Metagenome / Metatranscriptome Family F097692

Basic Information
Family ID	F097692
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	41 residues
Representative Sequence	LAGDVMRESVGEHSMVATDLLRGLPEAFRRAQKAAQEKFVRWGG
Number of Associated Samples	99
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.92 %
% of genes near scaffold ends (potentially truncated)	98.08 %
% of genes from short scaffolds (< 2000 bps)	90.38 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Most Common Taxonomy
Group	Bacteria (60.577 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (12.500 % of family members)
Environment Ontology (ENVO)	Unclassified (20.192 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.846 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 37.50% β-sheet: 0.00% Coil/Unstructured: 62.50%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF02367	TsaE	13.46
PF01408	GFO_IDH_MocA	10.58
PF07238	PilZ	4.81
PF01541	GIY-YIG	0.96
PF05050	Methyltransf_21	0.96
PF13643	DUF4145	0.96
PF00326	Peptidase_S9	0.96
PF05977	MFS_3	0.96
PF07786	HGSNAT_cat	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0802	tRNA A37 threonylcarbamoyladenosine biosynthesis protein TsaE	Translation, ribosomal structure and biogenesis [J]	13.46
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.96
COG3503	Uncharacterized membrane protein, DUF1624 family	Function unknown [S]	0.96

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.58 %
Unclassified	root	N/A	39.42 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.58 %
Unclassified	root	N/A	39.42 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.58 %
Unclassified	root	N/A	39.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.42 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	25.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.42 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.50 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	10.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.42 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.54 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	5.77 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.81 %
Acidobacteria bacterium RBG_13_68_16	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_13_68_16	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.42 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.54 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	5.77 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.81 %
Acidobacteria bacterium RBG_13_68_16	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_13_68_16	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.42 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.54 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	5.77 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.96 %
Acidobacteria bacterium RBG_13_68_16	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_13_68_16	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.42 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.54 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	5.77 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.96 %
Acidobacteria bacterium RBG_13_68_16	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_13_68_16	0.96 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10049148	All Organisms → cellular organisms → Bacteria → Acidobacteria	2274	Open in IMG/M
3300004091\|Ga0062387_100293053	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300004152\|Ga0062386_101841316	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300005542\|Ga0070732_10473615	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300005552\|Ga0066701_10263029	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300005569\|Ga0066705_10498637	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	762	Open in IMG/M
3300005591\|Ga0070761_10689616	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300005764\|Ga0066903_106022122	Not Available	635	Open in IMG/M
3300005921\|Ga0070766_10374644	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300005993\|Ga0080027_10227264	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300006052\|Ga0075029_100869263	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300006086\|Ga0075019_10468960	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	777	Open in IMG/M
3300006162\|Ga0075030_100078665	All Organisms → cellular organisms → Bacteria	2708	Open in IMG/M
3300006176\|Ga0070765_101841172	Not Available	567	Open in IMG/M
3300006358\|Ga0068871_101995178	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300006893\|Ga0073928_10856949	All Organisms → cellular organisms → Bacteria → Acidobacteria	625	Open in IMG/M
3300006954\|Ga0079219_10475274	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300007258\|Ga0099793_10544066	Not Available	579	Open in IMG/M
3300009174\|Ga0105241_11611518	Not Available	628	Open in IMG/M
3300009552\|Ga0116138_1238200	Not Available	503	Open in IMG/M
3300009638\|Ga0116113_1023078	All Organisms → cellular organisms → Bacteria	1377	Open in IMG/M
3300009698\|Ga0116216_10312775	Not Available	957	Open in IMG/M
3300010339\|Ga0074046_10219092	Not Available	1191	Open in IMG/M
3300010343\|Ga0074044_11007363	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300010376\|Ga0126381_103935999	Not Available	579	Open in IMG/M
3300010379\|Ga0136449_101692499	Not Available	954	Open in IMG/M
3300010379\|Ga0136449_104687804	Not Available	500	Open in IMG/M
3300010398\|Ga0126383_10257327	All Organisms → cellular organisms → Bacteria	1717	Open in IMG/M
3300010400\|Ga0134122_10468545	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1131	Open in IMG/M
3300011120\|Ga0150983_14880359	Not Available	507	Open in IMG/M
3300012202\|Ga0137363_11600254	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300012203\|Ga0137399_10392377	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1157	Open in IMG/M
3300012206\|Ga0137380_10163948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2025	Open in IMG/M
3300012211\|Ga0137377_10038047	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4396	Open in IMG/M
3300012359\|Ga0137385_11157723	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	634	Open in IMG/M
3300012683\|Ga0137398_10022774	All Organisms → cellular organisms → Bacteria → Acidobacteria	3429	Open in IMG/M
3300012925\|Ga0137419_10982315	Not Available	699	Open in IMG/M
3300012960\|Ga0164301_10470983	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300013306\|Ga0163162_10562405	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1268	Open in IMG/M
3300014501\|Ga0182024_12753013	Not Available	525	Open in IMG/M
3300014969\|Ga0157376_10065634	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3066	Open in IMG/M
3300017822\|Ga0187802_10342907	Not Available	586	Open in IMG/M
3300017940\|Ga0187853_10380184	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	627	Open in IMG/M
3300017943\|Ga0187819_10386905	Not Available	805	Open in IMG/M
3300017959\|Ga0187779_10661242	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300017970\|Ga0187783_10716231	Not Available	722	Open in IMG/M
3300017973\|Ga0187780_10981522	Not Available	615	Open in IMG/M
3300018038\|Ga0187855_10286784	Not Available	964	Open in IMG/M
3300018043\|Ga0187887_10548379	Not Available	682	Open in IMG/M
3300018043\|Ga0187887_10683011	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300018044\|Ga0187890_10316023	Not Available	877	Open in IMG/M
3300018088\|Ga0187771_10678601	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RBG_13_68_16	874	Open in IMG/M
3300018090\|Ga0187770_10589151	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300018090\|Ga0187770_11624378	Not Available	527	Open in IMG/M
3300020579\|Ga0210407_10465137	Not Available	989	Open in IMG/M
3300021170\|Ga0210400_10225371	All Organisms → cellular organisms → Bacteria	1528	Open in IMG/M
3300021171\|Ga0210405_10610732	Not Available	849	Open in IMG/M
3300021405\|Ga0210387_10211655	All Organisms → cellular organisms → Bacteria	1685	Open in IMG/M
3300021433\|Ga0210391_11315053	Not Available	557	Open in IMG/M
3300021478\|Ga0210402_10281786	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1537	Open in IMG/M
3300021478\|Ga0210402_10770276	Not Available	887	Open in IMG/M
3300021479\|Ga0210410_10809666	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	822	Open in IMG/M
3300022557\|Ga0212123_10178976	All Organisms → cellular organisms → Bacteria	1598	Open in IMG/M
3300022726\|Ga0242654_10213113	Not Available	677	Open in IMG/M
3300024271\|Ga0224564_1075458	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	674	Open in IMG/M
3300025986\|Ga0207658_11504803	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300026281\|Ga0209863_10254420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300026551\|Ga0209648_10203681	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1508	Open in IMG/M
3300026557\|Ga0179587_10978799	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300026984\|Ga0208732_1028403	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300027587\|Ga0209220_1003713	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4109	Open in IMG/M
3300027609\|Ga0209221_1135609	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	618	Open in IMG/M
3300027652\|Ga0209007_1132162	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300027745\|Ga0209908_10122354	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	663	Open in IMG/M
3300027826\|Ga0209060_10130265	Not Available	1171	Open in IMG/M
3300027846\|Ga0209180_10624301	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300027889\|Ga0209380_10324171	Not Available	905	Open in IMG/M
3300027895\|Ga0209624_10830164	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300027898\|Ga0209067_10373817	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	794	Open in IMG/M
3300027911\|Ga0209698_10794731	Not Available	715	Open in IMG/M
3300028017\|Ga0265356_1034452	Not Available	553	Open in IMG/M
3300028748\|Ga0302156_10254488	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300028759\|Ga0302224_10067202	All Organisms → cellular organisms → Bacteria	1355	Open in IMG/M
3300029636\|Ga0222749_10764563	Not Available	529	Open in IMG/M
3300029907\|Ga0311329_10174232	All Organisms → cellular organisms → Bacteria	1676	Open in IMG/M
3300029910\|Ga0311369_10155172	All Organisms → cellular organisms → Bacteria	2198	Open in IMG/M
3300029943\|Ga0311340_10045145	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5273	Open in IMG/M
3300029943\|Ga0311340_11166063	Not Available	622	Open in IMG/M
3300030520\|Ga0311372_11994077	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300030740\|Ga0265460_10733557	Not Available	848	Open in IMG/M
3300030743\|Ga0265461_13609925	Not Available	525	Open in IMG/M
3300030763\|Ga0265763_1015413	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300031057\|Ga0170834_103474645	Not Available	757	Open in IMG/M
3300031090\|Ga0265760_10004586	All Organisms → cellular organisms → Bacteria	3960	Open in IMG/M
3300031231\|Ga0170824_111014700	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1269	Open in IMG/M
3300031708\|Ga0310686_106216256	All Organisms → cellular organisms → Bacteria	1965	Open in IMG/M
3300031753\|Ga0307477_10440596	Not Available	889	Open in IMG/M
3300031941\|Ga0310912_11012039	Not Available	637	Open in IMG/M
3300031996\|Ga0308176_11387809	Not Available	747	Open in IMG/M
3300032783\|Ga0335079_11340975	Not Available	713	Open in IMG/M
3300032828\|Ga0335080_12312731	Not Available	514	Open in IMG/M
3300032898\|Ga0335072_10525071	Not Available	1217	Open in IMG/M
3300033134\|Ga0335073_10312073	All Organisms → cellular organisms → Bacteria	1881	Open in IMG/M
3300033829\|Ga0334854_019810	All Organisms → cellular organisms → Bacteria	1627	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.23%
Host-Associated	Host-Associated	5.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.92%
Aquatic	Environmental → Aquatic	17.31%
Plants	Host-Associated → Plants	5.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.23%
Freshwater	Environmental → Aquatic → Freshwater	10.58%
Peat	Environmental → Terrestrial → Peat	7.69%
Sediment	Environmental → Aquatic → Sediment	4.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.85%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.96%
Roots	Host-Associated → Plants → Roots	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	15.38%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.58%
Loam	Environmental → Terrestrial → Soil → Loam	10.58%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.81%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.38%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.58%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.69%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.81%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.92%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.50%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.62%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.77%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.81%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.81%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.81%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.85%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.92%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.92%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.92%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.92%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026984	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028017	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4	Host-Associated	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300030763	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033829	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100491484	3300000567	Peatlands Soil	REILGEHSLVATDLLRGLPDAFESARQTVREKFVCWEG*
Ga0062387_1002930531	3300004091	Bog Forest Soil	DVMRESVGEHSMVATDLLRGLPEAFWRAQKTAQEKFVRWDG*
Ga0062386_1018413161	3300004152	Bog Forest Soil	HGRAGDEMREILGEHSLVATDLLRGLPDAFESARQTVREKFVCWEG*
Ga0070732_104736151	3300005542	Surface Soil	VMRESVGELSLVATDLLHGLPEAFRRTRATAKQKLVCWGG*
Ga0066701_102630291	3300005552	Soil	GLAGDIARETMGEQSLVATDLVRSLPQAFHRARRNAQEKLAKICG*
Ga0066705_104986373	3300005569	Soil	GEHSLLATDLLEGLPEAFRRTWQAAQEKFVRWGA*
Ga0070761_106896161	3300005591	Soil	HGLAGDVMRDKIGEHSLVATDLLLGLPEAFRRSQEAFGQKFVCWT*
Ga0066903_1060221222	3300005764	Tropical Forest Soil	IVGEHSLVATDLLQGLPDAFERARAAAENKFAGWDG*
Ga0070766_103746442	3300005921	Soil	LSGDVMRESVGEHSMVATDLLRGLPEAFHRSRQAAKETFVSWED*
Ga0080027_102272642	3300005993	Prmafrost Soil	SAGDVMRESVGELPLVATDLLQGLPEGLRRTRRDAEGKIVRWDG*
Ga0075029_1008692631	3300006052	Watersheds	GLAGDVMLDNVGEHSMVATDLLRGLPEAFWSAQRTAREKFVRWGG*
Ga0075019_104689602	3300006086	Watersheds	VGEHSLVATDLLRGLPDAFQHAQKAALEKFVRWNG*
Ga0075030_1000786652	3300006162	Watersheds	MLDNVGEHSMVATDLLRGLPEAFWSAQRTAREKFVRWGG*
Ga0070765_1018411721	3300006176	Soil	ENVGEHSLVATDLLQGLPEAFRRTQEAAREKMVRWGG*
Ga0068871_1019951781	3300006358	Miscanthus Rhizosphere	DIARESMGEHSLVATDLVKALPAAFRRTREAAAERFSYIQAQP*
Ga0073928_108569492	3300006893	Iron-Sulfur Acid Spring	GDVMRESVGEHSLVATDLLRGLPEAFRRTQNAINEKSVCWGG*
Ga0079219_104752742	3300006954	Agricultural Soil	GLAGDVMRDVVGEHSLVATDLLRGLPDAFERARAAARDKFVGWDG*
Ga0099793_105440662	3300007258	Vadose Zone Soil	GFAGDVMRESVGEHSLVATDLLQGLPEAFRCAREAAREKVVCWGG*
Ga0105241_116115182	3300009174	Corn Rhizosphere	AGDIACETMGEQPLVATDLIKALPEAFRRAQKAADEKFVKIAG*
Ga0116138_12382002	3300009552	Peatland	VMRESVGEHSLVATYLLRGLPDAFRRTRETAREKFVPLGR*
Ga0116113_10230781	3300009638	Peatland	AGDVMREIVGEHSLVATDLLKGLPDAFRRTREMAEEKPVRW*
Ga0116216_103127751	3300009698	Peatlands Soil	GLAGDVMRQSVGEHSMVATDLLRGLPEAFLHAQRTAREKFAGWNG*
Ga0074046_102190921	3300010339	Bog Forest Soil	ETVGEHSLVATDLVRGLPDAFDRARQTAREKFVCWEG*
Ga0074044_110073631	3300010343	Bog Forest Soil	HGLAGDVMRETVGEHSLVATDLLAGLPEAFRRTQQAALNKLACW*
Ga0126381_1039359991	3300010376	Tropical Forest Soil	SMIATDLLEGLPEAFRSAWQTAEEKFVRWGGGFSA*
Ga0136449_1016924992	3300010379	Peatlands Soil	AGDVMRESVGEHSMVATDLLRGLPEAFLRAQTTAREKFVGWNG*
Ga0136449_1046878041	3300010379	Peatlands Soil	VGEHSMVATDLLRGLPEAFRRSQKAARESFASWEG*
Ga0126383_102573273	3300010398	Tropical Forest Soil	LHGLAGDVMLKQVGEHSMVATDLLTGLPEAFFATRKTASRKFVPLGA*
Ga0134122_104685453	3300010400	Terrestrial Soil	GDIARESMGEHSLVATDLVKALPPAFRRTREAAAERFSYIQAQP*
Ga0150983_148803592	3300011120	Forest Soil	RETVGEHSMVATDLLRGLPEAFRRTRKTALEKLVSWSG*
Ga0137363_116002542	3300012202	Vadose Zone Soil	AGDIGRERMGEHSLVATDLVKTLPEAFRRARTAAAEKWVKIGYKMGG*
Ga0137399_103923771	3300012203	Vadose Zone Soil	GDVMRESRGEHSLVATDLLEGLPEAFRRTRQAAQERFVRWGA*
Ga0137380_101639484	3300012206	Vadose Zone Soil	RESRGEHSLLATDLLEGLPEAFRRTWQAAQEKFVRWGA*
Ga0137377_100380471	3300012211	Vadose Zone Soil	LAGDIARETMGEQSLVATDLVRSLPQAFHRARRNAQEKLAKICG*
Ga0137385_111577231	3300012359	Vadose Zone Soil	MRESRGEHSLLATDLLEGLPEAFRRTWQAAQEKFVRWGA*
Ga0137398_100227747	3300012683	Vadose Zone Soil	AGDVKRETMGEHSLVATDLLLGLPEAFRRTRHAAQQNWVSW*
Ga0137419_109823151	3300012925	Vadose Zone Soil	GLAGDVMRESVGEHSLVATDLLLGLPEAFQRTREGAREKLVRWNG*
Ga0164301_104709833	3300012960	Soil	GDIARESMGEHSLVATDLVNALPAAFRRTREAAAETFSYIQAQP*
Ga0163162_105624053	3300013306	Switchgrass Rhizosphere	GDIARESMGEHSLVATDLLKALPEAFRRAREAAAERFSYIQAQP*
Ga0182024_127530131	3300014501	Permafrost	VGEHCMVATDLLQGLPKAFRYAQQSAREKFVCWS*
Ga0157376_100656341	3300014969	Miscanthus Rhizosphere	HGLSGDVMRERVGEHSLVATDLLLGLPDAFARALGTAQKKFVGWDG*
Ga0187802_103429072	3300017822	Freshwater Sediment	MRESVGDHSMVATDLLRGVPEAFRRAQRTAREKFVRWDG
Ga0187853_103801841	3300017940	Peatland	RVGEHSLVATDLLRGLPEAFRRTQNAAKENLVGWDG
Ga0187819_103869051	3300017943	Freshwater Sediment	ESVGEHSLVATDLLKALPEAFLRARKSAQEEIVQWEG
Ga0187779_106612422	3300017959	Tropical Peatland	HGLAGDVMRESVGEHSMVATDLLRGLPEAFQRARGTAQEKFVRWDG
Ga0187783_107162311	3300017970	Tropical Peatland	DVMRKHVGEHSMVATDLLTGLPEAFFATRQAAREKFVRLGA
Ga0187780_109815222	3300017973	Tropical Peatland	VGEHSLVATDLLRGLPDAFERARATAENHFVGWEG
Ga0187855_102867841	3300018038	Peatland	DVARETVGEHSMVATDLLQGLPEAFRRTRKTALEKLVSWSG
Ga0187887_105483792	3300018043	Peatland	RESVGEHSMVATDLLRGLPEAFRRARHASKETLVSWEG
Ga0187887_106830112	3300018043	Peatland	VMREIVGEHSLVATDLLKGLPDAFRRTREMAEEKPVRW
Ga0187890_103160232	3300018044	Peatland	DVMRETVGEHSMVATDLLLGLPAAFRRTRKTALEKWVSWSG
Ga0187771_106786013	3300018088	Tropical Peatland	VGEHSLVATDLLRGLPDAFESVRRTAREKFVCWEG
Ga0187770_105891512	3300018090	Tropical Peatland	MREGVGEHAMVATDLVRGLPEAFRRTQATAREKFVCW
Ga0187770_116243782	3300018090	Tropical Peatland	AGDVMREIVGEHSLVATDLLRALPDAFERARRTASEKFVCWEG
Ga0210407_104651372	3300020579	Soil	LAGDVARETVGEHSMVATDLLRGLPEAFRRTRKTALEKLVSWSG
Ga0210400_102253711	3300021170	Soil	AGDVTRETVGEHSLVATDLLRGLPAAFERARQSATAENSVIG
Ga0210405_106107321	3300021171	Soil	GLAGDVMRESVGEHSMVATDLLRGLPEAFLHAQKTAREKFVGWNG
Ga0210387_102116551	3300021405	Soil	DVARETVGEHSMVATDLLRGLPEAFRRTRKTALEKLVSWSG
Ga0210391_113150531	3300021433	Soil	DCVGEHSLVATDLLRGLPQAFQRAREASREKLARWSG
Ga0210402_102817861	3300021478	Soil	AGDVMRESVGEHSMVATDLLRGLPEAFQRARQTAREKFVRWEG
Ga0210402_107702761	3300021478	Soil	DVMRETVGEHSMVATDLLQGLPEAFRRTRDTALEKFVSWSG
Ga0210410_108096661	3300021479	Soil	LAGDVMRECRGEHSLVATDLLEGLPEAFRRTWQAAAEKFVSWGA
Ga0212123_101789762	3300022557	Iron-Sulfur Acid Spring	RERVGEHSLVATDLLRGLPEAFRRTQNAAKENLVGWDG
Ga0242654_102131132	3300022726	Soil	GDVVRESVGEHSMVATDLLQGLPQAFRRVERTARRNFVCWGG
Ga0224564_10754581	3300024271	Soil	GLAGDVMRESVGEHSLIATDLLQGLPGAFRRTREAAKENLVCWGD
Ga0207658_115048032	3300025986	Switchgrass Rhizosphere	DIARESMGEHSLVATDLVKALPPAFRRTREAAAERFSYIQAQP
Ga0209863_102544201	3300026281	Prmafrost Soil	SAGDVMRESVGELPLVATDLLQGLPEGLRRTRRDAEGKIVRWDG
Ga0209648_102036814	3300026551	Grasslands Soil	MRERRGEHSLVATDLLEGLPEAFRRTWQAAQEKFVGWGA
Ga0179587_109787991	3300026557	Vadose Zone Soil	GDVMRESVGEHSLVATDLLQGLPEAFERTREAARQGLVSW
Ga0208732_10284032	3300026984	Forest Soil	HLHGLAGDVMKAIVGEHSMVATDLLQGLPVAYRVMRQAAHDKLVRW
Ga0209220_10037136	3300027587	Forest Soil	DVMRESRGEHSLVATDLLEGLPEAFRRTWQAAQEKFVRWGT
Ga0209221_11356092	3300027609	Forest Soil	GDVMRESVGEHSLVATDLLKGLAQAFRRTQNAAEEKLVCWGG
Ga0209007_11321621	3300027652	Forest Soil	HGLAGDVMREQVGEHSLVATDLLQGLPEAFRRTQNAEQEKLAGW
Ga0209908_101223541	3300027745	Thawing Permafrost	MRESVGENSLVATDLLKGLPEAFRRTQRAEKEKLVRLSG
Ga0209060_101302652	3300027826	Surface Soil	VGEHSMVATELLRGLPGAFRRAQQTARETFVRWDG
Ga0209180_106243011	3300027846	Vadose Zone Soil	LHGLAGDTMRESVGEHSLVATDLLRGLASAFERTREAAQQDLVSL
Ga0209380_103241711	3300027889	Soil	GLAGDVMRETVGEQSLVATDLLRGLPEAFRRAQKAAAEKFVRWDG
Ga0209624_108301642	3300027895	Forest Soil	VMRESVGEYSLVATDLLQGLPEAFRRVWKASQEKLTRW
Ga0209067_103738172	3300027898	Watersheds	VGEHSLVATDLLRGLPDAFQHAQKAALEKFVRWNG
Ga0209698_107947312	3300027911	Watersheds	HGLAGDVMRESVGEHSMVATDLLRGLPEAFWRAQRTAREKFVRWDG
Ga0265356_10344522	3300028017	Rhizosphere	GLAGDVMAEGMGEHSMIATDLLQGLPKAFRRAQQSAREKFVCWGG
Ga0302156_102544881	3300028748	Bog	GDVMRERVGEHSLVATDLLLGLPEAFKRAREAASDKLVSW
Ga0302224_100672024	3300028759	Palsa	DVMRESVGEHSLVATDLLKGLPEAFRRTREMAEEKPVRW
Ga0222749_107645632	3300029636	Soil	MRESVGEHSLVATDLLRGLPEAFWRAQKTAQEKFVRWDG
Ga0311329_101742323	3300029907	Bog	IREKVGEHSLIATDLLLGLPGAFLRTDKMAREKLVSWSS
Ga0311369_101551721	3300029910	Palsa	RETVGEHSMIATDLLTGLPEAFRRAQRAAGEKSVRWDG
Ga0311340_100451451	3300029943	Palsa	HGLAGDVMRETVGEHSMVATDLLKGLPEAFRRARKTALEKLVSWSG
Ga0311340_111660631	3300029943	Palsa	LAGDVMRESVGEHSMVATDLLRGLPEAFRRAQKAAQEKFVRWGG
Ga0311372_119940771	3300030520	Palsa	VIRERVGEHSLVATDLLEGLPEAFRRTREMAEETLVHW
Ga0265460_107335572	3300030740	Soil	LETVGEHSMVATDLLQELPEAFRRTRKTALEKLVSWSG
Ga0265461_136099252	3300030743	Soil	RETVGEHSMVATDLLRGLPEAFRRAQRAAKETLVSWGG
Ga0265763_10154132	3300030763	Soil	GDVMRERVGEHSLVATDLLQGMPAAFRRTLQAAREKLVCW
Ga0170834_1034746452	3300031057	Forest Soil	SVGEHSMVATDLLRGLPEAFRHAQRTALEKFVCWDG
Ga0265760_100045866	3300031090	Soil	ETVGEHSMVATDLLRGLPEAFRRTRKTALEKLVSWSG
Ga0170824_1110147003	3300031231	Forest Soil	HLHGLAGDVMRESVGEHSLVATDLLQGLPGAFEGTREAARQGLVRW
Ga0310686_1062162561	3300031708	Soil	HLHGLAGDVMKAIVGEHSMVATDLLQGLPVAYRVMRQAAQDKLVRW
Ga0307477_104405962	3300031753	Hardwood Forest Soil	GDVMRETLGEHSLVATDLLRGLPAAFERARQSATAENSAIG
Ga0310912_110120392	3300031941	Soil	MSEIGGEHSLVATDLLRGLSDAFERARSASRESLISL
Ga0308176_113878091	3300031996	Soil	DVMREIVGEHSLVATDLLRGLPGAFAGARKAAGEQVVCWRS
Ga0335079_113409752	3300032783	Soil	GDVMRDKLGEHSLVATDLLKGLPEAFRRARQDAQSKLVCWTG
Ga0335080_123127311	3300032828	Soil	EIVGEHSLVATDLLRGLPDAFARARRAAENGFVGWNS
Ga0335072_105250711	3300032898	Soil	SVGEHSMTATDLLQGLPEAFFRAQKTAHEKAFHWEG
Ga0335073_103120731	3300033134	Soil	MRERVGEHSMVATDLLLGLPEAFRRAREKAKVRSICF
Ga0334854_019810_1493_1627	3300033829	Soil	LAGNVMRESVGEHSMVATDLLRGLPQAFRRTQNAAKEKLVCWGA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097692

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign