Metagenome / Metatranscriptome Family F097741

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097741
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	55 residues
Representative Sequence	MKSGVWNLGFGLVAVAAGASGQFTLPGTTSPTPLIVLGAAVAALGVFQLWKNRGR
Number of Associated Samples	77
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	48.08 %
% of genes near scaffold ends (potentially truncated)	22.12 %
% of genes from short scaffolds (< 2000 bps)	67.31 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.538 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (19.231 % of family members)
Environment Ontology (ENVO)	Unclassified (32.692 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.654 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 45.78% β-sheet: 0.00% Coil/Unstructured: 54.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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SCOP family	SCOP domain	Representative PDB	TM-score
f.55.1.1: Photosystem II antenna protein-like	d5b5ec_	5b5e	0.77418
a.24.9.1: alpha-catenin/vinculin	d3rf3a1	3rf3	0.75863
f.59.1.1: Cation efflux protein transmembrane domain-like	d3h90a1	3h90	0.74468
f.63.1.1: Claudin	d3jbre_	3jbr	0.71473
f.38.1.3: Proton-dependent oligopeptide transporter (POT or PTR2) / nitrate transporter NRT1 family	d4oh3a_	4oh3	0.713

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00571	CBS	10.58
PF13801	Metal_resist	10.58
PF01475	FUR	6.73
PF00923	TAL_FSA	4.81
PF01007	IRK	2.88
PF00069	Pkinase	2.88
PF07813	LTXXQ	2.88
PF01812	5-FTHF_cyc-lig	1.92
PF01272	GreA_GreB	0.96
PF01170	UPF0020	0.96
PF13486	Dehalogenase	0.96
PF13546	DDE_5	0.96
PF02915	Rubrerythrin	0.96
PF14238	DUF4340	0.96
PF09363	XFP_C	0.96
PF02518	HATPase_c	0.96
PF00441	Acyl-CoA_dh_1	0.96
PF13540	RCC1_2	0.96
PF00248	Aldo_ket_red	0.96
PF05940	NnrS	0.96
PF04069	OpuAC	0.96
PF00700	Flagellin_C	0.96
PF00365	PFK	0.96
PF12802	MarR_2	0.96
PF00364	Biotin_lipoyl	0.96
PF01804	Penicil_amidase	0.96
PF16697	Yop-YscD_cpl	0.96
PF12729	4HB_MCP_1	0.96
PF00072	Response_reg	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	11.54
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	11.54
COG0735	Fe2+ or Zn2+ uptake regulation protein Fur/Zur	Inorganic ion transport and metabolism [P]	6.73
COG0176	Transaldolase/fructose-6-phosphate aldolase	Carbohydrate transport and metabolism [G]	4.81
COG0212	5-formyltetrahydrofolate cyclo-ligase	Coenzyme transport and metabolism [H]	1.92
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	0.96
COG0116	23S rRNA G2445 N2-methylase RlmL	Translation, ribosomal structure and biogenesis [J]	0.96
COG3213	Nitric oxide response protein NnrS	Signal transduction mechanisms [T]	0.96
COG2890	Methylase of polypeptide chain release factors	Translation, ribosomal structure and biogenesis [J]	0.96
COG2813	16S rRNA G1207 or 23S rRNA G1835 methylase RsmC/RlmG	Translation, ribosomal structure and biogenesis [J]	0.96
COG2366	Acyl-homoserine lactone (AHL) acylase PvdQ	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.96
COG2265	tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family	Translation, ribosomal structure and biogenesis [J]	0.96
COG2264	Ribosomal protein L11 methylase PrmA	Translation, ribosomal structure and biogenesis [J]	0.96
COG2263	Predicted RNA methylase	General function prediction only [R]	0.96
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.96
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.96
COG1344	Flagellin and related hook-associated protein FlgL	Cell motility [N]	0.96
COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	Translation, ribosomal structure and biogenesis [J]	0.96
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.96
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.96
COG0286	Type I restriction-modification system, DNA methylase subunit	Defense mechanisms [V]	0.96
COG0205	6-phosphofructokinase	Carbohydrate transport and metabolism [G]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.54 %
Unclassified	root	N/A	37.50 %
Polyangium	genus	Polyangium	0.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.54 %
Unclassified	root	N/A	37.50 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.54 %
Unclassified	root	N/A	37.50 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.96 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	45.19 %
Unclassified	root	N/A	37.50 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.96 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	37.50 %
Unclassified	root	N/A	37.50 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.96 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	37.50 %
Unclassified	root	N/A	37.50 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	30.77 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	3.85 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	6.73 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.85 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	1.92 %
unclassified Myxococcales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales	0.96 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.85 %
Sandaracinaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae	2.88 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	2.88 %
Labilitrichaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Labilitrichaceae	0.96 %
Myxococcales bacterium 68-20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium 68-20	0.96 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.96 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.85 %
Sandaracinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → Sandaracinus	2.88 %
Sorangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium	1.92 %
Labilithrix	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Labilitrichaceae → Labilithrix	0.96 %
Myxococcales bacterium 68-20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium 68-20	0.96 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.96 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.85 %
Sandaracinus amylolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → Sandaracinus → Sandaracinus amylolyticus	1.92 %
Sorangium cellulosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	1.92 %
Labilithrix luteola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Labilitrichaceae → Labilithrix → Labilithrix luteola	0.96 %
unclassified Sandaracinus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → Sandaracinus → unclassified Sandaracinus	0.96 %
Myxococcales bacterium 68-20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium 68-20	0.96 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.96 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.50 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.85 %
Sandaracinus amylolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → Sandaracinus → Sandaracinus amylolyticus	1.92 %
Sorangium cellulosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	1.92 %
Sandaracinus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → Sandaracinus → unclassified Sandaracinus → Sandaracinus sp.	0.96 %
Labilithrix luteola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Labilitrichaceae → Labilithrix → Labilithrix luteola	0.96 %
Myxococcales bacterium 68-20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium 68-20	0.96 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.96 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004092\|Ga0062389_100009698	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	6181	Open in IMG/M
3300004092\|Ga0062389_100034853	All Organisms → cellular organisms → Bacteria	3809	Open in IMG/M
3300004092\|Ga0062389_100496468	Not Available	1366	Open in IMG/M
3300004092\|Ga0062389_102884481	Not Available	642	Open in IMG/M
3300004092\|Ga0062389_103751406	Not Available	570	Open in IMG/M
3300004152\|Ga0062386_100246304	All Organisms → cellular organisms → Bacteria → Proteobacteria	1415	Open in IMG/M
3300004152\|Ga0062386_100939809	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300004152\|Ga0062386_100944429	Not Available	713	Open in IMG/M
3300004635\|Ga0062388_100445812	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300005537\|Ga0070730_10054134	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	2884	Open in IMG/M
3300005541\|Ga0070733_10607289	Not Available	733	Open in IMG/M
3300005591\|Ga0070761_10011922	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	4889	Open in IMG/M
3300005591\|Ga0070761_10628085	Not Available	669	Open in IMG/M
3300005610\|Ga0070763_10958644	Not Available	511	Open in IMG/M
3300005712\|Ga0070764_10163175	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1231	Open in IMG/M
3300005861\|Ga0080006_1165252	All Organisms → cellular organisms → Bacteria → Proteobacteria	25524	Open in IMG/M
3300005921\|Ga0070766_10766409	Not Available	656	Open in IMG/M
3300005993\|Ga0080027_10004200	All Organisms → cellular organisms → Bacteria	5412	Open in IMG/M
3300006162\|Ga0075030_100214211	All Organisms → cellular organisms → Bacteria → Proteobacteria	1549	Open in IMG/M
3300006176\|Ga0070765_100113776	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2362	Open in IMG/M
3300006176\|Ga0070765_100897432	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300006176\|Ga0070765_101576389	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300007982\|Ga0102924_1002473	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	20126	Open in IMG/M
3300009500\|Ga0116229_10449867	Not Available	1070	Open in IMG/M
3300009510\|Ga0116230_10242237	Not Available	1449	Open in IMG/M
3300010376\|Ga0126381_102715656	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	708	Open in IMG/M
3300010376\|Ga0126381_103820662	Not Available	588	Open in IMG/M
3300010379\|Ga0136449_100108652	All Organisms → cellular organisms → Bacteria	5647	Open in IMG/M
3300010379\|Ga0136449_101796535	Not Available	918	Open in IMG/M
3300010396\|Ga0134126_12711860	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	538	Open in IMG/M
3300010869\|Ga0126359_1651311	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	594	Open in IMG/M
3300010877\|Ga0126356_10158980	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1016	Open in IMG/M
3300010877\|Ga0126356_10512540	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300010880\|Ga0126350_10970488	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2109	Open in IMG/M
3300012944\|Ga0137410_11777474	Not Available	544	Open in IMG/M
3300014165\|Ga0181523_10445274	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	719	Open in IMG/M
3300014165\|Ga0181523_10705047	Not Available	551	Open in IMG/M
3300014168\|Ga0181534_10005507	All Organisms → cellular organisms → Bacteria	7163	Open in IMG/M
3300014169\|Ga0181531_10538969	Not Available	722	Open in IMG/M
3300014200\|Ga0181526_10526544	Not Available	748	Open in IMG/M
3300014489\|Ga0182018_10000190	All Organisms → cellular organisms → Bacteria → Proteobacteria	81373	Open in IMG/M
3300014489\|Ga0182018_10165664	All Organisms → cellular organisms → Bacteria	1255	Open in IMG/M
3300014657\|Ga0181522_10213360	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	1137	Open in IMG/M
3300014658\|Ga0181519_10038203	All Organisms → cellular organisms → Bacteria → Proteobacteria	3260	Open in IMG/M
3300016404\|Ga0182037_11421735	Not Available	614	Open in IMG/M
3300017924\|Ga0187820_1044926	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1183	Open in IMG/M
3300021168\|Ga0210406_10196002	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Labilitrichaceae → Labilithrix → Labilithrix luteola	1677	Open in IMG/M
3300021181\|Ga0210388_10133347	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2148	Open in IMG/M
3300021181\|Ga0210388_11552797	Not Available	551	Open in IMG/M
3300021405\|Ga0210387_11674962	Not Available	539	Open in IMG/M
3300021433\|Ga0210391_10004858	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	11110	Open in IMG/M
3300021433\|Ga0210391_10489721	Polyangium → Polyangium fumosum	965	Open in IMG/M
3300021475\|Ga0210392_10551991	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	852	Open in IMG/M
3300021478\|Ga0210402_11491870	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → Sandaracinus → unclassified Sandaracinus → Sandaracinus sp.	603	Open in IMG/M
3300021559\|Ga0210409_10003135	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	18912	Open in IMG/M
3300021559\|Ga0210409_10115779	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2466	Open in IMG/M
3300021559\|Ga0210409_10119102	Not Available	2428	Open in IMG/M
3300022557\|Ga0212123_10029496	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	5704	Open in IMG/M
3300025503\|Ga0209012_1001379	All Organisms → cellular organisms → Bacteria	25409	Open in IMG/M
3300025664\|Ga0208849_1023063	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2054	Open in IMG/M
3300026281\|Ga0209863_10235444	Not Available	526	Open in IMG/M
3300027745\|Ga0209908_10220430	Not Available	526	Open in IMG/M
3300027853\|Ga0209274_10021707	All Organisms → cellular organisms → Bacteria	2933	Open in IMG/M
3300027860\|Ga0209611_10454152	Not Available	726	Open in IMG/M
3300027879\|Ga0209169_10143284	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300027889\|Ga0209380_10636984	Not Available	615	Open in IMG/M
3300027905\|Ga0209415_10008627	All Organisms → cellular organisms → Bacteria	17655	Open in IMG/M
3300027905\|Ga0209415_10031919	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	7534	Open in IMG/M
3300027905\|Ga0209415_10050669	All Organisms → cellular organisms → Bacteria	5350	Open in IMG/M
3300027905\|Ga0209415_10060038	All Organisms → cellular organisms → Bacteria → Proteobacteria	4696	Open in IMG/M
3300027905\|Ga0209415_10133474	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → Sandaracinus → Sandaracinus amylolyticus	2566	Open in IMG/M
3300027905\|Ga0209415_10531358	Not Available	895	Open in IMG/M
3300027908\|Ga0209006_10427472	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300028563\|Ga0265319_1000491	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	27469	Open in IMG/M
3300028906\|Ga0308309_10086515	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium 68-20	2386	Open in IMG/M
3300028906\|Ga0308309_11156276	Not Available	668	Open in IMG/M
3300029636\|Ga0222749_10272344	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300029951\|Ga0311371_10161523	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3409	Open in IMG/M
3300029999\|Ga0311339_10000180	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	125722	Open in IMG/M
3300030520\|Ga0311372_12778815	Not Available	539	Open in IMG/M
3300030740\|Ga0265460_11342053	Not Available	699	Open in IMG/M
3300030743\|Ga0265461_12031008	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	657	Open in IMG/M
3300030743\|Ga0265461_13112664	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	558	Open in IMG/M
3300030998\|Ga0073996_12151487	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	743	Open in IMG/M
3300031022\|Ga0138301_1888904	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1214	Open in IMG/M
3300031047\|Ga0073995_12237686	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1575	Open in IMG/M
3300031057\|Ga0170834_112224282	Not Available	544	Open in IMG/M
3300031231\|Ga0170824_104594507	Not Available	553	Open in IMG/M
3300031234\|Ga0302325_10031157	All Organisms → cellular organisms → Bacteria → Proteobacteria	10977	Open in IMG/M
3300031239\|Ga0265328_10148136	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	882	Open in IMG/M
3300031525\|Ga0302326_13595602	Not Available	513	Open in IMG/M
3300031544\|Ga0318534_10486767	Not Available	705	Open in IMG/M
3300031712\|Ga0265342_10300691	Not Available	845	Open in IMG/M
3300031718\|Ga0307474_10445496	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1012	Open in IMG/M
3300031754\|Ga0307475_10027492	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	4082	Open in IMG/M
3300031799\|Ga0318565_10636332	Not Available	512	Open in IMG/M
3300031962\|Ga0307479_11266506	Not Available	699	Open in IMG/M
3300032160\|Ga0311301_11474884	Not Available	841	Open in IMG/M
3300032261\|Ga0306920_100523834	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1758	Open in IMG/M
3300032893\|Ga0335069_10006477	All Organisms → cellular organisms → Bacteria → Proteobacteria	17005	Open in IMG/M
3300032893\|Ga0335069_10367632	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → Sandaracinus → Sandaracinus amylolyticus	1695	Open in IMG/M
3300032893\|Ga0335069_12254829	Not Available	569	Open in IMG/M
3300033158\|Ga0335077_11063011	Not Available	802	Open in IMG/M
3300033405\|Ga0326727_10485077	Not Available	1084	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.23%
Host-Associated	Host-Associated	5.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.08%
Aquatic	Environmental → Aquatic	21.15%
Plants	Host-Associated → Plants	5.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.31%
Freshwater	Environmental → Aquatic → Freshwater	16.35%
Peat	Environmental → Terrestrial → Peat	5.77%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.88%
Peat Moss	Host-Associated → Plants → Peat Moss	2.88%
Sediment	Environmental → Aquatic → Sediment	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.19%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	16.35%
Loam	Environmental → Terrestrial → Soil → Loam	13.46%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.77%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.88%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.27%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	15.38%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.46%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.77%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.81%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	2.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.23%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	12.50%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	8.65%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	8.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	6.73%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.85%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	3.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.88%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	2.88%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.92%
Hypersaline Mat	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.92%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.92%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.96%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.96%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005861	Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPADES assembly)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009510	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010869	Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025503	Ferric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B (SPAdes)	Environmental	Open in IMG/M
3300025664	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027860	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)	Host-Associated	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028563	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300030998	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031047	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031239	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG	Host-Associated	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062389_1000096983	3300004092	Bog Forest Soil	MIGGMKSGVWNLGFGLIAVAAGAGGQYTLPGTSSPTPLIVAGALVAALGVYQLWRNRGQ*
Ga0062389_1000348534	3300004092	Bog Forest Soil	MKSGIWNLGFGLLAVLAGSTGGYSLPGTSGPTPLIVVGAALAAFGLFQLARSTRRG*
Ga0062389_1004964682	3300004092	Bog Forest Soil	MKAGVWNLGFGLIAIAAGLSGQYALPGTSNPIYLVAAGGAIAALGVFQLWKNRGK*
Ga0062389_1028844812	3300004092	Bog Forest Soil	MKSGIWNLGFGIVAVLAGLTGGYALPGTNSPTPLIVIGAALAAFGLFQLARSARQRP*
Ga0062389_1037514062	3300004092	Bog Forest Soil	MKSGIWNLGFGLIAVAAGASGQYSLPGTTGPVPLLVVGGLLAGFGCFQIWRGRGK*
Ga0062386_1002463042	3300004152	Bog Forest Soil	MKSGIWNIGFGVVAVLAGASGRFALPFTNSPTPLMVVGAALAAYGLFQIARSRGR*
Ga0062386_1009398092	3300004152	Bog Forest Soil	MRSGVWNIGFGLVAVAAGASGRFTLLGTGSSTALMVVGGLLAAFGLTQLVRSRGK*
Ga0062386_1009444292	3300004152	Bog Forest Soil	MKAGVWNLGFGLIAIVAGLSGQFGGPVFVIPGTSNPMYLVGAGGLLAAFGVYQLWKNKGR
Ga0062388_1004458123	3300004635	Bog Forest Soil	MKSGIWNLGFGLLAVLAGSTGGYSLPGTSGPTPLIVVGAALAAFGLFQLAVNPARVTPSP
Ga0070730_100541345	3300005537	Surface Soil	MKTGIWNLGFGLVALAAGASGQFTFFGTQSSTLLMIGGGLIAALGVFQLWQLRGR*
Ga0070733_106072891	3300005541	Surface Soil	MGAMKSGVWNLGFGLVAVGAGASGEFALPGTHSPTPLIVVGALLALFGVYQLWKSKGT*
Ga0070761_100119224	3300005591	Soil	MKSGIWNLGFGLIAVLAGATGGYALPGTSSPTPLIVVGAAVAAFGLFQLARSTRSG*
Ga0070761_106280852	3300005591	Soil	MKSGIWNLGFGLVAVLAGASGRFSLPGTSSPVPLMVVGAVLAAFGLFQLATSRGR*
Ga0070763_109586442	3300005610	Soil	MKAGVWNLGFGIIAIAAGLSGQFVIPGTSNPMYLVGAGGLLAAFGVFQLWRSRGR*
Ga0070764_101631751	3300005712	Soil	QARLRAAPDAVCSGAMKSGVWNLGFGLVAVAAGATGQFKLLGTDSSTLLIVAGALVATLGVFQLWKNRGK*
Ga0080006_116525214	3300005861	Hypersaline Mat	MKAGVWNLGFGLVAIAAGASGKFALPFTNGTTPLVIAGAAIAALGVFQLWRSRGR*
Ga0070766_107664092	3300005921	Soil	MKSGVWNLGFGLVAVAAAASGQFVLPGTKSPAPLMVVGALLAAFGVYQLWKTKGA*
Ga0080027_100042001	3300005993	Prmafrost Soil	AEMKSGVWNLGFGLVAVAAGASGQFTLLGTSSSTLLIVAGSLVTALGVFQLWKNRGR*
Ga0075030_1002142112	3300006162	Watersheds	MKAGVWNLGFGILAIVAGLSGQFRLPFLDNPMYLVAAGAVIAALGVFQLWKNKGR*
Ga0070765_1001137763	3300006176	Soil	MKSGVWNLGFGLVAVAAAASGQFVLPGTKSPTPLMVVGALLAAFGVYQLWKTKGA*
Ga0070765_1008974322	3300006176	Soil	MLRAMKSGVWNLGFGLVAVAAGASGQFTLLGTSSSTLLIVAGAVVATLGVFQLWKNRGK*
Ga0070765_1015763892	3300006176	Soil	MRSGVWNLGFGLVAIAAGASGQFTLLGTSSSTLLIVAGAVCAALGVFQLWKNRGA*
Ga0102924_100247315	3300007982	Iron-Sulfur Acid Spring	VKTGLWNLGFGLVAIVAGASGRFALLGTSSSTLLMVAGGAVAALGVYQLWRLRGR*
Ga0116229_104498671	3300009500	Host-Associated	MKAGVWNLGFGLIAIVAGASGKYALPGTSNPMYLVAAGVVVAGLGVFQLWRNRGR*
Ga0116230_102422372	3300009510	Host-Associated	MKAGVWNLGFGLIAIVAGASGKYAFPGTSNPMYLVAAGVVVAGLGVFQLWRNRGR*
Ga0126381_1027156562	3300010376	Tropical Forest Soil	NLGFGLVAVAAGASGQFTLLGTSSSTLLMVAGAAVAALGVFQLWKNRGK*
Ga0126381_1038206622	3300010376	Tropical Forest Soil	SPMKVGMWNLGLGLVAVAMGATGKYALFGIGSPKLLMAVGGLLAAFGLFQLVRSRGQ*
Ga0136449_1001086526	3300010379	Peatlands Soil	MKSGVWNLGFGLVAVAAGASGQFRLPGTTGPTPLIVVGALLALFGVYQLWKAKGA*
Ga0136449_1017965352	3300010379	Peatlands Soil	MKSGVWNLGFGLVAVAAGASGQFSLPGTTSPTPLIVVGALLAVFGVYQLWKSKGT*
Ga0134126_127118601	3300010396	Terrestrial Soil	VKSGFWNLGFGLVAIAAGATGQFKLIFTESSTALIAAGAAVAALGVFQLWKNRGQ*
Ga0126359_16513112	3300010869	Boreal Forest Soil	MKSGVWNLGFGLVAVAAGASGQFTLLGTSSGTLLIVAGAVVAALGVFQLWKNRGA*
Ga0126356_101589801	3300010877	Boreal Forest Soil	LEYAAGMKSGVWNLGFGLVAVAAGASGQFTLLGTSSSTLLIVAGSLVAALGVFQLWKNRGN*
Ga0126356_105125402	3300010877	Boreal Forest Soil	MRSGVWNLGFGLVAVAAGASGQFTLLGTSSSTLLIVAGAVVAALGVFQLWKNRGA*
Ga0126350_109704882	3300010880	Boreal Forest Soil	MKSGVWNLGFGLVAVAAGASGQFTLLGTSSSTLLIVAGAVVAALGVFQLWKNRGA*
Ga0137410_117774742	3300012944	Vadose Zone Soil	WNLGIGLVGIAAGASGQFTLPGTTSPTPLIVVGAAIATLGVYQLWRSRGK*
Ga0181523_104452742	3300014165	Bog	MRPGVWNLGFGLVAVAAGVSGKFTLLGTGSPTALIVVGGLLAAFGLIQLVRSRGK*
Ga0181523_107050471	3300014165	Bog	GVVAVLAGASGRFALPFTSSPTPLMVVGAALAAFGLFQIATSRGR*
Ga0181534_100055074	3300014168	Bog	MRRGTWNLVFGLAAIAAGASGKFVLLGTRSPLLLMVAGGVMAALGVYQLVRGPRA*
Ga0181531_105389693	3300014169	Bog	MKAGVWNLGFGLVAIAAGASGKFALIGTSSSSLLVVAGVAMAGFGVFQLWRNKGR*
Ga0181526_105265443	3300014200	Bog	MKAGVWNLGFGLIAIAAGASGQYALPGTSNPMYLVIAGVVVAGLGVFQLW
Ga0182018_1000019034	3300014489	Palsa	MKSGVWNLGFGLVAIGAGASGQFRLPLTSSPTPLIVVGAALAAFGVYQLWKSKGA*
Ga0182018_101656643	3300014489	Palsa	MKSGVWNLGFGLVAVAAAASGHFVLPGTKSPTPLIVVGALLAAFGVYQLWKTKGA*
Ga0181522_102133602	3300014657	Bog	MWNLGFGVVAVLAGASGRFALPFTSSPTPLIVVGAALAAFGLFQIATSRGR*
Ga0181519_100382033	3300014658	Bog	MKAGVWNLGFGLIAIAAGASGQYALPGTTNPMYLVGAGIVVAGLGVFQLWRNRGR*
Ga0182037_114217351	3300016404	Soil	MKAGIWNLGFGLLAVLAGASGQFVLPFTSSPTPLIVAGALLSAFGLVQLVRARSM
Ga0187820_10449262	3300017924	Freshwater Sediment	MKAGMWNLGFGVLAVLAGASGNFVLPFTTTPTPLIIAGALLAVLGLVQLVRARGT
Ga0210406_101960023	3300021168	Soil	MKSGVWNLGFGLVAVAAGASGQFTLLGTSSSTLLIVAGAVVAALGVFQLWKNRGA
Ga0210388_101333472	3300021181	Soil	MKSGVWNLGFGLVAVAAGASGQFTLPGTTSPTPLIVLGAAVAALGVFQLWKNRGR
Ga0210388_115527971	3300021181	Soil	QARQRRGARAPDAVCSGAMKSGVWNLGFGLVAVAAGASGQFTLPGTTSAIPLIVAGAAVAALGVFQLWKNRGR
Ga0210387_116749622	3300021405	Soil	VCSGAMKSGVWNLGFGLVAVAAGASGQFTLPGTTSPTPLIVLGAAVAALGVFQLWKNRGR
Ga0210391_1000485811	3300021433	Soil	VKSGIWNLGFGLVAALAGASGQFVLPGTTTSVPLIVLGALLATFGAYQLWRASRGR
Ga0210391_104897212	3300021433	Soil	GVWNLGFGLLAVGAGASGEFALPLTHSPTPLIVVGALLAAFGVYQLWKSKGT
Ga0210392_105519911	3300021475	Soil	MKSGVWNLGFGLVAVAAGASGQFTLLGTSSGTLLIVAGAVVAALGVFQLWKNRGA
Ga0210402_114918701	3300021478	Soil	MLGPMKSGVWNLGFGLVAVAAGASGQFTLLGTSSSTLLIVAGAAVAALGVFQLWKNRGR
Ga0210409_100031355	3300021559	Soil	MKAGIWNLGFGVLAVLAGASGRFVLPFTSSPTPLIIVGAALAVLGLVQLVRSRGA
Ga0210409_101157793	3300021559	Soil	MWNLGFGIAAVLAGASGRFVLPFTSSPALLMVAGALLAVVGLVQLVRSRGT
Ga0210409_101191022	3300021559	Soil	MKSGVWNLGIGLVGVAAGLNGYALPLTNTGTPLVVVGALIATLGVYQLWSNRGR
Ga0212123_100294967	3300022557	Iron-Sulfur Acid Spring	VKTGLWNLGFGLVAIVAGASGRFALLGTSSSTLLMVAGGAVAALGVYQLWRLRGR
Ga0209012_100137914	3300025503	Hypersaline Mat	MKAGVWNLGFGLVAIAAGASGKFALPFTNGTTPLVIAGAAIAALGVFQLWRSRGR
Ga0208849_10230632	3300025664	Arctic Peat Soil	MKSGVWNLGFGLVAMAAGASGQFTLLGTSSGTLLIVAGAVVAALGVFQLWKNRGA
Ga0209863_102354442	3300026281	Prmafrost Soil	AEMKSGVWNLGFGLVAVAAGASGQFTLLGTSSSTLLIVAGSLVTALGVFQLWKNRGR
Ga0209908_102204302	3300027745	Thawing Permafrost	MKSGVWNLGFGLVAIGAGASGQFRLPLTSSPTPLIVVGAALAAFGVYQLWKSKGA
Ga0209274_100217073	3300027853	Soil	MKSGIWNLGFGLIAVLAGATGGYALPGTSSPTPLIVVGAAVAAFGLFQLARSTRSG
Ga0209611_104541521	3300027860	Host-Associated	LGFGLIAIVAGASGKYALPGTSNPMYLVAAGVVVAGLGVFQLWRNRGR
Ga0209169_101432841	3300027879	Soil	MKSGVWNLGFGLVAVAAGATGQFKLLGTDSSTLLIVAGALVATLGVFQLWKNRGK
Ga0209380_106369842	3300027889	Soil	MKSGVWNLGFGLVAVAAAASGQFVLPGTKSPAPLMVVGALLAAFGVYQLWKTKGA
Ga0209415_1000862710	3300027905	Peatlands Soil	MKSGVWNLGFGLVAVAAGASGQFRLPGTTGPTPLIVVGALLALFGVYQLWKAKGA
Ga0209415_100319193	3300027905	Peatlands Soil	MKSGVWNLGFGLIAVAAGASGQYRLPMTSSPTPLIVVGALLAAFGVYQLWKNKGA
Ga0209415_100506694	3300027905	Peatlands Soil	MKSGVWNLGFGLVAVAAGASGQFSLPGTTSPTPLIVVGALLAVFGVYQLWKSKGT
Ga0209415_100600384	3300027905	Peatlands Soil	MRAGIWNLLFGLVAVAAGASGKFVLPFTTSPLPLMVLGGAIASFGAYQLWRDRAKPT
Ga0209415_101334741	3300027905	Peatlands Soil	MKAGVWNLGFGLIAIAAGASGQYALPGTSNPMYLVIAGVVVAGIGVFQL
Ga0209415_105313582	3300027905	Peatlands Soil	MKAGVWNLGFGLVAVAAGLSGQFTLLGTSGSTGQTALIVVGGLLVTFGVFQLWRNKGQ
Ga0209006_104274723	3300027908	Forest Soil	MLGAMKSGVWNLGFGLVAVAAGASGQFTLLGTSSSTLLIVSGAVVAALGVFQLWKNRGK
Ga0265319_10004913	3300028563	Rhizosphere	MRPGVWNLGFGLVAVAAGASGQFTLLGTGSATALVVVGGLLAAFGLVQLVRSRGR
Ga0308309_100865153	3300028906	Soil	MKSGVWNLGFGLVAVAAAASGQFVLPGTKSPTPLMVVGALLAAFGVYQLWKTKGA
Ga0308309_111562762	3300028906	Soil	MLRAMKSGVWNLGFGLVAVAAGASGQFTLLGTSSSTLLIVAGAVVATLGVFQLWKNRGK
Ga0222749_102723441	3300029636	Soil	MKAGIWNLGFGVLAVLAGASGRFVLPFTSSPTPLIIVGAALAVLGLV
Ga0311371_101615234	3300029951	Palsa	MKAGVWNLGFGLIAIAAGASGQYALPGTSNPIYLVAAGVVVAGLGVFQLWRNRGR
Ga0311339_1000018016	3300029999	Palsa	MKSGIWNLGFGLVAVLAGASGRFSLPGTSTPTPLIVVGAVLAAFGLFQLATSRGR
Ga0311372_127788151	3300030520	Palsa	MKSGIWNLGFGIVAVLAGLTGGYALPGTNSPTPLIVIGAGLAAFGLFQLARSARQRP
Ga0265460_113420531	3300030740	Soil	LGFGLVAVAAGASGKFVLPGTSSPTPLIVVGALLALFGVYQLWKTKGA
Ga0265461_120310082	3300030743	Soil	SGIWNLGFGLVAVGAGASGQFMLPGTSTPTPLIVVGALLAAFGIFQLWRARGT
Ga0265461_131126642	3300030743	Soil	WRRLGTMKSGIWNLGFGLIAVLAGATGGYALPGTTSPTPLIVVGAAVAAFGLFQLARSTRTR
Ga0073996_121514871	3300030998	Soil	GMKSGVWNLGFGLVAVAAGASGQFTLLGTSSSTLLIVAGAVVAALGVFQLWRNKGK
Ga0138301_18889042	3300031022	Soil	MKSGVWNLGFGIVAMLAGATGEFTFFGTNSTALLVAAGGAVAALGVFQLWRSRGT
Ga0073995_122376862	3300031047	Soil	MLGAMRSGVWNLGFGLVAVAAGASGEFTLLGTSSSTLLIVAGALVAALGVFQLWRNKGK
Ga0170834_1122242822	3300031057	Forest Soil	MKSGVWNLGFGIVAMLAGATGEFTFFGTNSTALLVAAGGVVAALGVFQLWRARGT
Ga0170824_1045945072	3300031231	Forest Soil	MLGGMKSGVWNLGFGLVAVAAGASGQFTLLGTSSSTLLIVAGAAVAALGVFQLWKNRGR
Ga0302325_100311577	3300031234	Palsa	MKSGVWNLGFGLVAVAAAASGQFVLPGTKSPTPLIVVGALLAAFGVYQLWKSKGA
Ga0265328_101481362	3300031239	Rhizosphere	MRSGVWNIGFGLVAVAAGASGKFTLLGTGSSGALIVVGGLLAAFGLIQLVRSRGK
Ga0302326_135956021	3300031525	Palsa	FGIVAVLAGLTGGYALPGTNSPTPLIVIGAGLAAFGLFQLARSARQRP
Ga0318534_104867672	3300031544	Soil	MKSGVWNLGFGLVAVAAGASGQFTLLGTNSSTWLIVAGALVAALGVFQLWKNRGA
Ga0265342_103006912	3300031712	Rhizosphere	MWNLAFGLVAIVGGASGQLTLWGTGSGTWLMVAGGVLAAVGLVQLVRGRGR
Ga0307474_104454962	3300031718	Hardwood Forest Soil	KSGIWNLGFGIVAVLAAASGGYALPGTTSPVPLMVVGSLLAAFGLYQLATSRGR
Ga0307475_100274926	3300031754	Hardwood Forest Soil	MKAGIWNLGFGLVAVAAGASGQFVLPGTSSPTPLVVLGALLAAFGVFQLWQSRGR
Ga0318565_106363322	3300031799	Soil	MKSGVWNLGFGLVAVAAGASGQFTLLGTNSSTWLIVAGALVAALGVFQL
Ga0307479_112665062	3300031962	Hardwood Forest Soil	MKAGIWNLGFGLLAVAAGASGQFALPGTTSPTPLIVLGAVLAAFGVFQLWQSRGR
Ga0311301_114748842	3300032160	Peatlands Soil	TLGDAGGPTSATIDPMKSGVWNLGFGLVAVAAVASGQFRLPGTTGPTPLIVVGALLALFGVYQLWKAKGA
Ga0306920_1005238342	3300032261	Soil	MLDRMKSGVWNLGFGLVAVAAGASGQFTLLGTNSSTWLIVAGALVAALGVFQLWKNRGA
Ga0335069_1000647718	3300032893	Soil	MRAGVWNLGFGLVAIAAGASGKFALLGTSGPMGSTLLVVAGAGLAAFGVFQLWKNKGR
Ga0335069_103676323	3300032893	Soil	MKAGVWNLGFGLVAIAAGASGQFTLLGTNSAPLLMAAGGLVAALGVYQLWRQRGR
Ga0335069_122548292	3300032893	Soil	MRTGMWNLAFGLVAVAAGASGKLTLIGTSSPTPLIVAGGLLAAFGAFQLWRSRGT
Ga0335077_110630113	3300033158	Soil	MKAGVWNLGFGLIAIAAGASGQFVIPGTSNPMYLVIAGAALAAFGVFQLWKNRGR
Ga0326727_104850772	3300033405	Peat Soil	MRPGMWNIGFGLVAVAAGASGRFSLLGTGSPIALMVVGGLLAAFGLIQLVRSRGT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097741

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences