Basic Information | |
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Family ID | F097848 |
Family Type | Metagenome |
Number of Sequences | 104 |
Average Sequence Length | 47 residues |
Representative Sequence | MTPCPLGLAGQCYCANQVSSFAAAEPAKTAVLLLAHGSPENPDQIP |
Number of Associated Samples | 97 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 95.19 % |
% of genes near scaffold ends (potentially truncated) | 100.00 % |
% of genes from short scaffolds (< 2000 bps) | 91.35 % |
Associated GOLD sequencing projects | 95 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.32 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (84.615 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (14.423 % of family members) |
Environment Ontology (ENVO) | Unclassified (44.231 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (42.308 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 4.05% β-sheet: 10.81% Coil/Unstructured: 85.14% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.32 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Bog Forest Soil Bog Peatland Freshwater Sediment Watersheds Vadose Zone Soil Tropical Forest Soil Grasslands Soil Peatlands Soil Arctic Peat Soil Soil Grass Soil Soil Untreated Peat Soil Tropical Peatland Bog Forest Soil Bog Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Soil Fen Palsa Bog Rhizosphere Host-Associated |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
E41_02082150 | 2170459005 | Grass Soil | MSACPLGLGGRCYCADRVSSFTAAPSRTAVLLLAHGTPESPEHVPEFLSYVTG |
JGI12269J14319_101914751 | 3300001356 | Peatlands Soil | MTPCPLGPTSQCYCANHVSSFSAAAKSSGTSAKTTVLLLAHGSPENPDQIPEFLSYVTGG |
JGI12269J14319_102491122 | 3300001356 | Peatlands Soil | MTPCPLGLAGRCYCANQVSSFAVAEPAKTAVLLLAHGSPENPDQIPEFLRYVTG |
JGI12053J15887_106337281 | 3300001661 | Forest Soil | MTACPLGLAGQCYCANRVSSFVSSEGSAKTAVLLLAHGSPENPSQVSE |
Ga0062389_1016099141 | 3300004092 | Bog Forest Soil | MKPCPLGQSGQCYCANQVSSFAASQPAKTAVLLLAHGSPESPDQI |
Ga0066680_102427832 | 3300005174 | Soil | MTACPLGLAAQCYCANQVSSFTSSEMPAKTAVFLLAHGSPENPAQVPEFLG |
Ga0066790_103290011 | 3300005995 | Soil | MTACPLGLAGQCYCANRVNSFAAAERAKTAVLLLAHGSPENPDQIPE |
Ga0075029_1004122311 | 3300006052 | Watersheds | MVPCPLGQAAQCYCANRVSSFACAKSPAKTAVLLLAHGSPENPDQIPE |
Ga0075014_1003806951 | 3300006174 | Watersheds | MTMCPLGRAEACYCANQVSAFVRAPAQSLSARIAVLLLAHGSPENPD |
Ga0075021_109752862 | 3300006354 | Watersheds | MTPCPLGPARHCYCASRVTSFGGLPATAKQAVLLLAHGSPENSDQVPEFLNY |
Ga0066660_112981441 | 3300006800 | Soil | MTACPLGLAGQCYCANQVSSFAASEAPAKTAVLLLAHGSPENPGQ |
Ga0116225_11983043 | 3300009524 | Peatlands Soil | MSPCPLGLASQCYCANRVSAFAASERPAKTTVLLLAHGSPENPDQIP |
Ga0116137_10846512 | 3300009549 | Peatland | MTICPLGLVGQCYCANRVSSFAASEQSSKLSANTEVLLLAH |
Ga0116106_10703962 | 3300009645 | Peatland | MTPCPLGPASQCYCANQVSSFPASGPPANTAVLLLAHGSPENPDQIPEFL |
Ga0116224_104022251 | 3300009683 | Peatlands Soil | MPHRVKDGVEKMTACPLGLAGQCYCANRVSAFASSAAQPAKTAVLLLAHGSPENPSQVPEFLS |
Ga0116227_110789172 | 3300009709 | Host-Associated | MNRMTPCPLNLAGECYCANRVSSFGAGKLPAKTAVLLL |
Ga0116131_11551752 | 3300009760 | Peatland | MTPCPLGLAGQCYCANRVRSFASSEPAKTAVLLLAHGSPENPGQ |
Ga0116130_12168362 | 3300009762 | Peatland | MEPKMTACPLGLSRQCYCANHVSSFAAEANSSASPAKTAVLLLAHG |
Ga0116134_11259192 | 3300009764 | Peatland | MTACPLGLASQCYCANQVSSFAASEQSTQLSAKTAVLLLAHGSPENTSQVPEFLSSV |
Ga0116134_12765101 | 3300009764 | Peatland | MTPCPLGLASQCYCANRVSSFATPEQSSEQFAKTA |
Ga0116223_102300273 | 3300009839 | Peatlands Soil | MTPCPLGLAGQCYCANRVSSFASAELPARAAVLLLAHGSPE |
Ga0126373_110200622 | 3300010048 | Tropical Forest Soil | MTTCPLNLDDRCYCANHINTFEAAPSKTAVLLLAHGTPESPAQIPE |
Ga0134062_102334992 | 3300010337 | Grasslands Soil | MSACPLGFGNRCYCANQDSSFAAVSSKTAVLLLAHGTP |
Ga0074044_104808501 | 3300010343 | Bog Forest Soil | MTPCPLGQSGQCYCANRINSFAASAPAKTAVLLLAHGSPENPSQVPEFLGYVTGG |
Ga0126379_135338422 | 3300010366 | Tropical Forest Soil | MSGCPLDLGGHCYCANQVSWFAGEESKTAVLLLAHGSPEN |
Ga0137365_110790182 | 3300012201 | Vadose Zone Soil | MSACPLELGGRCYCASHVISFAAAPSQTAVLLLAHGTPENPDQIP |
Ga0137399_106834362 | 3300012203 | Vadose Zone Soil | MTACPLGLDAQCYCANQVSSFTSSEAPARTAVLLLAHGSPENPGQVPEFLGYV |
Ga0137399_112366901 | 3300012203 | Vadose Zone Soil | MTACPLAFAGQCYCANQVSWFAASEAPAKTAALLLAHGSP |
Ga0137394_103515442 | 3300012922 | Vadose Zone Soil | MSTEGCPLRLGAECYCANRVSAFATAHSSAAVLLLAHGTPENRDQIPEY |
Ga0137359_110722541 | 3300012923 | Vadose Zone Soil | MSACPLGLGGRCYCANHVVSFAGAPSKTAVLLLAHGTPEDPEQVPEYLPY |
Ga0137413_107444962 | 3300012924 | Vadose Zone Soil | MTPCPLGLAGQCYCANQKNSFASKQPAKTAVLLLAHGSPENPGQISEFLSYVTGG |
Ga0137404_102769811 | 3300012929 | Vadose Zone Soil | MSACPLGLGGRCYCANHVVSFAGAPSKTAVLLLAHGTPENPEQ |
Ga0137404_113492242 | 3300012929 | Vadose Zone Soil | MSACPLGFGNRCYCANQDSSFAAASSKTAVLLLAHGTPD |
Ga0137410_118121091 | 3300012944 | Vadose Zone Soil | MSACPLGFGNRCYCANQDSSFAAASSKTAVLLLAHGTPDT |
Ga0181521_106173362 | 3300014158 | Bog | MTICPLGLVGQCYCANRVSSFAASEQSSKLSAKTAVLLLAHGSPE |
Ga0181530_103793852 | 3300014159 | Bog | MTPCPLGPASQCYCANRASSFAAAEPAKAAVLLLAHGSPENPDQIPEFL |
Ga0181538_100607714 | 3300014162 | Bog | MTPCPLGPASQCYCANQVSSFPASGPPANTAVLLLAHGSPENPDQIPEFLRYVT |
Ga0187849_10662053 | 3300017929 | Peatland | MTACPLGLAGQCYCANQVSSFAAEANSSASPAKAAVLLLAHGSPENPDQVPEFLSYVTG |
Ga0187877_11726602 | 3300017931 | Peatland | MTPCPLGLAGQCYCANRVSSFAPSALPAKTAALLLAHGSPENPGQVSEFLSYVTG |
Ga0187801_101180362 | 3300017933 | Freshwater Sediment | MTPCPLGLAGRCYCANRVSSFAVTPAKTAVLLLAHG |
Ga0187809_102709321 | 3300017937 | Freshwater Sediment | MTACPLGLGSACYCRNHVSSFLPTEPSARDAKTAVLLLAHGSPENPDQVPEFLRYVTG |
Ga0187853_100308343 | 3300017940 | Peatland | MTACPLGLAGQCYCANQVSAFAASELPAKTAVLLLAHGSPENP |
Ga0187850_102743852 | 3300017941 | Peatland | MSECPLGLGSACYCANQVSSFWVAPASLAGPKTAVLLLAHGSPENPDQ |
Ga0187780_110537952 | 3300017973 | Tropical Peatland | MTCPLGLGGQCYCANKISFFAAAPTKTAVLLLAHGSPENPDQIPEFLRHVTG |
Ga0187777_111391851 | 3300017974 | Tropical Peatland | MTPCPLGLGGACYCANHLSSFPVAAAPSAGAKTAVLLLAHGSPENPDQIPEFL |
Ga0181520_102177611 | 3300017988 | Bog | MTPCPLGLVGQCYCSSHASSFACSQPKTKTAVLLLAHGSPENPDQTPEFLRY |
Ga0187816_100844552 | 3300017995 | Freshwater Sediment | MTDCPLGQPCQCYCAHGVTSFAAAGPSQKTAVLLLAHGSPENPSQVPEFLSYVT |
Ga0187870_12001661 | 3300017998 | Peatland | MTACPLGFASQCYCANRVSSFAASPAKAAVLLLAHGSPENPDQVPE |
Ga0187815_105228802 | 3300018001 | Freshwater Sediment | MTPCPLGLGGQCYCANQVSSFAVSPSKTAVLLLAHGSPENPGQVPEFLGYVT |
Ga0187888_11160423 | 3300018008 | Peatland | MTACPLSLASQCYCANRVSAFAASARPAKTDVLLLAHGSPEN |
Ga0187864_103791281 | 3300018022 | Peatland | MSPCPLGLASQCYCANRVSAFAASEHSAKTAVLLLAHGSPENPDQVPEFLSYVTG |
Ga0187881_101626592 | 3300018024 | Peatland | MTPCPLGQAGQCYCANRVSSFAASERSAKTAVLLLAHGSPENPDQIPEFLKYVT |
Ga0187857_101195022 | 3300018026 | Peatland | MTPCPLGQAGQCYCANRVSSFAASERSAKTAVLLLAHGSPENPDQIPEFLK |
Ga0187867_107730871 | 3300018033 | Peatland | MTPCPLGLAGQCYCANQASSFCAAPAKTAVLLLAHGSPENPDQIPEF |
Ga0187862_104188642 | 3300018040 | Peatland | MTPCPLGLAGQCYCANQASSFCAAPAKTAVLLLAHGSPEKPDQIP |
Ga0187871_107219702 | 3300018042 | Peatland | MTPCPLGLAGQCYCANRVNSFAAAPAKTAVLLLAHGSPETPD |
Ga0187890_102568972 | 3300018044 | Peatland | MTPCPLGRDAKCYCANQVSSFASAKPAKIAVLLLAHG |
Ga0187858_103185132 | 3300018057 | Peatland | MTPCPLGLAGQCYCANRVSSFSGSPAKTAVLLLAHGSPENPDQTPE |
Ga0187858_108986541 | 3300018057 | Peatland | MTPCPLGLAGRCYCANQVSAFAASELPAKTAVLLLA |
Ga0187784_113284012 | 3300018062 | Tropical Peatland | MTPCPLGLAGECYCANQINSFASAPAKTAVLLLAHGSPENPDQI |
Ga0187769_114296302 | 3300018086 | Tropical Peatland | MTPCPLGLTSECYCANRVSSFAAPDQSSERAARTAVLLLAHGSPETPGQIPEFLSYV |
Ga0182031_13164301 | 3300019787 | Bog | PCPLGLAGQCYCANRVNSFAAAPAKTAVLLLAHGSPETPDQTPEFLRYVTEAAHSHRK |
Ga0210395_101136161 | 3300020582 | Soil | MTACPLGLASQCYCANKISSFADRNRAKTAVLLLAHGSPETPDHIPEFLKYVTG |
Ga0210404_102558711 | 3300021088 | Soil | MTACPLGLAGQCYCANQVSSFAASEEPARTAVLLLAHGSPENPSQVP |
Ga0210405_102899022 | 3300021171 | Soil | MTACPLGLAGQCYCANQVSSFAASEEPARTAVLLLAHGSPENPSQVPEFLGY |
Ga0210383_109399341 | 3300021407 | Soil | MTACPLGLAGECYCAKQISSFGVSNPPAKTAVLLVAHGSPENPDQIPEFLGYVT |
Ga0224550_10245061 | 3300022873 | Soil | MTNCPLGLAGQCYCANHVSSFPAQPASATSAKTAVLLLAHGCPENPGQIPEFL |
Ga0208038_10005381 | 3300025446 | Peatland | MTICPLGLVGQCYCANRVSSFAASEQSSKLSAKTAVLLLAH |
Ga0208688_10537711 | 3300025480 | Peatland | MTPCPLGLAGQCYCANRVSSFAPSALPAKTAVLLLAHGSPENPGQVSEFLSYVTGGRPL |
Ga0208688_10618212 | 3300025480 | Peatland | MTPCPLGLAGQCYCANQVSSFAAAEPAKTAVLLLAHGSPENPDQIP |
Ga0208188_10580892 | 3300025507 | Peatland | MTACPLGLAGQCYCANQVSAFAASELPAKTAVLLLAHGSPENPS |
Ga0208188_11208461 | 3300025507 | Peatland | MTPCPLGQAGQCYCANRVSSFAASERSAKTAVLLLAHGSPENPDQIPEFLKY |
Ga0208714_11060492 | 3300025527 | Arctic Peat Soil | MTPCPLGQAGQCYCAKQVSSFAVPSAKTAVLLLAHGSPENPDQVPEFLSYVTG |
Ga0207664_105561732 | 3300025929 | Agricultural Soil | MTPCPLGLAGQCYCANQKNSFASKQPAKTAVLLLAHGSPENPGQIPEFLSYVT |
Ga0207665_112296321 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | MSACPLGLGGRCYCANHLSSFAPAPSKTAVLLLAH |
Ga0209839_102080131 | 3300026294 | Soil | MTACPLGLAGQCYCANRVNSFAAAERAKTAVLLLAHGSPENPDQIPEF |
Ga0257150_10164992 | 3300026356 | Soil | MTACPLGLAAQCYCANQVSSFAASEAPAKTAVLLL |
Ga0209117_10820761 | 3300027645 | Forest Soil | MTACPLALSGRCYCANHVSSFAASEQSSDLSAKTAVLMLAHGSPENPSQVPEFLNNV |
Ga0209530_11271261 | 3300027692 | Forest Soil | MTVTPCPLGLAGQCYCANRVNSFTAPKLPAKDAVLLLAHGS |
Ga0209248_100461431 | 3300027729 | Bog Forest Soil | MMACPLALANRCYCANQVSSFSTLEQASGTSAKTAVLLLAHGSPENTDQIPE |
Ga0209448_100964691 | 3300027783 | Bog Forest Soil | MTPCPLRLDSQCYCGNRVSSFAAAEPRKTAVLLLAHGSPENPDQI |
Ga0209180_105349162 | 3300027846 | Vadose Zone Soil | MSTCPLGLGGRCYCANHVSSFVAAPSKTAVLLLAHGSPEN |
Ga0209517_103379923 | 3300027854 | Peatlands Soil | MSPCPLGLASQCYCANRVSAFAASERPAKTTVLLLAHGSPENPDQIPEFLSYVTG |
Ga0209068_102390271 | 3300027894 | Watersheds | MTNCPLGLAEKCYCANSVSAFSASGPAKTAILLLAHGSPENPDQVPEFLRYVTG |
Ga0209067_104949411 | 3300027898 | Watersheds | MNPCPLGLGGQCYCANRVSSFAASPSKTAVLLLAHGSPENPGQVPEFLGYV |
Ga0209488_108220531 | 3300027903 | Vadose Zone Soil | MTACPLGLAGQCYCANRVSSFAASEEPARTAVLLL |
Ga0302171_100063511 | 3300028651 | Fen | MRNCPLGPIAQCYCANQVSSFSIAASKTAVLLLAHGTPESPSQIPEYLG |
Ga0302160_101240942 | 3300028665 | Fen | MTSCPLGLAGTCYCANSVNSFVRSSAVPEAKKTAVLLLAHGTPENPDQIPEYLRYVTG |
Ga0302202_101355961 | 3300028762 | Bog | MTDCPLNLAGECYCANRVSSFGAGKLPGKTAVLLLAHGSPDNPEQVPEFLN |
Ga0302222_102744992 | 3300028798 | Palsa | MTACPLGLASQCYCENKVSSFGSAKSPAKTAVLLLAHGSPENP |
Ga0302257_10941571 | 3300028855 | Fen | MRNCPLGPIAQCYCANQVSSFSIAASKTAVLLLAHGTPE |
Ga0302291_102462411 | 3300028865 | Fen | MRNCPLGPIAQCYCANQVSSFSIAASKTAVLLLAHGTPESPSQIPEYLGYVTGG |
Ga0311327_109222331 | 3300029883 | Bog | MTPCPLGLAGQCYCANQASSFSAEPAKANAAVLLLAHGSPENP |
Ga0311338_101264291 | 3300030007 | Palsa | MTACPLGLAARCYCANRINSFASEKLPAQTAVLLLAHGSPENPGQIPEFLSYVT |
Ga0302306_101237962 | 3300030043 | Palsa | MTNCPLGLAGQCYCANHVSSFPAQPASATSAKTAVLLLAHGSPENPGQIPEFLSYVTG |
Ga0302191_102353442 | 3300030049 | Bog | MTDCPLNLAGECYCANRVSSFGAGKLPGKTAVLLL |
Ga0311353_101647773 | 3300030399 | Palsa | MTACPLGLASQCYCENKVSSFGSAKSPAKTAVLLLAHGSPENPD |
Ga0311372_122007612 | 3300030520 | Palsa | MTACPLGLASQCYCENKVSSFGSAKSPAKTAVLLLAN |
Ga0311357_105152272 | 3300030524 | Palsa | MRLQALRGTEMTACPLGLASQCYCENKVSSFGSAKSPAKTAVLLLAHGSPENPDQIPEFL |
Ga0311354_103510351 | 3300030618 | Palsa | MTACPLGLASQCYCENKVSSFGSAKSPAKAAVLLLAHGSPENPD |
Ga0310039_103789212 | 3300030706 | Peatlands Soil | MTACPLGLAGQCYCANRVSAFASSAAQPAKTAVLLLAHGSPEN |
Ga0265316_100401391 | 3300031344 | Rhizosphere | MTACPLGLASQCYCANQVSSFAAAGQSSQLSAKTAVLLLAHGSP |
Ga0334804_076119_781_906 | 3300033818 | Soil | MTPCPLGLAGQCYCANQASSFSAEPAKANAAVLLLAHGSPEN |
Ga0370483_0045672_1227_1367 | 3300034124 | Untreated Peat Soil | MTPCPLSLAGECYCANRVSSFGAGKLPAKTAVLLLAHGSPDNPEQVP |
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