Metagenome / Metatranscriptome Family F097768

Overview

Basic Information

• Family ID: F097768
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 104
• Average Sequence Length: 51 residues
• Representative Sequence: LRGRDAVVGLYQAWEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRAAVRP
• Number of Associated Samples: 92
• Number of Associated Scaffolds: 104

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 2.88 %
• % of genes near scaffold ends (potentially truncated): 96.15 %
• % of genes from short scaffolds (< 2000 bps): 98.08 %
• Associated GOLD sequencing projects: 87
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (71.154 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.038 % of family members)
• Environment Ontology (ENVO): Unclassified (35.577 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (43.269 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 48.75%
  β-sheet: 0.00%
  Coil/Unstructured: 51.25%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00440	TetR_N	25.96
PF08327	AHSA1	10.58
PF07690	MFS_1	4.81
PF14534	DUF4440	1.92
PF07883	Cupin_2	0.96
PF13432	TPR_16	0.96
PF00583	Acetyltransf_1	0.96
PF13474	SnoaL_3	0.96
PF00999	Na_H_Exchanger	0.96
PF13398	Peptidase_M50B	0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.96
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.96
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.96
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.96
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.96

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.15 %
Unclassified	root	N/A	28.85 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.15 %
Unclassified	root	N/A	28.85 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.15 %
Unclassified	root	N/A	28.85 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	54.81 %
Unclassified	root	N/A	28.85 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	52.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.96 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.96 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.96 %
Unclassified	root	N/A	28.85 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	47.12 %
Candidatus Melainabacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Candidatus Melainabacteria	0.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.96 %
Unclassified	root	N/A	28.85 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.96 %

Level 7

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Jatrophihabitantales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales	2.88 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	7.69 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	5.77 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.96 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.96 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.96 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.92 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3.85 %
Unclassified	root	N/A	28.85 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	6.73 %
unclassified Candidatus Melainabacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Candidatus Melainabacteria → unclassified Candidatus Melainabacteria	0.96 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.96 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.73 %
Candidatus Melainabacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Candidatus Melainabacteria → unclassified Candidatus Melainabacteria → Candidatus Melainabacteria bacterium	0.96 %
Cellulomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae	7.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.96 %
Jatrophihabitantaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae	2.88 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	5.77 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.96 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.96 %
Sagittula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Sagittula	0.96 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.92 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	2.88 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.96 %
Unclassified	root	N/A	28.85 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.73 %
Candidatus Melainabacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Candidatus Melainabacteria → unclassified Candidatus Melainabacteria → Candidatus Melainabacteria bacterium	0.96 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	7.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.96 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → environmental samples	0.96 %
Jatrophihabitans	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans	2.88 %
Planosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Planosporangium	5.77 %
Saccharothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharothrix	0.96 %
Sagittula stellata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Sagittula → Sagittula stellata	0.96 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.92 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	2.88 %
Unclassified	root	N/A	28.85 %

Level 10

Name	Rank	Taxonomy	Distribution
Actinomadura madurae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	0.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.73 %
Candidatus Melainabacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Candidatus Melainabacteria → unclassified Candidatus Melainabacteria → Candidatus Melainabacteria bacterium	0.96 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	7.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.96 %
Jatrophihabitans telluris	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → Jatrophihabitans telluris	2.88 %
Planosporangium flavigriseum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Planosporangium → Planosporangium flavigriseum	5.77 %
Saccharothrix syringae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharothrix → Saccharothrix syringae	0.96 %
Sagittula stellata E-37	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Sagittula → Sagittula stellata → Sagittula stellata E-37	0.96 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.92 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	2.88 %
Unclassified	root	N/A	28.85 %
uncultured Nocardioidaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → environmental samples → uncultured Nocardioidaceae bacterium	0.96 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2040502001|FACENC_GAMC6GA01AOVPH	Not Available	511
2189573001|GZR05M102J0SRQ	Not Available	522
2199352024|deeps__Contig_196957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	604
3300005330|Ga0070690_100377399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → Jatrophihabitans telluris	1036
3300005332|Ga0066388_100599418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1724
3300005341|Ga0070691_10885239	Not Available	550
3300005436|Ga0070713_101633943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → Jatrophihabitans telluris	625
3300005436|Ga0070713_102145189	Not Available	541
3300005437|Ga0070710_10824056	All Organisms → cellular organisms → Bacteria	664
3300005471|Ga0070698_101493630	Not Available	627

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.88%
Host-Associated	Host-Associated	22.12%

Class

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	22.12%
Terrestrial	Environmental → Terrestrial	77.88%

Category

Habitat	Taxonomy	Distribution
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.58%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.54%
Soil	Environmental → Terrestrial → Soil	77.88%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.65%
Loam	Environmental → Terrestrial → Soil → Loam	17.31%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.92%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.77%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.92%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.04%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.73%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2040502001	Soil microbial communities from sample at FACE Site 2 North Carolina CO2+	Environmental
2189573001	Grass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml)	Environmental
2199352024	Bare-fallow DEEP SOIL	Environmental
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCE_1030360	2040502001	Soil	RRRNLRGRDAVVRLYQAWDPVVSELFDRYPFPKLMVPDPHHDWPASLRAICAAVRP
FD2_01309530	2189573001	Grass Soil	VRLYQAWEPVVGELYDRYPFPKLMVPDPQHDWPAAMRSIRAAIRP
deeps_03764380	2199352024	Soil	VGPPPRLRGRDAVVGLYQAWEPVAAELFDRYPFGKLMVPDPQHDWPAAL
Ga0070690_1003773994	3300005330	Switchgrass Rhizosphere	AWEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRAAVRP*
Ga0066388_1005994181	3300005332	Tropical Forest Soil	YQAWEPVVSQLYDRYPFGKLMVPDPRHDWPAALQTIYAAVRP*
Ga0070691_108852393	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	DSPWARRRGLRGRDAVVGLYQAWEPVAVELFDRYPFGKLMLPDPQHDWPSALRAVRAAVRP*
Ga0070713_1016339433	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LYRAWEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRAAVRP*
Ga0070713_1021451891	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	WARRRGLRGRDAVVGLYQAWEPVAVELFDRYPFGKLMLPDPQHDWPSALRAVRAAVRP*
Ga0070710_108240563	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	RRGLRGRDAVVGLYQAWEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRAAVRP*
Ga0070698_1014936301	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	YQAWDPVVRELFDRYPFPKLMVPNPHHDWPGSLHAICTALRP*
Ga0070733_107759711	3300005541	Surface Soil	HDAVVRLYQAWEPVVTRLYRRYPFPKITVTDPQRDWPEALARICAAVRPSAANPS*
Ga0070693_1016668971	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	NLRGRDAVVRLYQAWDPVVSELFDRYPFPKLMVPDPHHDWPASLRAICAAVRP*
Ga0068856_1009916452	3300005614	Corn Rhizosphere	RRRGLRGRDAVVGLYQAWEPVAAELFDRYPFGKLMVPDPHYDWPSALRAIRAAVRP*
Ga0068852_1003519871	3300005616	Corn Rhizosphere	YRAWEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRAAVRP*
Ga0068861_1015328451	3300005719	Switchgrass Rhizosphere	LRGRDAVVGLYQAWEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRAAVRP*
Ga0066903_1022664013	3300005764	Tropical Forest Soil	HRNLRGRDAVVRLYQAWEPVVSQLYGRYPFGKLMVPDPQHDWQAALRAICAAVRP*
Ga0066903_1030684122	3300005764	Tropical Forest Soil	AFVENSPWARRRNLRGRDAVVRLYQAWEPMVSQLYDRYPFGKLMVFDPRHDWPAALQTIYAAVRP*
Ga0068863_1011758612	3300005841	Switchgrass Rhizosphere	AFVQDSPWARRRDLRGRDAVVGLYRAWEPVAAELFDRYPFGKLMVPDPHYDWPSALRAIRAAVRP*
Ga0068858_1024407982	3300005842	Switchgrass Rhizosphere	AWEPVAAELFDRYPFGKLMVPDPQHDWSSALRAIRAAVRP*
Ga0070717_108164511	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LRGRDAVVGLYRAWEPVAAELFDRYPFGKLMVPDPHYDWPSALRAIRAAVRP*
Ga0070717_119377553	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LYQAWEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRAAVRP*
Ga0066652_1014626731	3300006046	Soil	PWARRRDLRGRDAVVGLYQAWEPVAAGLFDRYPFGKLMLPDPQHDWPAALRALRAAVRP*
Ga0070712_1015334633	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	AFVQDSPWARRRDLRGRDAVVGLYQAWEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRTAVRP*
Ga0074053_120105453	3300006575	Soil	VGLYQAWEPVAARLFDQYPFGKLMVPDPQHDWPATLRVIRAAVRP*
Ga0079219_102277162	3300006954	Agricultural Soil	VQDSPWARCRGLRGRDAVVGLYRAWEPVAAELFDRYPFGKLMVPDPHYDWPSALRAIRAAVRP*
Ga0075435_1009979931	3300007076	Populus Rhizosphere	DAVVGLYQAWEPLAAELFDRYPFGKLMLSDPQHDWPAALRAVRAAVRP*
Ga0066710_1032303862	3300009012	Grasslands Soil	AVVQLYQAWEPVVSRLYDRYPFPKLMVPDPQHDWPAALRNICAAVRP
Ga0105245_127133743	3300009098	Miscanthus Rhizosphere	VGLYRAWEPVAVELFDRYPFGKLMLPDPQHDWPSALRAVRAAVRP*
Ga0105237_110770242	3300009545	Corn Rhizosphere	AWEPVAAELFDRYPFGKLMVPDPHYDWPSALRAIRAAVRP*
Ga0099796_103053571	3300010159	Vadose Zone Soil	DCLWARRRNLRGRDAVVQLYQAWEPVATRLYDRYPFPKLMVPDPQHDWPAALRAIRTAVRP*
Ga0134084_104636991	3300010322	Grasslands Soil	LHQAWEPVASQLYDRYPFGKLVVPDPHHDWPAALRTIRAAVRS*
Ga0134064_104811741	3300010325	Grasslands Soil	LRGRDAVVQLHQAWEPVASQLYDRYPFGKLVVPDPHHDWPAALRTIRAAVRS*
Ga0126378_105729442	3300010361	Tropical Forest Soil	VQLYQAWEPVVSQLYDGYPFPKLTVPDPHHDWPATLRVICAAVRP*
Ga0134125_111770511	3300010371	Terrestrial Soil	VGLYRAWEPVAAELFDRYPFGKLMVPDPHYDWPSALRAIRAAVRP*
Ga0134125_117498201	3300010371	Terrestrial Soil	RRHGLRGRDAVVGLYQAWEPAAARLYDRYPFGKLMVPDPQHDWPAALRAIRTAVRP*
Ga0137383_109061392	3300012199	Vadose Zone Soil	AVVRLYQAWEPVVSELYIQYPFPKLMVRDPHHDWPASLHHICAAVRP*
Ga0137378_104575191	3300012210	Vadose Zone Soil	SRNVAFVENSRWARCRNLRGQDAVAQLYQAWEAVVSQLYGRYSFPKLLVTDPQDDWPAAMTRICAAVRP*
Ga0137387_106250682	3300012349	Vadose Zone Soil	LRGRDAVVRLYQAWEPMVSRLYDRYPFPKLMVPDPQHDWPAALRAICAAVRP*
Ga0137371_114141181	3300012356	Vadose Zone Soil	LRGRDAVVQLYQAWEPVVSRLYDRYPFPKLMVPDPQHDWPAALRNICAAVRP*
Ga0137410_110122522	3300012944	Vadose Zone Soil	VSELFDRYPFPKLMVPDPHHDWPASLRAICAAVRP*
Ga0126369_123386171	3300012971	Tropical Forest Soil	VVRLYQAWEPVVSQLYDRYPFGKLVVPDPQLNWPAALHTICAAARP*
Ga0164308_113511301	3300012985	Soil	AVIALYQAWEDVVNLLYDQYPFGKLMLTDPQHDWPAALTRIGAAVRP*
Ga0157369_108031232	3300013105	Corn Rhizosphere	RGRDAVVGLYRAWEPVAAELFDRYPFGKLMVPDPHYDWPSALRAIRAAVRP*
Ga0157369_123799921	3300013105	Corn Rhizosphere	RDAVVRLYQAWNPVVSELFDRYPFPKLMVPDPHHDWPASLRAICAALRP*
Ga0157372_112942902	3300013307	Corn Rhizosphere	LYRAWEPVAAELFDRYPFGKLMVPDPHYDWPSALRAIRAAVRP*
Ga0157379_104155004	3300014968	Switchgrass Rhizosphere	WEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRAAVRP*
Ga0137412_104853912	3300015242	Vadose Zone Soil	VQDSPWARRRDLRGRDAVVGLYQAWEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRAAVRP*
Ga0132256_1017758601	3300015372	Arabidopsis Rhizosphere	VVSQLYDRYPFGKLMVPDPQHDWTAALLAIYAAVRP*
Ga0206353_105439741	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	RDLRGRDAVVGLYRAWEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRAAVRP
Ga0210406_109333001	3300021168	Soil	LRGLDAVVRLYQAWEPVVGELYDRYPFPRLMVPDPHHDWPAALRAIRAAVRP
Ga0210384_106170951	3300021432	Soil	RNLRGRDAVIRLYQAWEPVASQLYDRYPFPKLMVPDPHHDWPAALHRICTAVRP
Ga0210410_101989853	3300021479	Soil	RRRNLRGRDAVVRLYQAWDPVVSELFDRYPFGKLMVPDPHHDWPASLRAICAAVRP
Ga0210409_103215581	3300021559	Soil	RGRDAVVRLYQAWDPVASELFDRYPFGKLMVPDPHHDWPASLRAICTAVRP
Ga0126371_129292981	3300021560	Tropical Forest Soil	QDAVVGLYRQWEAVVSQLYGRYPFPKLMLTDPQDDWPAALTRICAAVRP
Ga0247691_10430053	3300024222	Soil	AWEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRAAVRP
Ga0207656_103045773	3300025321	Corn Rhizosphere	WEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRAAVRP
Ga0207671_108873581	3300025914	Corn Rhizosphere	RGLRGRDAVVGLYRAWEPVAAELFDRYPFGKLMVPDPHYDWPSALRAIRAAVRP
Ga0207663_102192451	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	YQAWEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRAAVRP
Ga0207663_109050772	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	RLYQAWDPVVSELFDRYPFPKLMVPDPHHDWPASLRAICAAVRP
Ga0207659_104585163	3300025926	Miscanthus Rhizosphere	AVVGLYQAWEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRTAVRP
Ga0207687_104725351	3300025927	Miscanthus Rhizosphere	RGRDAVVGLYQAWEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRTAVRP
Ga0207687_117024793	3300025927	Miscanthus Rhizosphere	AFVQDSPWARRRDLRGRAAVVGLYQAWEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRAAVRP
Ga0207700_101073033	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	AVVRLYQAWYPVASELFDRYPFGKLMVPDPHHDWPASLRAICAAVRP
Ga0207664_102200101	3300025929	Agricultural Soil	GLRGRDAVVGLYQAWEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRAAVRP
Ga0207677_105810304	3300026023	Miscanthus Rhizosphere	RRGLRGRDAVVGLYQAWEPVAVELFDRYPFGKLMLPDPQHDWPSALRAIRAAVRP
Ga0207641_109428411	3300026088	Switchgrass Rhizosphere	LRGRDAVVGLYRAWEPVAAELFDRYPFGKLMVPDPHYDWPSALRAIRAAVRP
Ga0207675_1011452274	3300026118	Switchgrass Rhizosphere	DSPWARRRGLRGRDAVVGLYQAWEPVAVELFDRYPFGKLMLPDPQHDWPSALRAIRAAVR
Ga0207683_109788561	3300026121	Miscanthus Rhizosphere	RDAVVGLYRAWEPVAAELFDRYPFGKLMVPDPHYDWPSALRAIRAAVRP
Ga0207683_112727283	3300026121	Miscanthus Rhizosphere	RDAVVGLYRAWEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRAAVRP
Ga0209155_12099252	3300026316	Soil	LRGRDAVVRLYQAWDPVASELFDRYPFGKLMVPDPHHDWLASLRAICTAVRP
Ga0208890_10041302	3300027523	Soil	LYQAWEPVAARLFDQYPFGKLMVPDPQRDWPAALRAIRAAVRP
Ga0209073_100645491	3300027765	Agricultural Soil	LAFVQDSPWARRHGLRGRDAVVGLYQAWEPVAARLFDQYPFGKLMLPDPQHDWPAALQAIRTAIRP
Ga0307284_101493301	3300028799	Soil	VQDSPWARRRDLRGRDAVVGLYQAWEPVAVELFDRYPFGKLMVPDPQHDWPAALRAIRAAVRP
Ga0222749_106653431	3300029636	Soil	RNLRRRDAVIRLYQAWEPVATQLYDRYPFPKLMVPDPQHDWPAALPCPSAARRTIRSPVR
Ga0318516_108132571	3300031543	Soil	DAVVGLYQAWEPVAARLYDRYPFGKLMVPDPQQDWPAAVRRICAAVRP
Ga0318515_106007571	3300031572	Soil	PVAARLYDRYPFGKLMVPDPQQDWPAAVRRICAAVRP
Ga0318496_105752692	3300031713	Soil	AWEPVVSQLYLRYPFGKLMVPDPQLDWPAALQRICAAVRP
Ga0318501_103031192	3300031736	Soil	PWARHRNLRGRDAVVGLYQAWEPVAARLYDRYPFGKLMVPDPQQDWPAAVRRICAAVRP
Ga0318501_105556551	3300031736	Soil	RHRNLRGLDAVVQLYQAWEPVVSQLYDGYPFPKLTVPDPHHDWPATVRVICAAVRP
Ga0306918_102714321	3300031744	Soil	YQAWEPVAARLYDRYPFGKLMVPDPQQDWPAAVRRICAAVRP
Ga0318543_104146033	3300031777	Soil	VVQLYQAWEPVVSQLYDGYPFPKLTVPDPHHDWPATVRVICAAVRP
Ga0318566_102127422	3300031779	Soil	WARRRNLHGRTAVVRLYQAWEPVVSQLYLRYPFGKLMVPDPQLDWPAALQRICAAVRP
Ga0318548_105579873	3300031793	Soil	LYQAWEPVVSQLYDGYPFPKLTVPDPHHDWPATVRVICAAVRP
Ga0318512_106260961	3300031846	Soil	AWEPVAARLYDRYPFGKLMVPDPQQDWPAAVRRICAAVRP
Ga0318512_107023761	3300031846	Soil	YQAWEPVVSQLYDGYPFPKLTVPDPHHDWPATVRVICAAVRP
Ga0318551_107590011	3300031896	Soil	VGLYRQWEAVVSQLYGRYPFSKLMLTDPQDDWPAALTRICAAVRP
Ga0306921_110258893	3300031912	Soil	PWARHRNLRGLDAVVQLYQAWEPVVSQLYDGYPFPKLTVPDPHHDWPATVRVICAAVRP
Ga0308175_1004116911	3300031938	Soil	EPVAAGLFDRYPFGKVMVPDPQHDWPAALRVIRAAVRP
Ga0310910_108530191	3300031946	Soil	AWEPVAARLYDRYRFGKLMVPDPQHDWPAALRRICATVRP
Ga0318559_103599493	3300032039	Soil	SPRNLAFVEDSPWARHRNLRGLDAVVQLYQAWEPVVSQLYDGYPFPKLTVPDPHHDWPATVRVICAAVRP
Ga0318558_105005743	3300032044	Soil	RTLRGLDAVVQLYQAWEPVVSQLYDGYPFPKLTVPDPHHDWPATVRVICAAVRP
Ga0318524_104947461	3300032067	Soil	SPWARHRNLRGLDAVVQLYQAWEPVVSQLYDGYPFPKLTVPDPHHDWPATVRVICAAVRP
Ga0318518_103782532	3300032090	Soil	QAWEPVVSQLYLRYPFGKLMVPDPQLDWPAALQRICAAVRP
Ga0307470_110143371	3300032174	Hardwood Forest Soil	DSPWARRRGLRGRDAVVGLYRAWEPVAAELFDRYPFGKLMVPDPQHDWPSALRAIRAAVR
Ga0306920_1031102832	3300032261	Soil	WARHRNLRGRDAVVGLYQAWEPVAARLYDRYPFGKLMVPDPQQDWPAAVRRICAAVRP
Ga0335085_1001972312	3300032770	Soil	RDAVIRLYQAWEPVVSQLYDRYPFGKLIVPDPQRDWPAALQTIYAAVRP
Ga0335078_120960652	3300032805	Soil	QLYQAWEPVAVRLYRQYPFPKLMVPDPQRDWPTALRNICAAVRP
Ga0335070_120541102	3300032829	Soil	LRGRDAVVRLYQAWEPVVSQLYRRYPFGKLMVPDPQRDWPSALRTICAAVRP
Ga0335084_109162762	3300033004	Soil	RGRDAVIRLYQAWEPVVSQLYDRYPFGKLIVPDPQRDWPAALQTIYAAVRP
Ga0335073_115439742	3300033134	Soil	DSPWARRHGLRGRDAVVGLYQAWEPVAAGLFDRYPFGKLMVPDPQHDWPSALRAVRAAVR
Ga0318519_107022072	3300033290	Soil	GRDAVVGLYQAWEPVAARLYDRYPFGKLMVPDPQQDWPAAVRRICAAVRP
Ga0318519_107147572	3300033290	Soil	AVVRLYQAWEPVVSQLYERYPFGKLMVPDPRHDWPAALQTIYAAVRP
Ga0318519_109121061	3300033290	Soil	RNLRGREAVVRLYQAWEPVAGELYDRYLFPKLMVPDPQLDWPSALQAICAAVRP
Ga0314862_0138584_19_210	3300033803	Peatland	VENSPWARRRNLRGREAVIRLYQAWEPVASELYDRYPFAKLMVPDPRHDWPAALRAICAAVRP