NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F097618

Metagenome / Metatranscriptome Family F097618

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F097618
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 49 residues
Representative Sequence MGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA
Number of Associated Samples 76
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 80.77 %
% of genes near scaffold ends (potentially truncated) 35.58 %
% of genes from short scaffolds (< 2000 bps) 71.15 %
Associated GOLD sequencing projects 64
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (59.615 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil
(14.423 % of family members)
Environment Ontology (ENVO) Unclassified
(25.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(31.731 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74
1WSSedA2C2DRAFT_10081081
2JGI11641J44799_100541553
3JGI20214J51088_100162103
4JGI26437J51864_1000011914
5Ga0055484_100323141
6Ga0069718_161462282
7Ga0068713_10018174
8Ga0068713_11937531
9Ga0068994_100130622
10Ga0068994_100305371
11Ga0068994_100934901
12Ga0068712_10561453
13Ga0068712_11526681
14Ga0068714_1000446810
15Ga0068714_100206793
16Ga0068714_100382393
17Ga0068714_101174131
18Ga0068714_103535171
19Ga0074469_1025894122
20Ga0074469_110925551
21Ga0079037_1000173198
22Ga0079037_1000409182
23Ga0079037_1004081161
24Ga0079037_1025040791
25Ga0079303_104092901
26Ga0073932_10109608
27Ga0105105_100614783
28Ga0105095_100097583
29Ga0105106_100117641
30Ga0105106_105402761
31Ga0105106_108884001
32Ga0102851_101514522
33Ga0102851_126212691
34Ga0115026_101319313
35Ga0115026_104527143
36Ga0115027_102941221
37Ga0105100_103437711
38Ga0113563_119997061
39Ga0115028_101503222
40Ga0115028_101942721
41Ga0115028_112936872
42Ga0114946_100200613
43Ga0114946_101337713
44Ga0115600_11532151
45Ga0136852_114895602
46Ga0136851_101625792
47Ga0137460_10967682
48Ga0137347_10193002
49Ga0172370_102925361
50Ga0172375_100210355
51Ga0180429_107491981
52Ga0187787_102776512
53Ga0180430_109440511
54Ga0184636_10646693
55Ga0172286_13413411
56Ga0194113_104332961
57Ga0194125_104497071
58Ga0079039_15539991
59Ga0212093_10319146
60Ga0124853_13760712
61Ga0209498_10037213
62Ga0210088_10050623
63Ga0210088_10781643
64Ga0210134_10023542
65Ga0210127_10044441
66Ga0256815_10284813
67Ga0256808_10011944
68Ga0256806_10034413
69Ga0209163_1000248146
70Ga0209164_10033567
71Ga0209164_10237193
72Ga0209164_11082791
73Ga0209164_11170013
74Ga0209286_10359162
75Ga0209592_11315151
76Ga0256868_101925683
77Ga0209706_103992512
78Ga0209397_102851741
79Ga0209293_100629663
80Ga0209293_103906171
81Ga0209450_1000010144
82Ga0208980_100681304
83Ga0208980_104269372
84Ga0209496_100946862
85Ga0209253_104433531
86Ga0209705_100086793
87Ga0134606_100020677
88Ga0316602_100380591
89Ga0315290_107468962
90Ga0315281_103419263
91Ga0316604_105268573
92Ga0316603_123675902
93Ga0316619_107721692
94Ga0316622_1010546421
95Ga0316625_1000614075
96Ga0316625_1007490241
97Ga0316601_1000946531
98Ga0316600_100017595
99Ga0316600_110749911
100Ga0316627_1010634151
101Ga0316629_110638191
102Ga0316626_102869012
103Ga0316626_102951031
104Ga0316628_1015760642
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 64.58%    β-sheet: 0.00%    Coil/Unstructured: 35.42%
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51015202530354045MGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAASequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
59.6%40.4%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Sediment
Freshwater Sediment
Wetland
Sediment
Freshwater Lake Sediment
Freshwater
Freshwater Lake
Sediment
Freshwater Wetlands
Sediment
Marine Sediment
Natural And Restored Wetlands
Wetland
Hot Spring Sediment
Hypersaline Lake Sediment
Soil
Sediment (Intertidal)
Groundwater Sediment
Mangrove Sediment
Soil
Soil
Tropical Peatland
Deep Subsurface
Enrichment Culture
9.6%11.5%2.9%2.9%8.7%2.9%7.7%4.8%14.4%13.5%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
WSSedA2C2DRAFT_100810813300000786WetlandMGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLW
JGI11641J44799_1005415533300002961WetlandMGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA*
JGI20214J51088_1001621033300003432WetlandMGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPECQIGRLWLMDKAA*
JGI26437J51864_10000119143300003910Freshwater Lake SedimentMAEENLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKAA*
Ga0055484_1003231413300004066Natural And Restored WetlandsMGEEKLEKRFEEAEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA*
Ga0069718_1614622823300004481SedimentMGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPQCQIGR
Ga0068713_100181743300005145Enrichment CultureMSEEKAQKLTEDMEVRCDVCRKTFPPSEEGKRCPECGIGRIWSMQKAA*
Ga0068713_119375313300005145Enrichment CultureMGEEKREKSFEDMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA*
Ga0068994_1001306223300005216Natural And Restored WetlandsMGEENLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMEKAA*
Ga0068994_1003053713300005216Natural And Restored WetlandsMGEEKREKGFEGMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA*
Ga0068994_1009349013300005216Natural And Restored WetlandsMGEEKREKGFEDMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA*
Ga0068712_105614533300005252Enrichment CultureMGEEKREKGFEDMEVRCDVCRKTFPLSEEGKRCPACNIGRLWLMDKAA*
Ga0068712_115266813300005252Enrichment CultureMSEERAEKLAEGMEVRCDVCRKTFPLSEAGKQCPECGIGRIW
Ga0068714_10004468103300005254Enrichment CultureMSEERAERLAEATEVRCDVCRKVFPPSEEGRKCPECGIGRLWLMEKAA*
Ga0068714_1002067933300005254Enrichment CultureMEEERAARLTEDSEVRCDVCRKTFPPSEQGKQCPECRIGRLWLMEKAA*
Ga0068714_1003823933300005254Enrichment CultureMSEEKAQKLAEDMEVRCDVCRKTFPPSEEGKRCPECGIGRIWSMEKAA*
Ga0068714_1011741313300005254Enrichment CultureMGEEKREKGFENMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA*
Ga0068714_1035351713300005254Enrichment CultureMSEERAASGSENTEVRCDVCRKTFPAEEQGKQCPECKIGRLWLMEKAVS*
Ga0074469_10258941223300005832Sediment (Intertidal)MGEEKLEKRFEAMEVRCDVCRKTFPLSEEGKKCPECQIGRLWLMDKAA*
Ga0074469_1109255513300005832Sediment (Intertidal)HMSEERAEKFAENMEVRCDVCRKIFPASEEGKRCPECGIGRIWLMEKAA*
Ga0079037_10001731983300006224Freshwater WetlandsMGEEKLEKRFEDTEVRCDICRKTFPLSEEGKKCPECHIGRLWLMDKAA*
Ga0079037_10004091823300006224Freshwater WetlandsMGEQKLEKRFEEVEVRCDICRKIFPLSEEGKKCPECQIGRLWLMDKAA*
Ga0079037_10040811613300006224Freshwater WetlandsLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKAA*
Ga0079037_10250407913300006224Freshwater WetlandsSFSSSLTRRLAMGEEKLEKRFEELEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA*
Ga0079303_1040929013300006930Deep SubsurfaceMGEQKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA*
Ga0073932_101096083300007072Hot Spring SedimentMGDEKREKGFENMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA*
Ga0105105_1006147833300009009Freshwater SedimentMGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPQCQIGRLWLMEKAA*
Ga0105095_1000975833300009053Freshwater SedimentVSLLSLNLYKRRLAMGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPQCQIGRLWLMEKAA*
Ga0105106_1001176413300009078Freshwater SedimentIAVPLFKKLSPVSLLSLNLYKRRLAMGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPQCQIGRLWLMEKAA*
Ga0105106_1054027613300009078Freshwater SedimentMGEEKLEKRFEAMEVRCDICRKTFPLSEEGKKCPECHLGRLWLMDKAA*
Ga0105106_1088840013300009078Freshwater SedimentMGEEKLEKRFEDMEVRCDICRKIFPLSEEGKKCPECHIGCLWLMDKAA*
Ga0102851_1015145223300009091Freshwater WetlandsMAEEKLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKAA*
Ga0102851_1262126913300009091Freshwater WetlandsMAEENLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA*
Ga0115026_1013193133300009111WetlandMGEEKLEKRFEELEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA*
Ga0115026_1045271433300009111WetlandMGEEKLEKRFEDTEVRCDICRKTFPLSEEGKKCPECHIGRLWLMDKAP*
Ga0115027_1029412213300009131WetlandMGEEKLEKRFEEAEVRCDICRKTFPLSEEGKKCPECQIG
Ga0105100_1034377113300009166Freshwater SedimentLAVGEEKLEKRFEDLEVRCDICRKTFPLSEEGKKCPECNIGRLWLMDKAA*
Ga0113563_1199970613300009167Freshwater WetlandsVSLLSLDLYKRRLAMGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPECQIGRLWLMDKAA*
Ga0115028_1015032223300009179WetlandMGEEKLEKRFEELEVRCDICRKTFPLSEEGKKCPECHIGRLWLMDKAP*
Ga0115028_1019427213300009179WetlandMGEEKLEKRFEDTEVRCDICRKTFPLSQEGKKCPECQIGR
Ga0115028_1129368723300009179WetlandVSSFSSSLTRRSAMGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA*
Ga0114946_1002006133300009504SedimentMEEERAARRTEDSEVRCDVCRKTFPPSEQGKQCPECRIGRLWLMEKAA*
Ga0114946_1013377133300009504SedimentMSEEREATRAEDMEVRCDVCRKSFPPSEQGKQCPD
Ga0115600_115321513300009581WetlandVSSYSSSPTRRLAMAEEKLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKAA*
Ga0136852_1148956023300010412Mangrove SedimentSFSSSLPRRFAMGEEKREKGFEDMEVRCDVCRKTFPLSEEGKRCPACNIGRLWLMDKAA*
Ga0136851_1016257923300010413Mangrove SedimentMGQEKLEKRLEAVEVRCDVCRKTFPLSEEGKKCPECQIGRLWLMDKAA*
Ga0137460_109676823300011408SoilMGEEKLEKRFEDLEVRCDLCRKTFPLYEAGKKCPECNIGRLWLMDKAA*
Ga0137347_101930023300012152SoilMGEEKLEKRFEDLEVRCDICRKTFPLSEEGKECPECNIGRLWLMDKAA*
(restricted) Ga0172370_1029253613300013136FreshwaterMGEEKLEKRFEEVEVRCDVCRKTYPLSEEGKRCPECQIGRLWLMEKAA*
(restricted) Ga0172375_1002103553300013137FreshwaterMGEEKLEKRFEEVEVRSDVCRKTYPLSEEGKRCPECQIGRLWLMEKAA*
Ga0180429_1074919813300017960Hypersaline Lake SedimentDMEVRCDVCRKTFPPSEQGKQCPECRIGRLWLMEKAA
Ga0187787_1027765123300018029Tropical PeatlandMGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA
Ga0180430_1094405113300018065Hypersaline Lake SedimentMNEERAARHAEDMEVRCDVCRKTFPPSEQGKQCPECRIGRLWLMEKAA
Ga0184636_106466933300018068Groundwater SedimentMGEEKLEKRFEDLEVRCDICRKTFPLSEEGKECPECNIGRLWLMDKAA
Ga0172286_134134113300019252WetlandGVSSFSSSLTRRLAMGEQKLEKRFEEVEVRCDICRKIFPLSEEGKKCPECQIGRLWLMDKAA
Ga0194113_1043329613300020074Freshwater LakeMGKEKEQKNLEGMEVRCDVCRKTFPVSEEGKKCPDCGIGRLWLMEKAA
Ga0194125_1044970713300020222Freshwater LakeMGKEKEQKNLEGMEVRCDVCRKTFTLSEEGKKCPDCGIGRLWLMEKAA
Ga0079039_155399913300022185Freshwater WetlandsSSPTRRLAMAEEKLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKAA
Ga0212093_103191463300022554Hot Spring SedimentMGDEKREKGFENMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA
Ga0124853_137607123300024056Freshwater WetlandsMGEQKLEKRFEEVEVRCDICRKIFPLSEEEKVPECQIGRLWLMDKAA
Ga0209498_100372133300025135SedimentMEEERAARRTEDSEVRCDVCRKTFPPSEQGKQCPECRIGRLWLMEKAA
Ga0210088_100506233300025948Natural And Restored WetlandsMGEEKLEKRFEEAEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA
Ga0210088_107816433300025948Natural And Restored WetlandsMGEEKREKGFEGMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA
Ga0210134_100235423300025950Natural And Restored WetlandsMGEEKLEKRFEAMEVRCDVCRKTFPLSEEGKKCPECQIGRLWLMDKAA
Ga0210127_100444413300025964Natural And Restored WetlandsMGEEKLEKRFEAMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA
Ga0256815_102848133300026463SedimentMGEEKLEKRFEDVEVRCDICRKTFPLSEEGKKCPECGIGRLWLMDKAA
Ga0256808_100119443300026476SedimentMGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQLGRLWLMDKAA
Ga0256806_100344133300026501SedimentRRLAMGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQLGRLWLMDKAA
Ga0209163_10002481463300027536Enrichment CultureMSEEKAQKLTEDMEVRCDVCRKTFPPSEEGKRCPECGIGRIWSMQKAA
Ga0209164_100335673300027690Enrichment CultureMSEERAERLAEATEVRCDVCRKVFPPSEEGRKCPECGIGRLWLMEKAA
Ga0209164_102371933300027690Enrichment CultureMGEEKREKGFENMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA
Ga0209164_110827913300027690Enrichment CultureMSEEKAQKLAEDMEVRCDVCRKTFPPSEEGKRCPECGIGRIWSMEKAA
Ga0209164_111700133300027690Enrichment CultureMGEEKREKGFEDMEVRCDVCRKTFPLSEEGKRCPACNIGRLWLMDKAA
Ga0209286_103591623300027713Freshwater SedimentMGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPQCQIGRLWLMEKAA
Ga0209592_113151513300027731Freshwater SedimentKRFEDLEVRCDICRKTFPLSEEGKKCPECNIGRLWLMDKAA
Ga0256868_1019256833300027811SoilMGEEKLEKRFEDTEVRCDICRKTFPLSEEGKKCPECHIGRLWLMD
Ga0209706_1039925123300027818Freshwater SedimentMGEEKLEKRFEAMEVRCDICRKTFPLSEEGKKCPECHLGRLWLMDKAA
Ga0209397_1028517413300027871WetlandGVSSFSSSLTRRSAMGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA
Ga0209293_1006296633300027877WetlandRLAMAEEKLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKAA
Ga0209293_1039061713300027877WetlandMGEEKLEKRFEDTEVRCDICRKTFPLSEEGKKCPECHIGRLWLMDKAA
Ga0209450_10000101443300027885Freshwater Lake SedimentMAEENLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKAA
Ga0208980_1006813043300027887WetlandMEEEKLEKCFDEVEVRCDICRKTFPPSEEGKKCPECQIGRLWLMDKAA
Ga0208980_1042693723300027887WetlandMGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLM
Ga0209496_1009468623300027890WetlandMGEEKLEKRFEDTEVRCDICRKTFPLSEEGKKCPECHIGRLWLMDKAP
Ga0209253_1044335313300027900Freshwater Lake SedimentLAVGEEKLEKRFEDLEVRCDICRKNFPLSEEGKKCPECNIGRLWLMDKAA
Ga0209705_1000867933300027979Freshwater SedimentVSLLSLNLYKRRLAMGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPQCQIGRLWLMEKAA
Ga0134606_1000206773300029827Marine SedimentMSEERAERLTEDTEVRCDVCRKTFPPSEEGKRCPECGIGRIWLMEKAA
Ga0316602_1003805913300031577SoilMAEENLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLW
Ga0315290_1074689623300031834SedimentMGEEKLEKRFEDLEVRCDICRKNFPLSEEGKKCPECNIGRLWLMDKAA
Ga0315281_1034192633300032163SedimentLAVGEEKLEKRFEDLEVRCDICRKTFPLSEEGKKCPECNIGRLWLMDKAA
Ga0316604_1052685733300033406SoilMGEEKLEKRFEELEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA
Ga0316603_1236759023300033413SoilMGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPECQIGRLWLMDKAA
Ga0316619_1077216923300033414SoilMGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECHIGRLWLMDKAA
Ga0316622_10105464213300033416SoilMAEEKLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKA
Ga0316625_10006140753300033418SoilMGEQKLEKRFEEVEVRCDICRKIFPLSEEGKKCPECQIGRLWLMDKAA
Ga0316625_10074902413300033418SoilLKRRFAMGEEKLEKRFEDTEVRCDICRKTFPLSEEGKKCPECHIGRLWLMDKAA
Ga0316601_10009465313300033419SoilKRRLAMGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA
Ga0316600_1000175953300033481SoilMAEENLEKRFEEVEVRCDICRKTFPLSQEGKKCPVCQIGRLWLMDKAA
Ga0316600_1107499113300033481SoilRRLAMGEEKLEKRFEELEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA
Ga0316627_10106341513300033482SoilRRLAMGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPECQIGRLWLMDKAA
Ga0316629_1106381913300033483SoilMGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRL
Ga0316626_1028690123300033485SoilYSSSPTRRLAMAEEKLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKAA
Ga0316626_1029510313300033485SoilMAEENLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKA
Ga0316628_10157606423300033513SoilMEEEKLEKCYDEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDK


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