Metagenome Family F097803

Overview

Basic Information

• Family ID: F097803
• Family Type: Metagenome
• Number of Sequences: 104
• Average Sequence Length: 46 residues
• Representative Sequence: GENGFDSVDAIRGLKDATHVEHIDALLRAQYVAALTEYLPGKLVQ
• Number of Associated Samples: 86
• Number of Associated Scaffolds: 104

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.96 %
• % of genes near scaffold ends (potentially truncated): 96.15 %
• % of genes from short scaffolds (< 2000 bps): 95.19 %
• Associated GOLD sequencing projects: 83
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (74.038 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.308 % of family members)
• Environment Ontology (ENVO): Unclassified (25.000 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (49.038 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 45.21%
  β-sheet: 0.00%
  Coil/Unstructured: 54.79%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF06826	Asp-Al_Ex	25.00
PF10011	DUF2254	6.73
PF07617	DUF1579	2.88
PF02627	CMD	2.88
PF03129	HGTP_anticodon	2.88
PF00326	Peptidase_S9	2.88
PF00215	OMPdecase	1.92
PF08450	SGL	1.92
PF02566	OsmC	1.92
PF00135	COesterase	1.92

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2985	Uncharacterized membrane protein YbjL, putative transporter	General function prediction only [R]	25.00
COG0124	Histidyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.88
COG0423	Glycyl-tRNA synthetase, class II	Translation, ribosomal structure and biogenesis [J]	2.88
COG0441	Threonyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.88
COG0442	Prolyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.88
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	2.88
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	2.88
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	1.92
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	1.92
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	1.92

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.04 %
Unclassified	root	N/A	25.96 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.04 %
Unclassified	root	N/A	25.96 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.04 %
Unclassified	root	N/A	25.96 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	13.46 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	2.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.31 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %
Unclassified	root	N/A	25.96 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.96 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %
Unclassified	root	N/A	25.96 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	6.73 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.88 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	5.77 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.85 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.96 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	1.92 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %
Unclassified	root	N/A	25.96 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.88 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	5.77 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.85 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.96 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	1.92 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %
Unclassified	root	N/A	25.96 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.88 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	5.77 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.85 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.96 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	1.92 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	5.77 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %
Unclassified	root	N/A	25.96 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.88 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.85 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.96 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	1.92 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	4.81 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %
Unclassified	root	N/A	25.96 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.96 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.88 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.85 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.96 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	1.92 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	4.81 %
Luteitalea sp. TBR-22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	0.96 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %
Unclassified	root	N/A	25.96 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2.88 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000858|JGI10213J12805_10138529	All Organisms → cellular organisms → Bacteria	845
3300000891|JGI10214J12806_13088067	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	696
3300001431|F14TB_103161774	All Organisms → cellular organisms → Bacteria	586
3300004114|Ga0062593_100261150	All Organisms → cellular organisms → Bacteria → Proteobacteria	1440
3300004114|Ga0062593_102091990	All Organisms → cellular organisms → Bacteria	631
3300004114|Ga0062593_102173778	All Organisms → cellular organisms → Bacteria	621
3300004156|Ga0062589_102724005	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515
3300004480|Ga0062592_101773335	Not Available	603
3300005294|Ga0065705_10564987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	670
3300005295|Ga0065707_10171024	All Organisms → cellular organisms → Bacteria → Proteobacteria	1478

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.65%
Host-Associated	Host-Associated	41.35%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	0.96%
Plants	Host-Associated → Plants	41.35%
Terrestrial	Environmental → Terrestrial	57.69%

Category

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	0.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.04%
Roots	Host-Associated → Plants → Roots	0.96%
Sediment	Environmental → Aquatic → Sediment	0.96%
Soil	Environmental → Terrestrial → Soil	56.73%

Type

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.62%
Loam	Environmental → Terrestrial → Soil → Loam	7.69%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.54%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	12.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.96%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	3.85%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	12.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.92%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10213J12805_101385292	3300000858	Soil	GANSFDSVDAIRGLKDASHVDNVDALFRAQYVASLTDYVPGKLV*
JGI10214J12806_130880672	3300000891	Soil	RGLKDATHVEHVDALLRARYVAALTDYLPGKLAS*
F14TB_1031617742	3300001431	Soil	LGVMRDGLARWIAENRFESVEAIRGLKDASRVADVDAFLRAQYVAALTDYLPGKLVQ*
Ga0062593_1002611501	3300004114	Soil	NGFDSVDAIRGLKDATHVEDVDALLRAQYVASLTEYIPGKLVQ*
Ga0062593_1020919901	3300004114	Soil	LADNRFDSVDAIRSLKNAAHVDDADAFLRAQYVASLRDYVPGKLVQ*
Ga0062593_1021737781	3300004114	Soil	EHVATMREGLERWLGENGFDSVEAIRGLKDATHVEHVDALFRAQYVASLTEYLPGKLV*
Ga0062589_1027240051	3300004156	Soil	GENGFASVDAIRGLKDATHVEHVDALLRAQYVAALTDYLPATIVR*
Ga0062592_1017733351	3300004480	Soil	NGFDSVDAIRGLKDATHVEDVDALFRAQYVAALTEYLPAKLVQ*
Ga0065705_105649872	3300005294	Switchgrass Rhizosphere	ANGFDSVDAIRGLKDATHVEDVDALFRAQYVAALTEYLPVRLVQ*
Ga0065707_101710241	3300005295	Switchgrass Rhizosphere	NGVQHVATMREGLERWLGANGFDSVDAIRGLKDATHVEDVDALFRAQYVAALTEYLPAKLVQ*
Ga0070675_1003291551	3300005354	Miscanthus Rhizosphere	ATMRDGLARWLGANGFDSVAAIRGLKDASHVEHVDALFRAQYVASLTDYLPGKLA*
Ga0070659_1009149751	3300005366	Corn Rhizosphere	RWLGANGFDSVDAIRGLKDATHVEHLDALFRAQYVASLTEY*
Ga0070694_1019581342	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	SVDAIRGLKDATHVEHVDALLRAQYVAALTDYLPGKLVQ*
Ga0070686_1003552932	3300005544	Switchgrass Rhizosphere	EGLERWLGANGFDSVDAIRGLKDATHVEHVDALLRAQYVAALTEYLPGKLVQ*
Ga0070704_1002723752	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	FASVEAIRGLKDATHVEHVDALFRAQYVAALTDYLPATLIR*
Ga0068859_1001764991	3300005617	Switchgrass Rhizosphere	WLADNRFDSVDAIRSLKNAAHVDDADAFLRAQYVASLRDYVPGKLVQ*
Ga0068864_1000854031	3300005618	Switchgrass Rhizosphere	ATMRDGLARWLGANGFDSVAAIRGLKDASHVEHFDALFRAQYVASLTDYLPGKLA*
Ga0068866_108136422	3300005718	Miscanthus Rhizosphere	RWLGANGFDSVDAIRGLKDASHVDNVDALFRAQYVSSLTDYVPGKLV*
Ga0068858_1007937212	3300005842	Switchgrass Rhizosphere	WLGVNGFDSVNAIRGLKDATHVEHVDALFRAQYVASLTEYLPGKLV*
Ga0068862_1016939231	3300005844	Switchgrass Rhizosphere	EGLERWLGANGFDSVDAIRGLKDATHVEHLDALFRAQYVASLTEY*
Ga0070712_1006034131	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	EAWLGTNGFTSVEAIRGLKDATHVDQVDALLRAQYVAALTDYMPATLVR*
Ga0075367_105763501	3300006178	Populus Endosphere	VTAIRGLKDATHAEHVDALFRAQYVAALTEYLPGKLVQ*
Ga0079222_117137842	3300006755	Agricultural Soil	LESWLGENGFASVEAIRGLKDATHAEHVDALFRAQYVAALTDYLPTTPYASVRH*
Ga0075428_1015700381	3300006844	Populus Rhizosphere	GLERWLGENGFDSVSAIRGLKDATHVEHVDALLRAQYVAALTDYLPGKLVS*
Ga0075428_1018295342	3300006844	Populus Rhizosphere	GLDRWLSENQFESVDAIRSLKDGTHVDDADAFLRAQYVASLRDYVPGKLVQ*
Ga0075431_1010898041	3300006847	Populus Rhizosphere	ENGFDSVSAIRGLKDATHVEHVDALLRAQYVAALTDYLPGKLVS*
Ga0075429_1004625512	3300006880	Populus Rhizosphere	RGLKDATHVEDVDALFRAQYVAALTEYLPAKLVQ*
Ga0079219_110197691	3300006954	Agricultural Soil	RGLKDATHAEHVDALFRAQYVAALTEYLPATIVR*
Ga0075419_103117771	3300006969	Populus Rhizosphere	VDAIRGLKDATHVEHVDTLLRAQYVAALPEYVPGKFVQ*
Ga0079218_139579101	3300007004	Agricultural Soil	RFDSVDAIRSLKNAAHVDDADAFLRAQYVASLRDYVPGKLVQ*
Ga0111538_139411332	3300009156	Populus Rhizosphere	MREGLERWPGENGFASVEAIRGLKDATHVEHVDALIRAQYVSALTDYLSAPVR*
Ga0105249_129788141	3300009553	Switchgrass Rhizosphere	MREGLERWLGANGFDSVDAIRGLKDASHVDNVDALFRAQYVSSLTDYVPGKLV*
Ga0134124_124885581	3300010397	Terrestrial Soil	DGLARWLGANGFDSVAAIRGLKDASHVEHVDALFRAQYVASLTDYLPGKLA*
Ga0150985_1178415371	3300012212	Avena Fatua Rhizosphere	GCVSVDAIRGLKDATHVEHVDALFRAQYVASLTEYLPGKLV*
Ga0150984_1082444922	3300012469	Avena Fatua Rhizosphere	LERWLEANGYASVDAIRGLKDATHVEHVDALFRAQYVASLTDYVPTKLV*
Ga0150984_1151997791	3300012469	Avena Fatua Rhizosphere	LERWLDANGFASVDAIRGLKDATHVGHVDALFRAQYGASLTEYLPGKLV*
Ga0150984_1155016112	3300012469	Avena Fatua Rhizosphere	WLGANGFDSVAAIRGLKDASHVEHVDALFRAQYVASLTEYLPGKLA*
Ga0157293_100252271	3300012898	Soil	GANGFDSVDAIRGLKDASHVEHVDALFRAQYVASLTEYVPGKLV*
Ga0157293_100573512	3300012898	Soil	DAIRGLKDATHVEHVDALFRAQYVASLTEYLPGKLV*
Ga0157295_100107012	3300012906	Soil	TMREGLECWLGANGFDSVDAIRGLKDASHVEHVDALFRAQYVASLTEYVPGKLV*
Ga0157295_100899361	3300012906	Soil	IRSLKDGTHVDDADAFLRAQYVASLRDYVPGKLVQ*
Ga0157283_101603411	3300012907	Soil	LREGLERWLGENGFDSVDAIRGLKDATHVEHVDALFRAQYVASLTEYVPGKLV*
Ga0157290_101280262	3300012909	Soil	FESVDAIRSLKNGTHVDDADAFLRAQYVASLRDYVPGKLVQ*
Ga0157298_103269981	3300012913	Soil	EGLERWLGENGFDSVDAIRGLKDATHVEHVDALFRAQYVASLTEYVPGKLV*
Ga0157298_104257241	3300012913	Soil	VEAIRGLKDATHVEHVDALIRAQYVSALTNYLSAPVR*
Ga0157302_105009851	3300012915	Soil	LGVIRAGLERWLVDNRFDSVDAIRSLKDATHVDDADAFLRAQYVASLRDYVPGKLVQ*
Ga0164303_113870461	3300012957	Soil	DSVDAIRGLKDATHVEHVDALFRAQYVASLTEYMPGKLV*
Ga0164299_106104261	3300012958	Soil	ENGFDSVDAIRGLKDATHVEHVDALFRAQYVASLTEYMPGKLV*
Ga0164304_116120971	3300012986	Soil	TLRDGVSRWLDANRFNSVEAIRGLKDATHAEHVDALFRAQYVAALTEYVPGKLVQ*
Ga0164306_104072922	3300012988	Soil	VEAIRGLKDATHAEHVDALFRAQYVAALTEYVPGKLVQ*
Ga0157380_122681342	3300014326	Switchgrass Rhizosphere	DAIRSLKSATHVDDADAFLRAQYVASLRDYVPGKLVQ*
Ga0180093_11082753	3300015258	Soil	GVMRDGLERWLADNRFDSVDAIRSLKDATHADDADAFLRAQYVASQRDYVPGKLVQ*
Ga0132258_114055613	3300015371	Arabidopsis Rhizosphere	VDAIRGLKDGTHVEHVDALLRAQYVAALTDYLPASTVR*
Ga0132256_1013642481	3300015372	Arabidopsis Rhizosphere	GFASVEAIRGLKDATHVDQLDALLRAQYVAALTEYLPAIPIR*
Ga0132256_1020812272	3300015372	Arabidopsis Rhizosphere	SAIRGLKDATHVEHVDALLRAQYVAALTDYLPGKLVS*
Ga0132256_1036366641	3300015372	Arabidopsis Rhizosphere	TMRKGLERWLGEHGFDSVSAIRGLKDATHVEHVDALLRAQYVAALTDYLPGKLVS*
Ga0132256_1037120132	3300015372	Arabidopsis Rhizosphere	GFDSVDAIRGLKDGTHVEHVDALLRAQYVAALTDYLPASTVR*
Ga0132257_1000204767	3300015373	Arabidopsis Rhizosphere	DSVDAIRGLKDATHVEDVDALFRAQYVAALTEYLPAKLVQ*
Ga0132257_1022271502	3300015373	Arabidopsis Rhizosphere	RGLKDATQVEHVDALLHAQYVAALTEYVPTKLVQ*
Ga0132257_1040446771	3300015373	Arabidopsis Rhizosphere	LRHGPRHLAAMRAGLERWLEANGFDSVAAIRGLKDASHVEHVDALFRAQYVASLTDYLPGKLA*
Ga0132255_1006290291	3300015374	Arabidopsis Rhizosphere	AIRGLKDATHVEHVDALFRAQYVAALTDYLPGKLVQ*
Ga0163161_114778982	3300017792	Switchgrass Rhizosphere	PEHVATMRDGLARWLGANGFDSVAAIRGLKDASHVEHFDALFRAQYVASLTDYLPGKLA
Ga0173481_103436413	3300019356	Soil	ERWLEDNRFDSVDAIRSLKNAAHVDDADAFLRAQYVASLRDYVPGKLVQ
Ga0173482_101224491	3300019361	Soil	NGFDSVNAIRGLKDATHVEQVDALFRAQYVASLTEYLPGKLV
Ga0173479_100429291	3300019362	Soil	DSVAAIRGLKDASHVEHFDALFRAQYVASLTDYLPGKLA
Ga0247800_10851941	3300023263	Soil	AIRGLKDATHVDQVDALIRAQYVAALTEYLPATLGR
Ga0207697_101855642	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	GAFDSVDAIRGLKDASHVDNVDALFRAQYVSSLTDYVPGKLV
Ga0207652_113758112	3300025921	Corn Rhizosphere	ERWLGENGYDSVDAIRGLKDATHVEGVDALLRAQYVAALTEYLPGKLVQ
Ga0207681_107898372	3300025923	Switchgrass Rhizosphere	YLASLREGLERWLGENGFDSVDAIRGLKDATHVEHVDALFRAQYVASLTEYLPGKLV
Ga0207650_102154353	3300025925	Switchgrass Rhizosphere	RDGLARWLGANGFDSVDAIRGLKDASHVEHVDALFRAQYVAALTDYLPGKLVS
Ga0207709_110285421	3300025935	Miscanthus Rhizosphere	EGLERWLGANGFDSVDAIRGLKDATHVEHVDALLRAQYVAALTEYLPGKLVQ
Ga0207709_117967682	3300025935	Miscanthus Rhizosphere	AAIRGLKDASHVEHVDALFRAQYVASLTDYLPGKLA
Ga0207670_114156411	3300025936	Switchgrass Rhizosphere	WLGENGFASVDAIRGLKDATHVEHVDALLRAQYVAALTDYLPATSVR
Ga0207691_111155371	3300025940	Miscanthus Rhizosphere	DSVDAIRGLKDATHVEHVDALLRAQYVAALTEYLPGKLVQ
Ga0207711_115444801	3300025941	Switchgrass Rhizosphere	WLERWLGANGFDSVNAIRGLKDATHVEHVDALFRAQYVASLTEYLPGKLV
Ga0207712_120556942	3300025961	Switchgrass Rhizosphere	SVDAIRGLKDASHVDNVDALFRAQYVSSLTDYVPGKLV
Ga0207640_111848761	3300025981	Corn Rhizosphere	MREGLERWLGENGFDSVSAIRGLKDATHVEDVDALLRAQYVASLTEYLPGKLVPP
Ga0207708_110494531	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	WLADNRFDSVDAIRSLKDGTHVDDADAFLRAQYVASLRDYVPGKLVQ
Ga0207683_112575492	3300026121	Miscanthus Rhizosphere	WLGESGFDSVDAIRGLKDATHVEQVDALLRAQYVAALTEYVPTNLGQ
Ga0209967_10670141	3300027364	Arabidopsis Thaliana Rhizosphere	MRQGLERWLDANGFTSVDAIRGLKDATHVESVDALLRAQYVAALTDYLPGKLVQ
Ga0268265_118516861	3300028380	Switchgrass Rhizosphere	GFDSVDAIRGLKDATHVEHLDALFRAQYVASLTEY
Ga0247828_110793102	3300028587	Soil	MREGLERWLEANGYDSVDAIRGLKDATHVEDIDALLRAQYVAALTDYLPGKLV
Ga0247824_105034212	3300028809	Soil	HVATMRDGLKRWLVANGFDSVDAIRGLKDATHVEHVDALIRAQYVAALTEYLPGKLVQ
Ga0247824_108475221	3300028809	Soil	PEYMGVMRDGLERWLVDNGFDSVDAIRSLKGATHVDDADAFLRAQYVASLRDYVPGKLVQ
Ga0310886_104707782	3300031562	Soil	GENGFDSVDAIRGLKDATHVEHIDALLRAQYVAALTEYLPGKLVQ
Ga0310886_108248371	3300031562	Soil	MRDGLDRWLSENQFESVDAIRSLKDGTHVDDADAFLRAQYVASLRDYVPGKLVQ
Ga0318555_103806762	3300031640	Soil	ERWLDENGFDSVDAIRGLKDATHVENVDALLRAQYVAALTEYLPGKLIQ
Ga0318554_103463161	3300031765	Soil	LERWLDENGFDSVDAIRGLKDATHVENVDALLRAQYVAALTEYLPGKLIQ
Ga0310900_101693481	3300031908	Soil	AGLERWLEANAFDSVDAIRGLKDATHVDDVDALIRAQYVAALTEYLPGKLVQ
Ga0310900_106833852	3300031908	Soil	ENAFASVEAIRGLKDATHVDQVDALIRAQYVAALTEYLPATLGR
Ga0307412_115602792	3300031911	Rhizosphere	MREGLERWLGENGFDSVDAIRGLKDATHVEHVDALLRAQYVAALTEYLPGKLVQ
Ga0308174_100568543	3300031939	Soil	NRFDSVDAIRGLKDATHVEHVDALLRAQYVSALTEYLPGKLVQ
Ga0310885_107941542	3300031943	Soil	DSVDAIRGLKDATHVEHVDALLRAQYVAALTDYMPAKLVQ
Ga0310884_102362023	3300031944	Soil	GLERWLGANGFDSVDAIRGLKDATHVEGVDALLRAQYVAALTEYLPGKLVQ
Ga0308176_104191213	3300031996	Soil	AIRGLKDATHVEDVDALLRAQYVASLTEYIPGKLVQ
Ga0310902_103110122	3300032012	Soil	LGEHGFDSVSAIRGLKDATHVEHVDALLRAQYVAALTDYLPGKLVS
Ga0310902_112161072	3300032012	Soil	REGLERWLGENAFASVEAIRGLKDATHVDQVDALIRAQYVAALTEYLPATLGR
Ga0318559_105570082	3300032039	Soil	ENAFDSVDAIRGLKDATHAEDVDALLRAQYVAALTEYLPGRLVQ
Ga0318556_107212832	3300032043	Soil	REGLERWLDENGFDSVDAIRGLKDATHVENVDALLRAQYVAALTEYLPGKLIQ
Ga0318524_106368452	3300032067	Soil	TMREGLERWLGENGFDSVDAIRGLKDATHAEHVDALIRAQYVAALTEYLPGKLV
Ga0315910_112621151	3300032144	Soil	FDSVAAVRGLKDATHVEHVDALLRAQYVAALTGYLPATLAR
Ga0315912_100156501	3300032157	Soil	VAAVRGLKDATHVEHVDALLRAQYVAALTGYLPATLAR
Ga0307472_1027919131	3300032205	Hardwood Forest Soil	RWLGANGFDSVDAIRGLKDGTHVEHVDALFRAQYVASLTEYLPGKLV
Ga0364943_0077710_3_110	3300034354	Sediment	IRSLKDGTHVDDADAFLRAQYVASLRDYVPGKLVQ