Metagenome / Metatranscriptome Family F097778

Basic Information
Family ID	F097778
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	41 residues
Representative Sequence	HELATQLGTVLEWQAGGRSFVLAGSLPPAAAEAAARELK
Number of Associated Samples	94
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (12.500 % of family members)
Environment Ontology (ENVO)	Unclassified (21.154 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.038 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 16.42% β-sheet: 25.37% Coil/Unstructured: 58.21%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00005	ABC_tran	89.42
PF12730	ABC2_membrane_4	2.88
PF13374	TPR_10	0.96
PF09754	PAC2	0.96
PF01987	AIM24	0.96
PF14579	HHH_6	0.96
PF04228	Zn_peptidase	0.96
PF07991	IlvN	0.96
PF12399	BCA_ABC_TP_C	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0059	Ketol-acid reductoisomerase	Amino acid transport and metabolism [E]	1.92
COG0499	S-adenosylhomocysteine hydrolase	Coenzyme transport and metabolism [H]	0.96
COG2013	AIM24 protein, required for mitochondrial respiration	Energy production and conversion [C]	0.96
COG2321	Predicted metalloprotease	General function prediction only [R]	0.96

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.50%
Host-Associated	Host-Associated	11.54%
Engineered	Engineered	0.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.54%
Plants	Host-Associated → Plants	11.54%
Aquatic	Environmental → Aquatic	0.96%
Solid Waste	Engineered → Solid Waste	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.58%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.88%
Sediment	Environmental → Aquatic → Sediment	0.96%
Peat	Environmental → Terrestrial → Peat	0.96%
Grass	Engineered → Solid Waste → Grass	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.42%
Loam	Environmental → Terrestrial → Soil → Loam	15.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.96%
Composting	Engineered → Solid Waste → Grass → Composting	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	17.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.73%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.77%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.96%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.54%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.96%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.96%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.96%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.96%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459017	Litter degradation ZMR4	Engineered	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005887	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010862	Boreal forest soil eukaryotic communities from Alaska, USA - C4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011987	Permafrost microbial communities from Nunavut, Canada - A20_80cm_0M	Environmental	Open in IMG/M
3300011997	Permafrost microbial communities from Nunavut, Canada - A15_80cm_18M	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012513	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300024254	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK02	Environmental	Open in IMG/M
3300025544	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300029990	I_Fen_N2 coassembly	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033758	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SR_A	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4ZMR_04500090	2170459017	Switchgrass, Maize And Mischanthus Litter	MTGVAARSLDGVTAHELATPLGTVLGWRSGGTSTCSPDPVPPAAAEAAAQAVK
Ga0066677_104471592	3300005171	Soil	GLTGHELATQLGTAIEWTRNGVSFVLAGSLPPAAAESAARALK*
Ga0066683_101231961	3300005172	Soil	TAHELATQLGTAITWNSGGTSYLLAGSLPPAAAEAAARAVK*
Ga0066678_110322231	3300005181	Soil	HELATQLGTVLGWQRNGVDFVLAGSLPPAAAETAARDLGK*
Ga0066675_112716952	3300005187	Soil	TLDGVTAHELTTQLGTILTWDRGSVSYVLAGSVPSSAAEAAARALK*
Ga0070673_1014652601	3300005364	Switchgrass Rhizosphere	SISLDGATAHELATQLGTVLTWDRAGVSYVLAGSVPSSAAEAAARALR*
Ga0070706_1018054012	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	HELATQLGTVLTWDRSGVSYVLAGSLPPAAAEAAARSLK*
Ga0070707_1003876603	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	TAHELATQLGTVLEWQEGGRSFVLGGSLPPAAAESAARELK*
Ga0070741_100181081	3300005529	Surface Soil	ELATQLGTVLEWQRGGTSFLLAGSLPPAAAESAARELG*
Ga0070741_104378991	3300005529	Surface Soil	LSTQLGTILTWDKGGVTYVLAGSVPSAAAEAAARAIG*
Ga0066701_100662781	3300005552	Soil	HELATQLGTVLEWQQGGRSFVLAGSLPPAAAESAARELK*
Ga0066692_102116211	3300005555	Soil	LPSVSLDGVTAHELATQLGTVLGWDRGGVSYVLAGSIPTAAAESAARSLK*
Ga0066692_104230612	3300005555	Soil	LNGVTAHELATQLGTVLEWQQGGRSFVLAGSLPPAAAESAARELK*
Ga0066704_106686422	3300005557	Soil	LDGLTGHELATQLGTAIQWRRNGVSFILAGSLPPAAAESAARALK*
Ga0066706_109701732	3300005598	Soil	GHELATQLGTAIEWQRNGVSFVLAGSLPPAAAESAARALK*
Ga0075292_10489071	3300005887	Rice Paddy Soil	STQLGTILTWRRAGVDFVLAGSQPAAAAEAAARVLG*
Ga0070717_117391632	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LATQLGTVLEWQRDGTAYVLAGSLPAAAGEAAARQLK*
Ga0075028_1002997401	3300006050	Watersheds	LATALGTVIEWKNGGVDYVLAGSLPSAAAEAAARTLK*
Ga0070712_1012641592	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	TAHELATQLGTVLEWQSQGTGFVLAGSLPPAAAEAAARAVK*
Ga0074060_119438721	3300006604	Soil	VSLDGLTGHELATQLGTAIEWQRNGVSFVLAGSLPPAAAESAARALR*
Ga0074062_124974662	3300006606	Soil	VSLNGVTAHELATQLGTVIEWQQGGHSFVLAGSLPPTAAEAAARELK*
Ga0075433_106182572	3300006852	Populus Rhizosphere	TAHELSTQLGTILTYRDGDVDYVVAGSVPRSAAEAAARQLR*
Ga0075425_1021226252	3300006854	Populus Rhizosphere	TQLGTALQWRRRGVEFVLAGSVPPAAAEAAARDLR*
Ga0075434_1012560442	3300006871	Populus Rhizosphere	AHEFATQLGTIVTWQRAGVSTTLAGSVPAAAAEAAARELR*
Ga0075424_1005572841	3300006904	Populus Rhizosphere	ATQLGTLLAWQANGTAYVLGGSLPPAAAEAAARALR*
Ga0066709_1012525692	3300009137	Grasslands Soil	VTAHELATQLGTVLGWERGGVQFVLVGSLPSAAAESAARTLK*
Ga0111538_119696101	3300009156	Populus Rhizosphere	SAHELSTQLGTLIQWQRGGTSYVVAGSMPAAAAEAAARQLK*
Ga0105242_132242451	3300009176	Miscanthus Rhizosphere	TQLGTVVEWQRGGVAFVLAGSVPSATAETAARNFT*
Ga0134063_105753952	3300010335	Grasslands Soil	VALGSATGHELATELGTVLLFDRAGVTFVLAGSMPPAAPEAAARGLLG*
Ga0126383_125481752	3300010398	Tropical Forest Soil	TQLGTILEWQRDGVAFVLAGSLPPAAAETAARELE*
Ga0126348_11656491	3300010862	Boreal Forest Soil	ITGLPTVSLNGVTAHELATQLGTVVEWSQGGTGFVLAGSLPPAAAESAARELK*
Ga0120164_10465931	3300011987	Permafrost	LDGVTGHELATQLGTIIQWERGGVSYVLAGSLPPAAAQEAARNLK*
Ga0120162_100007248	3300011997	Permafrost	LAGVTAHELATQLGTVLGWDSGQVSFVLAGSLPSGAAEAAARALK*
Ga0137381_104179343	3300012207	Vadose Zone Soil	HELATQLGTVLEWQAGGRSFVLAGSLPPAAAEAAARELK*
Ga0137376_103634303	3300012208	Vadose Zone Soil	LNGVTAHELATQLGTVLEWQAGGRSFVLAGSLPPAAAESAARELK*
Ga0137384_108098831	3300012357	Vadose Zone Soil	TELGTVLAWDRGGVSYILAGSVPSAAAEAAARGLK*
Ga0157315_10094541	3300012508	Arabidopsis Rhizosphere	AHELATQLGTVLSWQANGTAFVLGGSLPPAAAEAAARALR*
Ga0157326_10370891	3300012513	Arabidopsis Rhizosphere	ITAHELATQLGTVLSWQANGTAFVLGGSLPPAAAEAAARALR*
Ga0137398_106732421	3300012683	Vadose Zone Soil	TQLGTVVEWSQSGTGFVLAGSLPPAAAESAARELK*
Ga0137394_100835381	3300012922	Vadose Zone Soil	GHELATQLGTAIEWQRNGVSFVIAGSLPPAAAESAARALK*
Ga0137359_111678792	3300012923	Vadose Zone Soil	LATQLGTVIEWQHSGVAYVLAGSLPPAAAEAAARELK*
Ga0164298_109859891	3300012955	Soil	TQLGTVLEWQAGGRSFVLAGSLPPAAAESAARELK*
Ga0164299_104231842	3300012958	Soil	QELATQLGTVLTWKRGEVAYVLAGSMPPAAAEAAARGLG*
Ga0126369_106532453	3300012971	Tropical Forest Soil	ENVLTNLPEVSLGGISAHELSTQLGTILAWRQGGVESVLVGSVPAATAEAAARELAP*
Ga0134087_104118101	3300012977	Grasslands Soil	QLGTVVTWQRDGVGYVLAGSLPPAAAEAAARDLK*
Ga0134087_104590771	3300012977	Grasslands Soil	ELATQLGTVLEWQEGGRAFVLAGSLPPAAAESAARELK*
Ga0164304_115050922	3300012986	Soil	SLGGTTAHELSTQLGTVLGWDEGQVSFVLAGSLPSGAAESAARALR*
Ga0164305_113921922	3300012989	Soil	SLSGITAHELVTQLGTVLTWDRGGVTYILAGSLPSGAAEAAATAIG*
Ga0163162_124096961	3300013306	Switchgrass Rhizosphere	ATQLGTALQWRRRGVEFVLAGSVPPAAAEAAARDLR*
Ga0137409_110510231	3300015245	Vadose Zone Soil	QLGTVLFFDRNRVSFVLAGSMPPTAAEMAARSLG*
Ga0137403_106709541	3300015264	Vadose Zone Soil	VTAHELATQLGTVVEWSQGGTGFVLAGSLPPAAAESAARELK*
Ga0132256_1006276533	3300015372	Arabidopsis Rhizosphere	GVTAHELATQLGTVLEWQRDGTSYVVAGSLPAAAAEAAGRQLLK*
Ga0134074_11562401	3300017657	Grasslands Soil	LATQLGTVLTWKRGEVAYVLAGSVPPAAAEAAARALG
Ga0187785_105964972	3300017947	Tropical Peatland	ITAHELATQLGTAIEWHEGGTAYVLAGSLPPAAAEAAARQLK
Ga0187776_112847552	3300017966	Tropical Peatland	ELATQLGTILTWQAGGTSFVLAGSLPASAAETAARAVK
Ga0187780_106471842	3300017973	Tropical Peatland	VTAHELPTQLGTVLGWDRGDVSFVLAGSVPTSAAEAAARALG
Ga0187773_111093081	3300018064	Tropical Peatland	HELSTQLGTVLQWNAGGTNFVLAGSLPAAAAETAARAVK
Ga0066667_111148801	3300018433	Grasslands Soil	TVARDGWTGHELATQLGTAIQWTRDGVSYVLVGSLPPAAAESAARALK
Ga0066667_112701672	3300018433	Grasslands Soil	AVTLDGVTAHELATQLGTILTWDNGNVTYLLAGSVPSSAAEAAARALK
Ga0066667_114949922	3300018433	Grasslands Soil	ATQLGTVVLFQQAGVSYVLAGSLPPAAAEAAARALQ
Ga0066667_120600621	3300018433	Grasslands Soil	HELATQLGTVLEWQRGGVDYVLAGSLPPGAAEAAARALR
Ga0066662_114076991	3300018468	Grasslands Soil	TAHELATQLGTVLEWQTGGTSYVLAGSLPTAAAEAAARAVK
Ga0193699_101777021	3300021363	Soil	LATQLGTVLTWDRAGVTYVLAGSLPSSAAEAAATAIG
Ga0210397_115121591	3300021403	Soil	GVTAHEVSTQLGTVLSWDRGGVTYVLAGSVATTAAESAARALG
Ga0247661_10670332	3300024254	Soil	HELATQLGTALTWRKGGVSFVLAGSVPPAAAEAAARALG
Ga0208078_10186153	3300025544	Arctic Peat Soil	TQLGTVLEWQQGGRSLVLAGSLPPAAAESAARELK
Ga0207699_112269312	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	TQLGTVLTWKRGEVDYVLAGSVPPAAAEAAARALG
Ga0207663_115431011	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	TQLGTAIQWTRDGVSFVLVGSLPPAAAESAARALK
Ga0207663_117234332	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	ATQLGTVLTWDRACVTYVLAGSLPPAAAEAAARSLR
Ga0207646_101705313	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	ATQLGTVIAWQREGVAYVLAGSLPPAAAEAAARNLK
Ga0207700_103767311	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LDGLQGHELATQLGTAIQWTRNGVSFVLVGSLPPAAAESAARALK
Ga0207700_111204591	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LATQLGTVLEWQSQGTGFVLAGSLPPAAAEAAARAVK
Ga0207700_119829422	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	DGVTAHELSTQLGTVLSWDAGQASYVLAGSLPSGAAESAARALK
Ga0207664_112095632	3300025929	Agricultural Soil	ATQLGTILTWDAGGVSYVLAGSVPAAAAESAARALR
Ga0207665_105960731	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	TGHELATQLGTILTWDRGGVSYILAGSVPSSAAEAAARGL
Ga0207661_106277461	3300025944	Corn Rhizosphere	YELSTQLGTILSWDSGGVSYVLAGSVPATAAESAARTLK
Ga0209801_11330371	3300026326	Soil	ATQLGTALEWQRNGVSFVLAGSLPPAAAESAARSLK
Ga0209804_12705801	3300026335	Soil	GLPTVSLDGLTGHELATQLGTAIEWTRNGVSFVLAGSLPPAAAESAARALK
Ga0209808_11932082	3300026523	Soil	LPTVSLNGVTAHELATQLGTVLEWQEGGRAFVLAGSLPPAAAESAARELK
Ga0209059_10309292	3300026527	Soil	VTAHELATQLGTVLQWQDAGTSIVLAGSLPSAAAEAAARQLK
Ga0209073_103932142	3300027765	Agricultural Soil	HELATQLGTAIEWKRNGVAFVLVGSLPPAAAESAARALK
Ga0209465_105403072	3300027874	Tropical Forest Soil	ELATQLGTALQWRRAGVEYVLAGSVPAAAAEAAARDLR
Ga0207428_101596593	3300027907	Populus Rhizosphere	IDGLTAHELATQLGTVIAWQSGGTSFVLAGSRARAAAVAAARALK
Ga0307292_104635992	3300028811	Soil	KVSLDGVTGHELATELGTALRWERDGVGYVLAGSLPASAAEAAARSLK
Ga0307312_101662601	3300028828	Soil	TQLGTLIEWQRGGVTFVLAGSVPSAKAETAARDVQ
Ga0311336_107243852	3300029990	Fen	TQLGTIVTWQHAGVSTTLAGSIPSAAAEAAARELG
Ga0307468_1010638682	3300031740	Hardwood Forest Soil	DGLKGHELATQLGTAVQWTRNGVSFVLAGSLPPAAAESAARALK
Ga0318517_100174521	3300031835	Soil	TQLGTILAWQSGGTSFVLAGSQPAAAAEAAARAVK
Ga0318512_107291571	3300031846	Soil	LDGVSAHELATELGTVLQWQSGGTTFVLAGSQPPAAAEAAARAVK
Ga0318536_105459422	3300031893	Soil	LPTVSLDGLTAHELATQLGTVLEWQSGGTSYVLAGSLPASATETAARAVK
Ga0318520_103157551	3300031897	Soil	AHELATQLGTVLEWESNGTRFILAGSLPASAAEAAARDVK
Ga0318520_108022371	3300031897	Soil	LPTVSLDGLTAHELSTQLGTVLAWDAGGTSFVLAGSLPASAAEAAARAVK
Ga0308175_1021342011	3300031938	Soil	LSGITAHELATQLGTVLTWDRGGVSYILAGSLPSSAAEAAAAAIG
Ga0308174_115001652	3300031939	Soil	VTAHELATQLGTVLGWNRAGVTYVLAGSIPSSAAEAAARALR
Ga0318563_103942371	3300032009	Soil	TQLGTVLEWESNGTRFILAGSLPASAAEAAARDVK
Ga0318507_102021102	3300032025	Soil	LTAHELATQLGTILAWQSGGTSFVLAGSQPAAAAEAAARAVK
Ga0318559_105804152	3300032039	Soil	TFSVNGVTAHELATQLGTVLTWDKGGVTYILAGSVPSSAAEAAATALTK
Ga0318553_103765521	3300032068	Soil	SLDGVSAHELATELGTVLQWQSGGTTFVLAGSQPPAAAEAAARAVK
Ga0306924_123666442	3300032076	Soil	TVHELATQLGTVLDWSSGGASFVLAGSLSAADAEAAARTVK
Ga0318525_102686811	3300032089	Soil	GLTAHELATQLGTILAWQSGGTSFVLAGSQPAAAAEAAARAVK
Ga0307472_1004751551	3300032205	Hardwood Forest Soil	VSLDGLTGHELATQLGTALEWQRNGVSFVLAGSLPPAAAESAARSLK
Ga0306920_1023811242	3300032261	Soil	DGLTAHELATQLGTALEWQSGGTSYVLAGSLPAAAAEAAARAVR
Ga0314868_013822_2_136	3300033758	Peatland	NGITAHELATQLGTAIEWHDGGTAYVLAGSLPPAAAEAAARQLK
Ga0372943_0974578_423_563	3300034268	Soil	SLDGVTAHELSTQLGTALAWDRGGVSYVLAGSVPSSAAEAAARSLK

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097778

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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