRIEFRQILRDAEIAYAISPVVRRHRLSAEETEKFLLELRIPHAANVAGITHRLVVNCSQKASSELAAQS
Ga0310813_110454031	3300031716	Soil	VETESCRISHHVHRIQFLQIVRDAEIAYAISPVVCRHRLTEEETEKFLVELRIPRAANVAQITNRLVVNCSQKASSELATQN
Ga0310813_111758871	3300031716	Soil	IESRQIVRDAEIAYAISPVVRRHRLSAEEIEKFLLELRIPRAANVAQITHRLVVSGSQKASSELAAQS
Ga0310890_102854263	3300032075	Soil	IVRDAEIAYAISPVVRRHRLSAEEIEKFLLELRIPRAAKVARITHRLVVNCSQKASS
Ga0307471_1009569342	3300032180	Hardwood Forest Soil	VESEPCRISHHVQRIVFRQIIRDAEIAYAISPVVRRHRLTEEETEKFLLELRIPRAANVAQITHRLVVNCSQKASSELVAQS
Ga0310812_105482951	3300032421	Soil	AQMEAESCRIFHHMHRIVFNQIVRDAEIAYAISPIVRKHHLTAEETEKFLVELRIPRAANVAGITDRLVVVPKVSTGR
Ga0310810_101903884	3300033412	Soil	VQVETESGRISHHVHLIEFHQIVRDAEIANAISPVVRRHRLTEEETKKFLLELRIPRAANVARLTDCLVVSCSQKASSQLAPQS
Ga0310810_106553122	3300033412	Soil	MKRTLGSCRISHHVHLIEFRQIVRDAEIAYAISPVVRRHRLSAEEIEKFLLELRIPRAANVAQITHRLVVSGSQKASSELAAQS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F097868

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences