Basic Information | |
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Family ID | F097618 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 104 |
Average Sequence Length | 49 residues |
Representative Sequence | MGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA |
Number of Associated Samples | 76 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 80.77 % |
% of genes near scaffold ends (potentially truncated) | 35.58 % |
% of genes from short scaffolds (< 2000 bps) | 71.15 % |
Associated GOLD sequencing projects | 64 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (59.615 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (14.423 % of family members) |
Environment Ontology (ENVO) | Unclassified (25.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (31.731 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 64.58% β-sheet: 0.00% Coil/Unstructured: 35.42% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Sediment Freshwater Sediment Wetland Sediment Freshwater Lake Sediment Freshwater Freshwater Lake Sediment Freshwater Wetlands Sediment Marine Sediment Natural And Restored Wetlands Wetland Hot Spring Sediment Hypersaline Lake Sediment Soil Sediment (Intertidal) Groundwater Sediment Mangrove Sediment Soil Soil Tropical Peatland Deep Subsurface Enrichment Culture |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
WSSedA2C2DRAFT_10081081 | 3300000786 | Wetland | MGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLW |
JGI11641J44799_100541553 | 3300002961 | Wetland | MGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA* |
JGI20214J51088_100162103 | 3300003432 | Wetland | MGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPECQIGRLWLMDKAA* |
JGI26437J51864_1000011914 | 3300003910 | Freshwater Lake Sediment | MAEENLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKAA* |
Ga0055484_100323141 | 3300004066 | Natural And Restored Wetlands | MGEEKLEKRFEEAEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA* |
Ga0069718_161462282 | 3300004481 | Sediment | MGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPQCQIGR |
Ga0068713_10018174 | 3300005145 | Enrichment Culture | MSEEKAQKLTEDMEVRCDVCRKTFPPSEEGKRCPECGIGRIWSMQKAA* |
Ga0068713_11937531 | 3300005145 | Enrichment Culture | MGEEKREKSFEDMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA* |
Ga0068994_100130622 | 3300005216 | Natural And Restored Wetlands | MGEENLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMEKAA* |
Ga0068994_100305371 | 3300005216 | Natural And Restored Wetlands | MGEEKREKGFEGMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA* |
Ga0068994_100934901 | 3300005216 | Natural And Restored Wetlands | MGEEKREKGFEDMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA* |
Ga0068712_10561453 | 3300005252 | Enrichment Culture | MGEEKREKGFEDMEVRCDVCRKTFPLSEEGKRCPACNIGRLWLMDKAA* |
Ga0068712_11526681 | 3300005252 | Enrichment Culture | MSEERAEKLAEGMEVRCDVCRKTFPLSEAGKQCPECGIGRIW |
Ga0068714_1000446810 | 3300005254 | Enrichment Culture | MSEERAERLAEATEVRCDVCRKVFPPSEEGRKCPECGIGRLWLMEKAA* |
Ga0068714_100206793 | 3300005254 | Enrichment Culture | MEEERAARLTEDSEVRCDVCRKTFPPSEQGKQCPECRIGRLWLMEKAA* |
Ga0068714_100382393 | 3300005254 | Enrichment Culture | MSEEKAQKLAEDMEVRCDVCRKTFPPSEEGKRCPECGIGRIWSMEKAA* |
Ga0068714_101174131 | 3300005254 | Enrichment Culture | MGEEKREKGFENMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA* |
Ga0068714_103535171 | 3300005254 | Enrichment Culture | MSEERAASGSENTEVRCDVCRKTFPAEEQGKQCPECKIGRLWLMEKAVS* |
Ga0074469_1025894122 | 3300005832 | Sediment (Intertidal) | MGEEKLEKRFEAMEVRCDVCRKTFPLSEEGKKCPECQIGRLWLMDKAA* |
Ga0074469_110925551 | 3300005832 | Sediment (Intertidal) | HMSEERAEKFAENMEVRCDVCRKIFPASEEGKRCPECGIGRIWLMEKAA* |
Ga0079037_1000173198 | 3300006224 | Freshwater Wetlands | MGEEKLEKRFEDTEVRCDICRKTFPLSEEGKKCPECHIGRLWLMDKAA* |
Ga0079037_1000409182 | 3300006224 | Freshwater Wetlands | MGEQKLEKRFEEVEVRCDICRKIFPLSEEGKKCPECQIGRLWLMDKAA* |
Ga0079037_1004081161 | 3300006224 | Freshwater Wetlands | LEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKAA* |
Ga0079037_1025040791 | 3300006224 | Freshwater Wetlands | SFSSSLTRRLAMGEEKLEKRFEELEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA* |
Ga0079303_104092901 | 3300006930 | Deep Subsurface | MGEQKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA* |
Ga0073932_10109608 | 3300007072 | Hot Spring Sediment | MGDEKREKGFENMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA* |
Ga0105105_100614783 | 3300009009 | Freshwater Sediment | MGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPQCQIGRLWLMEKAA* |
Ga0105095_100097583 | 3300009053 | Freshwater Sediment | VSLLSLNLYKRRLAMGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPQCQIGRLWLMEKAA* |
Ga0105106_100117641 | 3300009078 | Freshwater Sediment | IAVPLFKKLSPVSLLSLNLYKRRLAMGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPQCQIGRLWLMEKAA* |
Ga0105106_105402761 | 3300009078 | Freshwater Sediment | MGEEKLEKRFEAMEVRCDICRKTFPLSEEGKKCPECHLGRLWLMDKAA* |
Ga0105106_108884001 | 3300009078 | Freshwater Sediment | MGEEKLEKRFEDMEVRCDICRKIFPLSEEGKKCPECHIGCLWLMDKAA* |
Ga0102851_101514522 | 3300009091 | Freshwater Wetlands | MAEEKLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKAA* |
Ga0102851_126212691 | 3300009091 | Freshwater Wetlands | MAEENLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA* |
Ga0115026_101319313 | 3300009111 | Wetland | MGEEKLEKRFEELEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA* |
Ga0115026_104527143 | 3300009111 | Wetland | MGEEKLEKRFEDTEVRCDICRKTFPLSEEGKKCPECHIGRLWLMDKAP* |
Ga0115027_102941221 | 3300009131 | Wetland | MGEEKLEKRFEEAEVRCDICRKTFPLSEEGKKCPECQIG |
Ga0105100_103437711 | 3300009166 | Freshwater Sediment | LAVGEEKLEKRFEDLEVRCDICRKTFPLSEEGKKCPECNIGRLWLMDKAA* |
Ga0113563_119997061 | 3300009167 | Freshwater Wetlands | VSLLSLDLYKRRLAMGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPECQIGRLWLMDKAA* |
Ga0115028_101503222 | 3300009179 | Wetland | MGEEKLEKRFEELEVRCDICRKTFPLSEEGKKCPECHIGRLWLMDKAP* |
Ga0115028_101942721 | 3300009179 | Wetland | MGEEKLEKRFEDTEVRCDICRKTFPLSQEGKKCPECQIGR |
Ga0115028_112936872 | 3300009179 | Wetland | VSSFSSSLTRRSAMGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA* |
Ga0114946_100200613 | 3300009504 | Sediment | MEEERAARRTEDSEVRCDVCRKTFPPSEQGKQCPECRIGRLWLMEKAA* |
Ga0114946_101337713 | 3300009504 | Sediment | MSEEREATRAEDMEVRCDVCRKSFPPSEQGKQCPD |
Ga0115600_11532151 | 3300009581 | Wetland | VSSYSSSPTRRLAMAEEKLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKAA* |
Ga0136852_114895602 | 3300010412 | Mangrove Sediment | SFSSSLPRRFAMGEEKREKGFEDMEVRCDVCRKTFPLSEEGKRCPACNIGRLWLMDKAA* |
Ga0136851_101625792 | 3300010413 | Mangrove Sediment | MGQEKLEKRLEAVEVRCDVCRKTFPLSEEGKKCPECQIGRLWLMDKAA* |
Ga0137460_10967682 | 3300011408 | Soil | MGEEKLEKRFEDLEVRCDLCRKTFPLYEAGKKCPECNIGRLWLMDKAA* |
Ga0137347_10193002 | 3300012152 | Soil | MGEEKLEKRFEDLEVRCDICRKTFPLSEEGKECPECNIGRLWLMDKAA* |
(restricted) Ga0172370_102925361 | 3300013136 | Freshwater | MGEEKLEKRFEEVEVRCDVCRKTYPLSEEGKRCPECQIGRLWLMEKAA* |
(restricted) Ga0172375_100210355 | 3300013137 | Freshwater | MGEEKLEKRFEEVEVRSDVCRKTYPLSEEGKRCPECQIGRLWLMEKAA* |
Ga0180429_107491981 | 3300017960 | Hypersaline Lake Sediment | DMEVRCDVCRKTFPPSEQGKQCPECRIGRLWLMEKAA |
Ga0187787_102776512 | 3300018029 | Tropical Peatland | MGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA |
Ga0180430_109440511 | 3300018065 | Hypersaline Lake Sediment | MNEERAARHAEDMEVRCDVCRKTFPPSEQGKQCPECRIGRLWLMEKAA |
Ga0184636_10646693 | 3300018068 | Groundwater Sediment | MGEEKLEKRFEDLEVRCDICRKTFPLSEEGKECPECNIGRLWLMDKAA |
Ga0172286_13413411 | 3300019252 | Wetland | GVSSFSSSLTRRLAMGEQKLEKRFEEVEVRCDICRKIFPLSEEGKKCPECQIGRLWLMDKAA |
Ga0194113_104332961 | 3300020074 | Freshwater Lake | MGKEKEQKNLEGMEVRCDVCRKTFPVSEEGKKCPDCGIGRLWLMEKAA |
Ga0194125_104497071 | 3300020222 | Freshwater Lake | MGKEKEQKNLEGMEVRCDVCRKTFTLSEEGKKCPDCGIGRLWLMEKAA |
Ga0079039_15539991 | 3300022185 | Freshwater Wetlands | SSPTRRLAMAEEKLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKAA |
Ga0212093_10319146 | 3300022554 | Hot Spring Sediment | MGDEKREKGFENMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA |
Ga0124853_13760712 | 3300024056 | Freshwater Wetlands | MGEQKLEKRFEEVEVRCDICRKIFPLSEEEKVPECQIGRLWLMDKAA |
Ga0209498_10037213 | 3300025135 | Sediment | MEEERAARRTEDSEVRCDVCRKTFPPSEQGKQCPECRIGRLWLMEKAA |
Ga0210088_10050623 | 3300025948 | Natural And Restored Wetlands | MGEEKLEKRFEEAEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA |
Ga0210088_10781643 | 3300025948 | Natural And Restored Wetlands | MGEEKREKGFEGMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA |
Ga0210134_10023542 | 3300025950 | Natural And Restored Wetlands | MGEEKLEKRFEAMEVRCDVCRKTFPLSEEGKKCPECQIGRLWLMDKAA |
Ga0210127_10044441 | 3300025964 | Natural And Restored Wetlands | MGEEKLEKRFEAMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA |
Ga0256815_10284813 | 3300026463 | Sediment | MGEEKLEKRFEDVEVRCDICRKTFPLSEEGKKCPECGIGRLWLMDKAA |
Ga0256808_10011944 | 3300026476 | Sediment | MGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQLGRLWLMDKAA |
Ga0256806_10034413 | 3300026501 | Sediment | RRLAMGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQLGRLWLMDKAA |
Ga0209163_1000248146 | 3300027536 | Enrichment Culture | MSEEKAQKLTEDMEVRCDVCRKTFPPSEEGKRCPECGIGRIWSMQKAA |
Ga0209164_10033567 | 3300027690 | Enrichment Culture | MSEERAERLAEATEVRCDVCRKVFPPSEEGRKCPECGIGRLWLMEKAA |
Ga0209164_10237193 | 3300027690 | Enrichment Culture | MGEEKREKGFENMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA |
Ga0209164_11082791 | 3300027690 | Enrichment Culture | MSEEKAQKLAEDMEVRCDVCRKTFPPSEEGKRCPECGIGRIWSMEKAA |
Ga0209164_11170013 | 3300027690 | Enrichment Culture | MGEEKREKGFEDMEVRCDVCRKTFPLSEEGKRCPACNIGRLWLMDKAA |
Ga0209286_10359162 | 3300027713 | Freshwater Sediment | MGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPQCQIGRLWLMEKAA |
Ga0209592_11315151 | 3300027731 | Freshwater Sediment | KRFEDLEVRCDICRKTFPLSEEGKKCPECNIGRLWLMDKAA |
Ga0256868_101925683 | 3300027811 | Soil | MGEEKLEKRFEDTEVRCDICRKTFPLSEEGKKCPECHIGRLWLMD |
Ga0209706_103992512 | 3300027818 | Freshwater Sediment | MGEEKLEKRFEAMEVRCDICRKTFPLSEEGKKCPECHLGRLWLMDKAA |
Ga0209397_102851741 | 3300027871 | Wetland | GVSSFSSSLTRRSAMGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA |
Ga0209293_100629663 | 3300027877 | Wetland | RLAMAEEKLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKAA |
Ga0209293_103906171 | 3300027877 | Wetland | MGEEKLEKRFEDTEVRCDICRKTFPLSEEGKKCPECHIGRLWLMDKAA |
Ga0209450_1000010144 | 3300027885 | Freshwater Lake Sediment | MAEENLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKAA |
Ga0208980_100681304 | 3300027887 | Wetland | MEEEKLEKCFDEVEVRCDICRKTFPPSEEGKKCPECQIGRLWLMDKAA |
Ga0208980_104269372 | 3300027887 | Wetland | MGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLM |
Ga0209496_100946862 | 3300027890 | Wetland | MGEEKLEKRFEDTEVRCDICRKTFPLSEEGKKCPECHIGRLWLMDKAP |
Ga0209253_104433531 | 3300027900 | Freshwater Lake Sediment | LAVGEEKLEKRFEDLEVRCDICRKNFPLSEEGKKCPECNIGRLWLMDKAA |
Ga0209705_100086793 | 3300027979 | Freshwater Sediment | VSLLSLNLYKRRLAMGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPQCQIGRLWLMEKAA |
Ga0134606_100020677 | 3300029827 | Marine Sediment | MSEERAERLTEDTEVRCDVCRKTFPPSEEGKRCPECGIGRIWLMEKAA |
Ga0316602_100380591 | 3300031577 | Soil | MAEENLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLW |
Ga0315290_107468962 | 3300031834 | Sediment | MGEEKLEKRFEDLEVRCDICRKNFPLSEEGKKCPECNIGRLWLMDKAA |
Ga0315281_103419263 | 3300032163 | Sediment | LAVGEEKLEKRFEDLEVRCDICRKTFPLSEEGKKCPECNIGRLWLMDKAA |
Ga0316604_105268573 | 3300033406 | Soil | MGEEKLEKRFEELEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA |
Ga0316603_123675902 | 3300033413 | Soil | MGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPECQIGRLWLMDKAA |
Ga0316619_107721692 | 3300033414 | Soil | MGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECHIGRLWLMDKAA |
Ga0316622_1010546421 | 3300033416 | Soil | MAEEKLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKA |
Ga0316625_1000614075 | 3300033418 | Soil | MGEQKLEKRFEEVEVRCDICRKIFPLSEEGKKCPECQIGRLWLMDKAA |
Ga0316625_1007490241 | 3300033418 | Soil | LKRRFAMGEEKLEKRFEDTEVRCDICRKTFPLSEEGKKCPECHIGRLWLMDKAA |
Ga0316601_1000946531 | 3300033419 | Soil | KRRLAMGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA |
Ga0316600_100017595 | 3300033481 | Soil | MAEENLEKRFEEVEVRCDICRKTFPLSQEGKKCPVCQIGRLWLMDKAA |
Ga0316600_110749911 | 3300033481 | Soil | RRLAMGEEKLEKRFEELEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDKAA |
Ga0316627_1010634151 | 3300033482 | Soil | RRLAMGEEKLEKRFEEAEVRCDVCRKTFPLSEEGKKCPECQIGRLWLMDKAA |
Ga0316629_110638191 | 3300033483 | Soil | MGEEKLEKRFEEVEVRCDICRKTFPLSEEGKKCPECQIGRL |
Ga0316626_102869012 | 3300033485 | Soil | YSSSPTRRLAMAEEKLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKAA |
Ga0316626_102951031 | 3300033485 | Soil | MAEENLEKRFEEVEVRCDICRKTFPLSQEGKKCPECQIGRLWLMDKA |
Ga0316628_1015760642 | 3300033513 | Soil | MEEEKLEKCYDEVEVRCDICRKTFPLSEEGKKCPECQIGRLWLMDK |
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