NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F097802

Metagenome / Metatranscriptome Family F097802

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F097802
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 50 residues
Representative Sequence VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLSRFRAWLRR
Number of Associated Samples 81
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 45.63 %
% of genes near scaffold ends (potentially truncated) 40.38 %
% of genes from short scaffolds (< 2000 bps) 83.65 %
Associated GOLD sequencing projects 77
AlphaFold2 3D model prediction Yes
3D model pTM-score0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (72.115 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(19.231 % of family members)
Environment Ontology (ENVO) Unclassified
(30.769 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(61.538 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80
1KansclcFeb2_05704740
2JGI10216J12902_1013537123
3JGI10216J12902_1110844082
4JGI10216J12902_1127762233
5Ga0062593_1002106722
6Ga0062593_1023008462
7Ga0062594_1032343572
8Ga0066869_101106411
9Ga0070683_1000385963
10Ga0070683_1001813602
11Ga0066388_1068955271
12Ga0066686_108622011
13Ga0066682_101198763
14Ga0073909_100148953
15Ga0070697_1014881192
16Ga0066701_107994632
17Ga0070664_1009927302
18Ga0066706_103373972
19Ga0066905_1000000467
20Ga0066905_1000164664
21Ga0066905_1001147912
22Ga0068861_1026211122
23Ga0066903_1028695753
24Ga0066903_1057699942
25Ga0081540_13182962
26Ga0070712_1006159722
27Ga0097621_1000746023
28Ga0074051_117840621
29Ga0074055_118702043
30Ga0074059_119504511
31Ga0074059_120833022
32Ga0074054_113237751
33Ga0074054_119904913
34Ga0074062_125032052
35Ga0074062_127218972
36Ga0066660_104067433
37Ga0068865_1011487712
38Ga0075426_114922652
39Ga0074063_136818581
40Ga0066710_1007591051
41Ga0066710_1023250272
42Ga0099830_101581502
43Ga0066709_1019676422
44Ga0075423_127704731
45Ga0105242_108412181
46Ga0126315_101454862
47Ga0126382_111323032
48Ga0134071_105857732
49Ga0126376_103260831
50Ga0126372_116029751
51Ga0126372_133264071
52Ga0137374_110419221
53Ga0137376_100945535
54Ga0137369_100062056
55Ga0137369_1000996811
56Ga0134044_12336022
57Ga0126375_118679431
58Ga0164299_106819722
59Ga0164299_116505901
60Ga0164301_102249972
61Ga0164304_109676872
62Ga0164307_103005211
63Ga0164306_102569292
64Ga0164305_111520212
65Ga0157378_133033762
66Ga0157376_127044052
67Ga0132258_104293773
68Ga0132258_130168032
69Ga0132258_137424403
70Ga0132256_1005773861
71Ga0132256_1010270773
72Ga0132257_1000992483
73Ga0132257_1012201471
74Ga0132255_1017333441
75Ga0132255_1049049981
76Ga0184605_100240795
77Ga0184608_104109402
78Ga0184640_104449621
79Ga0066667_122591882
80Ga0193703_10206921
81Ga0210378_1000198310
82Ga0222622_100520853
83Ga0207643_101180253
84Ga0207661_106949712
85Ga0207679_108970671
86Ga0207679_117077512
87Ga0207679_117131142
88Ga0207702_108641872
89Ga0209470_12168232
90Ga0209220_10745121
91Ga0209139_102906322
92Ga0209811_100414382
93Ga0307311_102105122
94Ga0307307_101841732
95Ga0307280_103681512
96Ga0307320_100055204
97Ga0307288_100451633
98Ga0307290_103666962
99Ga0307305_100080217
100Ga0307289_104631481
101Ga0307278_100439144
102Ga0307278_101102862
103Ga0307278_104507771
104Ga0307304_103688381
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 42.31%    β-sheet: 0.00%    Coil/Unstructured: 57.69%
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Variant

5101520253035404550VPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLSRFRAWLRRSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
72.1%27.9%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Groundwater Sediment
Bog Forest Soil
Groundwater Sediment
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Tropical Forest Soil
Serpentine Soil
Grasslands Soil
Surface Soil
Soil
Soil
Grasslands Soil
Tropical Forest Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
Corn Rhizosphere
Tabebuia Heterophylla Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Populus Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
2.9%19.2%9.6%4.8%4.8%2.9%9.6%3.8%5.8%2.9%6.7%3.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
KansclcFeb2_057047402124908045SoilVPKPVYWKPKYPTRIMRERAFAKRQLARDERLRAEQSPSLAARLRAWLRR
JGI10216J12902_10135371233300000956SoilVPKPVYWKPKYPTRVMRERAFAKQQAAREERLQAERPPSLIARLRDWLRR*
JGI10216J12902_11108440823300000956SoilVPKPIYWKPKYPTRVMRERAFAKQQAGRDERLRADRSPALLTRFRAWLRR*
JGI10216J12902_11277622333300000956SoilVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRADRSPSLLGRFRAWLRR*
Ga0062593_10021067223300004114SoilVPKPVYWKPKYPTRVMRERAFAKRQAAHEERLRAERPPSLVSRFRAWLRR*
Ga0062593_10230084623300004114SoilVPKPVYWKPKYPTRVMRERAFAKQQRARDAKLRAERAPSPLSRFRAWLRR*
Ga0062594_10323435723300005093SoilVPKPVYWKPKYPTRVMRERAFAKRQAARDDQLRADRPPSLLGRFRAWLLS*
Ga0066869_1011064113300005165SoilLGLAVPKPVYWKPKYPTRVMRERAFAKQQAAREARLRAERPPSLLTRFRAWLRR*
Ga0070683_10003859633300005329Corn RhizosphereVPKPVYWKPKYPTRVMRERAFAKREAARDERLRAERRPSLVARLRDWLRR*
Ga0070683_10018136023300005329Corn RhizosphereVPKPVYWKPKYPTRVMRERAFAKQQAAREERLRAGRPPSLLARFRDWLRR*
Ga0066388_10689552713300005332Tropical Forest SoilPVYWKPKYPTRVMRERAFAKRELAREERLRADRPPSLLARFRAWLRS*
Ga0066686_1086220113300005446SoilVPKPVYWKPKYPTRVMRERAFAKRQAARDERLRAERPPSLAARLRAWL
Ga0066682_1011987633300005450SoilVPVYWKPKYPTRVMRERAFAKQQAARDERLRAERPPSLLARFRAWLRR*
Ga0073909_1001489533300005526Surface SoilVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERASSLLTRFRAWLHR*
Ga0070697_10148811923300005536Corn, Switchgrass And Miscanthus RhizosphereVRRPVYWKPAYPTRVMRERAFAKRQRARDEALARERGPSLVQRLRELLRRGGGA*
Ga0066701_1079946323300005552SoilMPRPVIWKPRYPTRVMRERAFAKQQLAREQALEATRPPSLRSRFVAWLKR*
Ga0070664_10099273023300005564Corn RhizosphereVYWKPKYPTRVMRERAFAKQQAAREERLRAGRPPSLLARFRDWLRR*
Ga0066706_1033739723300005598SoilVPRPVYWKPKYPTRRMRERAFVKQQLAREESLRAAAPPSLLARFRAWLKR*
Ga0066905_10000004673300005713Tropical Forest SoilVPKPVYWKPKYPTRVMRERAFAKQQAARDELLRAERPPSLVARFRAWLRR*
Ga0066905_10001646643300005713Tropical Forest SoilVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERPPSLLRRFRDWLRR*
Ga0066905_10011479123300005713Tropical Forest SoilVPRPVYWKPKYPTRVMRERAFAKQQAAREERLRAERPPSLLTRFRAWLRR*
Ga0068861_10262111223300005719Switchgrass RhizosphereVPRPVYWKPKYPTRVMRERAFAKRQSARDERLRAERPPSLATRLRAWLRR*
Ga0066903_10286957533300005764Tropical Forest SoilVPKPVYWKPKYPTRVMRERAFAKRELAREERLRADRPPSLLARFRAWLRS*
Ga0066903_10576999423300005764Tropical Forest SoilVPKPVYWKPKYPTRVMRERAFAKQQAAREERLRAERPPSVVSRFRAWLQR*
Ga0081540_131829623300005983Tabebuia Heterophylla RhizosphereVPKPVYWKPKHPTRVMRERAFAKRQAARDERLRAERPPSLASRLRAWLSR*
Ga0070712_10061597223300006175Corn, Switchgrass And Miscanthus RhizosphereVPKPVYWKPKYPTRVMRERAFAKRELAREERLRADRTPSLFARFRAWLRR*
Ga0097621_10007460233300006237Miscanthus RhizosphereVPKPVYWKPKYPTRVMRERAFAKGQAARDEQLRADRPPSLLGRFRAWLLS*
Ga0074051_1178406213300006572SoilKPVYWKPKYPTRVMRERAFAKRQAARDERLRAERPPSLAARFRDWLRR*
Ga0074055_1187020433300006573SoilVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLTRFRAWLHR*
Ga0074059_1195045113300006578SoilVPKPVYWKPKYPTRVMRERAFAKQQAAREARLRAERPPSLLTRFRAWLLR*
Ga0074059_1208330223300006578SoilYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLTRFRAWLHR*
Ga0074054_1132377513300006579SoilLHLRRRLVPKPVYWKPKYPTRVMRERAFAKRQAARDERLRAERPPSFAVRFLAWLHR*
Ga0074054_1199049133300006579SoilKPVYWKPKYPTRVMRERAFARRQAARDERLRAERPPSLAARFRDWLRR*
Ga0074062_1250320523300006606SoilFEDRVPLGLAVPKPVYWKPKYPTRVMRERAFAKQQAAREARLRAERPPSLLTRFRAWLRR
Ga0074062_1272189723300006606SoilVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLTRFRAWLYR*
Ga0066660_1040674333300006800SoilVRPRPVIWKPRYPTRVMRERAWAKQDLARAEAAEGARKRSRLGRLWARLFRST*
Ga0068865_10114877123300006881Miscanthus RhizosphereVPKPVYWKPKYPTRVMRERAFAKGQAARDERLRAERPPSLATRLRAWLHR*
Ga0075426_1149226523300006903Populus RhizosphereVPKPVYWKPKYPTRVMRERAFAKQQAAREERLRAERPPSFLARFRDWLRR*
Ga0074063_1368185813300006953SoilHPVGLDVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLTRFRAWLYR*
Ga0066710_10075910513300009012Grasslands SoilHLGLPMAPVYWKPRYPTRRMRERAFAKQELARERAIKRSPRHPSWLDRFRDWLRR
Ga0066710_10232502723300009012Grasslands SoilMPRPVIWKPRYPTRVMRERAFAKQQLAREEALKATRPPSLLSRFRAWLRR
Ga0099830_1015815023300009088Vadose Zone SoilVADVPKPIYWKPRYPTRVMRERAFAKRQLAREQALKATRPPSLLSRFRAWLKR*
Ga0066709_10196764223300009137Grasslands SoilMPRPVIWKPRYPTRVMRERAFAKQQLAREEALKATRPPSLLSRFRAWLRR*
Ga0075423_1277047313300009162Populus RhizosphereVPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERPPSLLARFRAWLRR*
Ga0105242_1084121813300009176Miscanthus RhizosphereVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRADRPPSLLGRFRAWLLS*
Ga0126315_1014548623300010038Serpentine SoilMPRPVYWKPRYPTRVMRERVFARRQLARDEALSRQAGPSFLERLRKLLRGGE*
Ga0126382_1113230323300010047Tropical Forest SoilVPKPVYWKPKYPTRVMRERAFAKRQAAREELLRAERPPSLLARFRAWLSR*
Ga0134071_1058577323300010336Grasslands SoilPVYWKPKYPTRVMRERAFAKRQAARDERLRAERPPSLAARLRAWLRR*
Ga0126376_1032608313300010359Tropical Forest SoilAVPKPVYWKPKYPTRVMRERAFAKRELAREERLRADRPPSLLMRFRAWLRR*
Ga0126372_1160297513300010360Tropical Forest SoilVPKPVYWKPKYPTRVMRERAFAKRQAAREERLRAERPPSLVSRFRAWLHR*
Ga0126372_1332640713300010360Tropical Forest SoilVPKPVYWKPKYPTRVMRERAFAKQQAARDERLRAERPPSLLARFRAW
Ga0137374_1104192213300012204Vadose Zone SoilMPRPVYWKPRYPTRVMRERAFAKRQRARDEALRRPAGPSLLERLRKRLRRGGE*
Ga0137376_1009455353300012208Vadose Zone SoilVPPPRPVYWKPRYPTRVMRERAFAKRQLAQEEALRNARG
Ga0137369_1000620563300012355Vadose Zone SoilMPVYWKPRYPTRVMRERAFAKRQRARDEALRRPAGPSLLERLRKRLRRGVNR*
Ga0137369_10009968113300012355Vadose Zone SoilARPDGGTASGALVPRPVYWKPRYPTRVMRERAFAKRQLAREETLHRAGRPSLLRRLRSWLHR*
Ga0134044_123360223300012395Grasslands SoilRLVPRPVIWKPKYPTRVMRERAFAKQQLAREQELRREPRTSPLSRLRAWLGW*
Ga0126375_1186794313300012948Tropical Forest SoilVPKPVYWKPKYPTRVMRERAFAKRQAAREELLRAERPPSLLARFRAW
Ga0164299_1068197223300012958SoilMPKPVYWKPKYPTRVMRERAFAKRQAARDERLRAERSPSLATRLRDWLRT*
Ga0164299_1165059013300012958SoilVPKPVYWKPKYPTRVMRERAFAKQQRARDAKLRAERAPSPLSRFRAWLR
Ga0164301_1022499723300012960SoilVPKPVYWKPKYPTRVMRERAFAKQQRARDAKLRAERAPSL
Ga0164304_1096768723300012986SoilVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSPLSRFRAWLRR*
Ga0164307_1030052113300012987SoilVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERASSLLTRF
Ga0164306_1025692923300012988SoilVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERASSLLTRFRAWLNR*
Ga0164305_1115202123300012989SoilVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLLSRFRAWLRR*
Ga0157378_1330337623300013297Miscanthus RhizosphereVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRADRPKSLFRRFRAWLLS*
Ga0157376_1270440523300014969Miscanthus RhizosphereYWKPKYPTRVMRERAFAKREAARDERLRAERRPSLVARLRDWLRR*
Ga0132258_1042937733300015371Arabidopsis RhizosphereVPKPVYWKPKYPTRVMRERAFAKQQAAREERLRAERSPSLLTRLRDWLRR*
Ga0132258_1301680323300015371Arabidopsis RhizosphereVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERSSSLLSRFRAWLRR*
Ga0132258_1374244033300015371Arabidopsis RhizosphereLRRRLVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERAPSLVSRFRAWLRR*
Ga0132256_10057738613300015372Arabidopsis RhizosphereGLAVPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERPPSLLARFRAWLRR*
Ga0132256_10102707733300015372Arabidopsis RhizosphereVPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERP
Ga0132257_10009924833300015373Arabidopsis RhizosphereVPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERPTSLLARFRAWLRR*
Ga0132257_10122014713300015373Arabidopsis RhizosphereVPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERPPSLLARFRA
Ga0132255_10173334413300015374Arabidopsis RhizosphereVPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERPP
Ga0132255_10490499813300015374Arabidopsis RhizosphereLAVPKPVYWKPKYPTRVMRERAFAKQQAAHDERLRAERPPSLLARFRAWLRR*
Ga0184605_1002407953300018027Groundwater SedimentMPRPVYWKPRYPTRVMRERAFAKRQRARDEALRHATGPSLLERLRKLLGRGRE
Ga0184608_1041094023300018028Groundwater SedimentVRPVYWKPKYPTRVMRERAFAKRQRARDEALRREAGPSLLERLRGRLRRDGA
Ga0184640_1044496213300018074Groundwater SedimentVPKPVYWKPKYPTRVMRERAFANQQAARDERLRAERPPSLATRLRAWL
Ga0066667_1225918823300018433Grasslands SoilVSPPVPRPVYWKPKYPTRRMRERAFVKQQLAREESLRAAAPPSLLARFRAWLKR
Ga0193703_102069213300019876SoilVYWKPKYPTRVMRERAFAKRQAARDERLRADRPPSLATRLRAWLRR
Ga0210378_10001983103300021073Groundwater SedimentMPRPVYWKPRYPTRVMRERAFASRQRARDEALRRPAGPSLLERLRKLLRRGGE
Ga0222622_1005208533300022756Groundwater SedimentVPKPVYWKPKYPTRVMRERAFAKRQAARDERLRADRPPSLATRLRAWLRR
Ga0207643_1011802533300025908Miscanthus RhizosphereVPKPVYWKPKYPTRVMRERAFAKRQAARDDQLRADRPPSLLGRFRAWLLS
Ga0207661_1069497123300025944Corn RhizosphereVPKPVYWKPKYPTRVMRERAFAKREAARDERLRAERRPSLVARLRDWLRR
Ga0207679_1089706713300025945Corn RhizosphereVPKPVYWKPKYPTRVMRERAFAKQQAAREERLRAGRPPSLLARFRDWLRR
Ga0207679_1170775123300025945Corn RhizosphereRRIGLRVSIGVTVPKPVYWKPKYPTRVMRERAFAKREAARDERLRAERRPSLVARLRDWLRR
Ga0207679_1171311423300025945Corn RhizosphereVPKPVYWKPKYPTRVMRERAFAKREAARDERLRAERRPSLV
Ga0207702_1086418723300026078Corn RhizosphereVPKPIYWKPKYPTRVMRERAFAKQQAAREERLRAGRPPSLLARFRDWLRR
Ga0209470_121682323300026324SoilVPVYWKPKYPTRVMRERAFAKQQAARDERLRAERPPSLLARFRAWLRR
Ga0209220_107451213300027587Forest SoilLADLHLRRGLVPRPIYWKPKYPTRVMRERAFAKRQRAREEALRASAPPSVLTRFRAWLQR
Ga0209139_1029063223300027795Bog Forest SoilLNRRPVYWKPKYPTRVMRERAFAKRSLERERQLAATRGPSPFAKLRAWFTRRL
Ga0209811_1004143823300027821Surface SoilVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRAERASSLLTRFRAWLHR
Ga0307311_1021051223300028716SoilPVYWKPKYPTRVMRERAFAKRQVARDERLRAERSPSVLARLRAWLRR
Ga0307307_1018417323300028718SoilRLVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRADRPPSLFGRFRAWLLS
Ga0307280_1036815123300028768SoilVPKPVYWKPKYPTRVMRERAFAKRQAARDERLRAERPPSLTERLRAWLRR
Ga0307320_1000552043300028771SoilMPRPVYWKPRYPTRVMRERAFAKRQRMRDEALRRQAGPSLLDRLRELLRRDGA
Ga0307288_1004516333300028778SoilVPKPVYWKPKYPTRVMRERAFAKRQAARDEQLRADRPPSLFGRFRAWLLS
Ga0307290_1036669623300028791SoilYWKPRYPTRVMRERAFANRQRARDEALRHATGPSLLERLRKLLGRGRE
Ga0307305_1000802173300028807SoilDPMPRPVYWKPRYPTRVMRERAFAKRQRARDEALRHATGPSLLERLRKLLGRGRE
Ga0307289_1046314813300028875SoilMPRPVYWKPKYPTRVMRERAFAKRQLARDERLRAERSPSVLA
Ga0307278_1004391443300028878SoilMPRPVYWKPRYPTRVMRERAFAKRQRARDEALRHATGPSILERLRKLLGRGRE
Ga0307278_1011028623300028878SoilMPRPVYWKPRYPTRVMRERAFAKRQRARDEALRRQAGPSLLERLRKRLQRGGE
Ga0307278_1045077713300028878SoilAVDDPMPRPVYWKPRYPTRVMRERAFAKRQRARDEALRHATGPSLLERLRKLLGRGRE
Ga0307304_1036883813300028885SoilIPRPVYWKPKYPTRVMRERAFGKRQRARDEALRASSPPSALSRLRDWLRR


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