Basic Information | |
---|---|
Family ID | F097802 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 104 |
Average Sequence Length | 50 residues |
Representative Sequence | VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLSRFRAWLRR |
Number of Associated Samples | 81 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 45.63 % |
% of genes near scaffold ends (potentially truncated) | 40.38 % |
% of genes from short scaffolds (< 2000 bps) | 83.65 % |
Associated GOLD sequencing projects | 77 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.44 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (72.115 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.231 % of family members) |
Environment Ontology (ENVO) | Unclassified (30.769 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (61.538 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 42.31% β-sheet: 0.00% Coil/Unstructured: 57.69% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.44 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Groundwater Sediment Bog Forest Soil Groundwater Sediment Groundwater Sediment Soil Soil Vadose Zone Soil Tropical Forest Soil Serpentine Soil Grasslands Soil Surface Soil Soil Soil Grasslands Soil Tropical Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere Corn Rhizosphere Tabebuia Heterophylla Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
KansclcFeb2_05704740 | 2124908045 | Soil | VPKPVYWKPKYPTRIMRERAFAKRQLARDERLRAEQSPSLAARLRAWLRR |
JGI10216J12902_1013537123 | 3300000956 | Soil | VPKPVYWKPKYPTRVMRERAFAKQQAAREERLQAERPPSLIARLRDWLRR* |
JGI10216J12902_1110844082 | 3300000956 | Soil | VPKPIYWKPKYPTRVMRERAFAKQQAGRDERLRADRSPALLTRFRAWLRR* |
JGI10216J12902_1127762233 | 3300000956 | Soil | VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRADRSPSLLGRFRAWLRR* |
Ga0062593_1002106722 | 3300004114 | Soil | VPKPVYWKPKYPTRVMRERAFAKRQAAHEERLRAERPPSLVSRFRAWLRR* |
Ga0062593_1023008462 | 3300004114 | Soil | VPKPVYWKPKYPTRVMRERAFAKQQRARDAKLRAERAPSPLSRFRAWLRR* |
Ga0062594_1032343572 | 3300005093 | Soil | VPKPVYWKPKYPTRVMRERAFAKRQAARDDQLRADRPPSLLGRFRAWLLS* |
Ga0066869_101106411 | 3300005165 | Soil | LGLAVPKPVYWKPKYPTRVMRERAFAKQQAAREARLRAERPPSLLTRFRAWLRR* |
Ga0070683_1000385963 | 3300005329 | Corn Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKREAARDERLRAERRPSLVARLRDWLRR* |
Ga0070683_1001813602 | 3300005329 | Corn Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKQQAAREERLRAGRPPSLLARFRDWLRR* |
Ga0066388_1068955271 | 3300005332 | Tropical Forest Soil | PVYWKPKYPTRVMRERAFAKRELAREERLRADRPPSLLARFRAWLRS* |
Ga0066686_108622011 | 3300005446 | Soil | VPKPVYWKPKYPTRVMRERAFAKRQAARDERLRAERPPSLAARLRAWL |
Ga0066682_101198763 | 3300005450 | Soil | VPVYWKPKYPTRVMRERAFAKQQAARDERLRAERPPSLLARFRAWLRR* |
Ga0073909_100148953 | 3300005526 | Surface Soil | VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERASSLLTRFRAWLHR* |
Ga0070697_1014881192 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | VRRPVYWKPAYPTRVMRERAFAKRQRARDEALARERGPSLVQRLRELLRRGGGA* |
Ga0066701_107994632 | 3300005552 | Soil | MPRPVIWKPRYPTRVMRERAFAKQQLAREQALEATRPPSLRSRFVAWLKR* |
Ga0070664_1009927302 | 3300005564 | Corn Rhizosphere | VYWKPKYPTRVMRERAFAKQQAAREERLRAGRPPSLLARFRDWLRR* |
Ga0066706_103373972 | 3300005598 | Soil | VPRPVYWKPKYPTRRMRERAFVKQQLAREESLRAAAPPSLLARFRAWLKR* |
Ga0066905_1000000467 | 3300005713 | Tropical Forest Soil | VPKPVYWKPKYPTRVMRERAFAKQQAARDELLRAERPPSLVARFRAWLRR* |
Ga0066905_1000164664 | 3300005713 | Tropical Forest Soil | VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERPPSLLRRFRDWLRR* |
Ga0066905_1001147912 | 3300005713 | Tropical Forest Soil | VPRPVYWKPKYPTRVMRERAFAKQQAAREERLRAERPPSLLTRFRAWLRR* |
Ga0068861_1026211122 | 3300005719 | Switchgrass Rhizosphere | VPRPVYWKPKYPTRVMRERAFAKRQSARDERLRAERPPSLATRLRAWLRR* |
Ga0066903_1028695753 | 3300005764 | Tropical Forest Soil | VPKPVYWKPKYPTRVMRERAFAKRELAREERLRADRPPSLLARFRAWLRS* |
Ga0066903_1057699942 | 3300005764 | Tropical Forest Soil | VPKPVYWKPKYPTRVMRERAFAKQQAAREERLRAERPPSVVSRFRAWLQR* |
Ga0081540_13182962 | 3300005983 | Tabebuia Heterophylla Rhizosphere | VPKPVYWKPKHPTRVMRERAFAKRQAARDERLRAERPPSLASRLRAWLSR* |
Ga0070712_1006159722 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKRELAREERLRADRTPSLFARFRAWLRR* |
Ga0097621_1000746023 | 3300006237 | Miscanthus Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKGQAARDEQLRADRPPSLLGRFRAWLLS* |
Ga0074051_117840621 | 3300006572 | Soil | KPVYWKPKYPTRVMRERAFAKRQAARDERLRAERPPSLAARFRDWLRR* |
Ga0074055_118702043 | 3300006573 | Soil | VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLTRFRAWLHR* |
Ga0074059_119504511 | 3300006578 | Soil | VPKPVYWKPKYPTRVMRERAFAKQQAAREARLRAERPPSLLTRFRAWLLR* |
Ga0074059_120833022 | 3300006578 | Soil | YWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLTRFRAWLHR* |
Ga0074054_113237751 | 3300006579 | Soil | LHLRRRLVPKPVYWKPKYPTRVMRERAFAKRQAARDERLRAERPPSFAVRFLAWLHR* |
Ga0074054_119904913 | 3300006579 | Soil | KPVYWKPKYPTRVMRERAFARRQAARDERLRAERPPSLAARFRDWLRR* |
Ga0074062_125032052 | 3300006606 | Soil | FEDRVPLGLAVPKPVYWKPKYPTRVMRERAFAKQQAAREARLRAERPPSLLTRFRAWLRR |
Ga0074062_127218972 | 3300006606 | Soil | VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLTRFRAWLYR* |
Ga0066660_104067433 | 3300006800 | Soil | VRPRPVIWKPRYPTRVMRERAWAKQDLARAEAAEGARKRSRLGRLWARLFRST* |
Ga0068865_1011487712 | 3300006881 | Miscanthus Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKGQAARDERLRAERPPSLATRLRAWLHR* |
Ga0075426_114922652 | 3300006903 | Populus Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKQQAAREERLRAERPPSFLARFRDWLRR* |
Ga0074063_136818581 | 3300006953 | Soil | HPVGLDVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLTRFRAWLYR* |
Ga0066710_1007591051 | 3300009012 | Grasslands Soil | HLGLPMAPVYWKPRYPTRRMRERAFAKQELARERAIKRSPRHPSWLDRFRDWLRR |
Ga0066710_1023250272 | 3300009012 | Grasslands Soil | MPRPVIWKPRYPTRVMRERAFAKQQLAREEALKATRPPSLLSRFRAWLRR |
Ga0099830_101581502 | 3300009088 | Vadose Zone Soil | VADVPKPIYWKPRYPTRVMRERAFAKRQLAREQALKATRPPSLLSRFRAWLKR* |
Ga0066709_1019676422 | 3300009137 | Grasslands Soil | MPRPVIWKPRYPTRVMRERAFAKQQLAREEALKATRPPSLLSRFRAWLRR* |
Ga0075423_127704731 | 3300009162 | Populus Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERPPSLLARFRAWLRR* |
Ga0105242_108412181 | 3300009176 | Miscanthus Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRADRPPSLLGRFRAWLLS* |
Ga0126315_101454862 | 3300010038 | Serpentine Soil | MPRPVYWKPRYPTRVMRERVFARRQLARDEALSRQAGPSFLERLRKLLRGGE* |
Ga0126382_111323032 | 3300010047 | Tropical Forest Soil | VPKPVYWKPKYPTRVMRERAFAKRQAAREELLRAERPPSLLARFRAWLSR* |
Ga0134071_105857732 | 3300010336 | Grasslands Soil | PVYWKPKYPTRVMRERAFAKRQAARDERLRAERPPSLAARLRAWLRR* |
Ga0126376_103260831 | 3300010359 | Tropical Forest Soil | AVPKPVYWKPKYPTRVMRERAFAKRELAREERLRADRPPSLLMRFRAWLRR* |
Ga0126372_116029751 | 3300010360 | Tropical Forest Soil | VPKPVYWKPKYPTRVMRERAFAKRQAAREERLRAERPPSLVSRFRAWLHR* |
Ga0126372_133264071 | 3300010360 | Tropical Forest Soil | VPKPVYWKPKYPTRVMRERAFAKQQAARDERLRAERPPSLLARFRAW |
Ga0137374_110419221 | 3300012204 | Vadose Zone Soil | MPRPVYWKPRYPTRVMRERAFAKRQRARDEALRRPAGPSLLERLRKRLRRGGE* |
Ga0137376_100945535 | 3300012208 | Vadose Zone Soil | VPPPRPVYWKPRYPTRVMRERAFAKRQLAQEEALRNARG |
Ga0137369_100062056 | 3300012355 | Vadose Zone Soil | MPVYWKPRYPTRVMRERAFAKRQRARDEALRRPAGPSLLERLRKRLRRGVNR* |
Ga0137369_1000996811 | 3300012355 | Vadose Zone Soil | ARPDGGTASGALVPRPVYWKPRYPTRVMRERAFAKRQLAREETLHRAGRPSLLRRLRSWLHR* |
Ga0134044_12336022 | 3300012395 | Grasslands Soil | RLVPRPVIWKPKYPTRVMRERAFAKQQLAREQELRREPRTSPLSRLRAWLGW* |
Ga0126375_118679431 | 3300012948 | Tropical Forest Soil | VPKPVYWKPKYPTRVMRERAFAKRQAAREELLRAERPPSLLARFRAW |
Ga0164299_106819722 | 3300012958 | Soil | MPKPVYWKPKYPTRVMRERAFAKRQAARDERLRAERSPSLATRLRDWLRT* |
Ga0164299_116505901 | 3300012958 | Soil | VPKPVYWKPKYPTRVMRERAFAKQQRARDAKLRAERAPSPLSRFRAWLR |
Ga0164301_102249972 | 3300012960 | Soil | VPKPVYWKPKYPTRVMRERAFAKQQRARDAKLRAERAPSL |
Ga0164304_109676872 | 3300012986 | Soil | VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSPLSRFRAWLRR* |
Ga0164307_103005211 | 3300012987 | Soil | VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERASSLLTRF |
Ga0164306_102569292 | 3300012988 | Soil | VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERASSLLTRFRAWLNR* |
Ga0164305_111520212 | 3300012989 | Soil | VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLSRFRAWLRR* |
Ga0157378_133033762 | 3300013297 | Miscanthus Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRADRPKSLFRRFRAWLLS* |
Ga0157376_127044052 | 3300014969 | Miscanthus Rhizosphere | YWKPKYPTRVMRERAFAKREAARDERLRAERRPSLVARLRDWLRR* |
Ga0132258_104293773 | 3300015371 | Arabidopsis Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKQQAAREERLRAERSPSLLTRLRDWLRR* |
Ga0132258_130168032 | 3300015371 | Arabidopsis Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERSSSLLSRFRAWLRR* |
Ga0132258_137424403 | 3300015371 | Arabidopsis Rhizosphere | LRRRLVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLVSRFRAWLRR* |
Ga0132256_1005773861 | 3300015372 | Arabidopsis Rhizosphere | GLAVPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERPPSLLARFRAWLRR* |
Ga0132256_1010270773 | 3300015372 | Arabidopsis Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERP |
Ga0132257_1000992483 | 3300015373 | Arabidopsis Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERPTSLLARFRAWLRR* |
Ga0132257_1012201471 | 3300015373 | Arabidopsis Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERPPSLLARFRA |
Ga0132255_1017333441 | 3300015374 | Arabidopsis Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERPP |
Ga0132255_1049049981 | 3300015374 | Arabidopsis Rhizosphere | LAVPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERPPSLLARFRAWLRR* |
Ga0184605_100240795 | 3300018027 | Groundwater Sediment | MPRPVYWKPRYPTRVMRERAFAKRQRARDEALRHATGPSLLERLRKLLGRGRE |
Ga0184608_104109402 | 3300018028 | Groundwater Sediment | VRPVYWKPKYPTRVMRERAFAKRQRARDEALRREAGPSLLERLRGRLRRDGA |
Ga0184640_104449621 | 3300018074 | Groundwater Sediment | VPKPVYWKPKYPTRVMRERAFANQQAARDERLRAERPPSLATRLRAWL |
Ga0066667_122591882 | 3300018433 | Grasslands Soil | VSPPVPRPVYWKPKYPTRRMRERAFVKQQLAREESLRAAAPPSLLARFRAWLKR |
Ga0193703_10206921 | 3300019876 | Soil | VYWKPKYPTRVMRERAFAKRQAARDERLRADRPPSLATRLRAWLRR |
Ga0210378_1000198310 | 3300021073 | Groundwater Sediment | MPRPVYWKPRYPTRVMRERAFASRQRARDEALRRPAGPSLLERLRKLLRRGGE |
Ga0222622_100520853 | 3300022756 | Groundwater Sediment | VPKPVYWKPKYPTRVMRERAFAKRQAARDERLRADRPPSLATRLRAWLRR |
Ga0207643_101180253 | 3300025908 | Miscanthus Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKRQAARDDQLRADRPPSLLGRFRAWLLS |
Ga0207661_106949712 | 3300025944 | Corn Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKREAARDERLRAERRPSLVARLRDWLRR |
Ga0207679_108970671 | 3300025945 | Corn Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKQQAAREERLRAGRPPSLLARFRDWLRR |
Ga0207679_117077512 | 3300025945 | Corn Rhizosphere | RRIGLRVSIGVTVPKPVYWKPKYPTRVMRERAFAKREAARDERLRAERRPSLVARLRDWLRR |
Ga0207679_117131142 | 3300025945 | Corn Rhizosphere | VPKPVYWKPKYPTRVMRERAFAKREAARDERLRAERRPSLV |
Ga0207702_108641872 | 3300026078 | Corn Rhizosphere | VPKPIYWKPKYPTRVMRERAFAKQQAAREERLRAGRPPSLLARFRDWLRR |
Ga0209470_12168232 | 3300026324 | Soil | VPVYWKPKYPTRVMRERAFAKQQAARDERLRAERPPSLLARFRAWLRR |
Ga0209220_10745121 | 3300027587 | Forest Soil | LADLHLRRGLVPRPIYWKPKYPTRVMRERAFAKRQRAREEALRASAPPSVLTRFRAWLQR |
Ga0209139_102906322 | 3300027795 | Bog Forest Soil | LNRRPVYWKPKYPTRVMRERAFAKRSLERERQLAATRGPSPFAKLRAWFTRRL |
Ga0209811_100414382 | 3300027821 | Surface Soil | VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERASSLLTRFRAWLHR |
Ga0307311_102105122 | 3300028716 | Soil | PVYWKPKYPTRVMRERAFAKRQVARDERLRAERSPSVLARLRAWLRR |
Ga0307307_101841732 | 3300028718 | Soil | RLVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRADRPPSLFGRFRAWLLS |
Ga0307280_103681512 | 3300028768 | Soil | VPKPVYWKPKYPTRVMRERAFAKRQAARDERLRAERPPSLTERLRAWLRR |
Ga0307320_100055204 | 3300028771 | Soil | MPRPVYWKPRYPTRVMRERAFAKRQRMRDEALRRQAGPSLLDRLRELLRRDGA |
Ga0307288_100451633 | 3300028778 | Soil | VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRADRPPSLFGRFRAWLLS |
Ga0307290_103666962 | 3300028791 | Soil | YWKPRYPTRVMRERAFANRQRARDEALRHATGPSLLERLRKLLGRGRE |
Ga0307305_100080217 | 3300028807 | Soil | DPMPRPVYWKPRYPTRVMRERAFAKRQRARDEALRHATGPSLLERLRKLLGRGRE |
Ga0307289_104631481 | 3300028875 | Soil | MPRPVYWKPKYPTRVMRERAFAKRQLARDERLRAERSPSVLA |
Ga0307278_100439144 | 3300028878 | Soil | MPRPVYWKPRYPTRVMRERAFAKRQRARDEALRHATGPSILERLRKLLGRGRE |
Ga0307278_101102862 | 3300028878 | Soil | MPRPVYWKPRYPTRVMRERAFAKRQRARDEALRRQAGPSLLERLRKRLQRGGE |
Ga0307278_104507771 | 3300028878 | Soil | AVDDPMPRPVYWKPRYPTRVMRERAFAKRQRARDEALRHATGPSLLERLRKLLGRGRE |
Ga0307304_103688381 | 3300028885 | Soil | IPRPVYWKPKYPTRVMRERAFGKRQRARDEALRASSPPSALSRLRDWLRR |
⦗Top⦘ |