Metagenome Family F097552

Overview

Basic Information

• Family ID: F097552
• Family Type: Metagenome
• Number of Sequences: 104
• Average Sequence Length: 42 residues
• Representative Sequence: GEVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHV
• Number of Associated Samples: 87
• Number of Associated Scaffolds: 104

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 98.08 %
• % of genes from short scaffolds (< 2000 bps): 93.27 %
• Associated GOLD sequencing projects: 80
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (82.692 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (9.615 % of family members)
• Environment Ontology (ENVO): Unclassified (50.962 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (65.385 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 48.53%
  β-sheet: 0.00%
  Coil/Unstructured: 51.47%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01384	PHO4	92.31
PF07386	DUF1499	0.96
PF03328	HpcH_HpaI	0.96
PF04784	DUF547	0.96
PF00692	dUTPase	0.96
PF12146	Hydrolase_4	0.96
PF01380	SIS	0.96
PF10609	ParA	0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0306	Phosphate/sulfate permease	Inorganic ion transport and metabolism [P]	92.31
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.96
COG0717	dCTP deaminase	Nucleotide transport and metabolism [F]	0.96
COG0756	dUTP pyrophosphatase (dUTPase)	Defense mechanisms [V]	0.96
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	0.96
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	0.96
COG4446	Uncharacterized conserved protein, DUF1499 family	Function unknown [S]	0.96

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.69 %
Unclassified	root	N/A	17.31 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.69 %
Unclassified	root	N/A	17.31 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.69 %
Unclassified	root	N/A	17.31 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	64.42 %
Unclassified	root	N/A	17.31 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	36.54 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.96 %
Unclassified	root	N/A	17.31 %

Level 6

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.92 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	9.62 %
Unclassified	root	N/A	17.31 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.96 %

Level 7

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.88 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.96 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.92 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	9.62 %
Unclassified	root	N/A	17.31 %

Level 8

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.96 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.88 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.92 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	9.62 %
Unclassified	root	N/A	17.31 %

Level 9

Name	Rank	Taxonomy	Distribution
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.88 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.92 %
Unclassified	root	N/A	17.31 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	9.62 %

Level 10

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.88 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.92 %
Sphingomonas sp. T1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. T1	9.62 %
Stigmatella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella	0.96 %
Unclassified	root	N/A	17.31 %

Level 11

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.88 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.92 %
Sphingomonas sp. T1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. T1	9.62 %
Stigmatella aurantiaca	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca	0.96 %
Unclassified	root	N/A	17.31 %

Level 12

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.88 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.92 %
Sphingomonas sp. T1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. T1	9.62 %
Stigmatella aurantiaca DW4/3-1	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca → Stigmatella aurantiaca DW4/3-1	0.96 %
Unclassified	root	N/A	17.31 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2170459020|G1P06HT02HKEIP	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	576
3300000559|F14TC_100177972	All Organisms → cellular organisms → Bacteria	715
3300000890|JGI11643J12802_10141371	All Organisms → cellular organisms → Bacteria	523
3300004079|Ga0055514_10176916	All Organisms → cellular organisms → Bacteria	594
3300004156|Ga0062589_100216619	All Organisms → cellular organisms → Bacteria	1400
3300004480|Ga0062592_102382439	All Organisms → cellular organisms → Bacteria	530
3300005328|Ga0070676_10063634	All Organisms → cellular organisms → Bacteria	2198
3300005328|Ga0070676_11531422	All Organisms → cellular organisms → Bacteria	514
3300005329|Ga0070683_101296102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	700
3300005330|Ga0070690_100484060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	923

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	1.92%
Environmental	Environmental	42.31%
Host-Associated	Host-Associated	55.77%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	3.85%
Lab Enrichment	Engineered → Lab Enrichment	0.96%
Plants	Host-Associated → Plants	55.77%
Solid Waste	Engineered → Solid Waste	0.96%
Terrestrial	Environmental → Terrestrial	38.46%

Category

Habitat	Taxonomy	Distribution
Defined Media	Engineered → Lab Enrichment → Defined Media	0.96%
Floodplain	Environmental → Terrestrial → Floodplain	0.96%
Freshwater	Environmental → Aquatic → Freshwater	1.92%
Grass	Engineered → Solid Waste → Grass	0.96%
Marine	Environmental → Aquatic → Marine	0.96%
Peat	Environmental → Terrestrial → Peat	0.96%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	35.58%
Roots	Host-Associated → Plants → Roots	2.88%
Sediment	Environmental → Aquatic → Sediment	0.96%
Soil	Environmental → Terrestrial → Soil	36.54%

Type

Habitat	Taxonomy	Distribution
Composting	Engineered → Solid Waste → Grass → Composting	0.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.46%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.96%
Loam	Environmental → Terrestrial → Soil → Loam	8.65%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.88%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	22.12%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	25.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	0.96%
Unclassified	Engineered → Lab Enrichment → Defined Media → Unclassified	0.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.96%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.96%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.62%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.69%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.96%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	22.12%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.46%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	0.96%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.96%
Unclassified	Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified	0.96%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	7.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.77%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Growth Medium	Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Growth Medium	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.96%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.96%
Plant Biomass	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Plant Biomass	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	8.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.96%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.92%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2170459020	Litter degradation NP2	Engineered
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300004079	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleC_D2	Environmental
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2NP_02911650	2170459020	Switchgrass, Maize And Mischanthus Litter	VPWTPWATIDRKELYELIEDVVDKCDDIANSIQGITAKHV
F14TC_1001779721	3300000559	Soil	GEVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHV*
JGI11643J12802_101413712	3300000890	Soil	TPIGYIDRKELYELIERVVDKCDDVANVVQTVTAKHV*
Ga0055514_101769161	3300004079	Natural And Restored Wetlands	LRAGKLDTIGYVDRKELYELVEDVVDKCDDIANTIQSITAKHV*
Ga0062589_1002166191	3300004156	Soil	RLRAQLRAGEVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHA*
Ga0062592_1023824391	3300004480	Soil	QVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHA*
Ga0070676_100636344	3300005328	Miscanthus Rhizosphere	TQLRAGEVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHV*
Ga0070676_115314222	3300005328	Miscanthus Rhizosphere	LRAQLQAGQVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHA*
Ga0070683_1012961021	3300005329	Corn Rhizosphere	LRSGMVDTVAYIDRKELYEQLEDVVDKCDDIANAIQAITAKHV*
Ga0070690_1004840601	3300005330	Switchgrass Rhizosphere	LRAGEIDTIGYIDRKELFELIEDVVDKCDDVANAIQSITAKHV*
Ga0070680_1018301911	3300005336	Corn Rhizosphere	SGALAPIAYLDRKEVYELIERVVDKCDDVANVIQTVTAKHV*
Ga0070669_1004168151	3300005353	Switchgrass Rhizosphere	LRAQVTSGELDTIGYIDRKEIYELVEDVVDICDDVANAIQTITAKHV*
Ga0070693_1000771291	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	GALNAIGYIDRKELYELIERVVDKCDDVANVVQTVTAKHV*
Ga0070664_1007365712	3300005564	Corn Rhizosphere	IGYIDRKELYELIENVVDKCDDVANAIQSITAKHA*
Ga0068851_107877292	3300005834	Corn Rhizosphere	KSGEIDTLGYVDRKEIYEIVEDVVDKCDDVANAIQTITAKHV*
Ga0068858_1020830011	3300005842	Switchgrass Rhizosphere	ETIAYLDRKELYELVESVVDKCDDIANAVQSVTTKHV*
Ga0097621_1010135122	3300006237	Miscanthus Rhizosphere	SGLLALRLDLREGRVDTISYIDRKELFELIESVVDKCDDVANAVESIAAKHV*
Ga0097621_1010302561	3300006237	Miscanthus Rhizosphere	IGYIDRKELYELIENVVDKCDDVANAIQSITAKHV*
Ga0068871_1008235132	3300006358	Miscanthus Rhizosphere	DTIGYIDRKELYELVENVVDKCDDIANSIQSITAKHV*
Ga0079220_118965631	3300006806	Agricultural Soil	AQLRAGEIDTIAYIDRKELYELLEEVVDKCDDVANALQSITAKHV*
Ga0075436_1007023122	3300006914	Populus Rhizosphere	LRAGEVDTIGYIDRKELYELIENVVDKTDDVANAIQSITAKHA*
Ga0075435_1020080122	3300007076	Populus Rhizosphere	RAGEIDTIAYIDRKELYELLEEVVDKCDDVANILQSITAKHV*
Ga0111539_111617262	3300009094	Populus Rhizosphere	RSELGSGALDTIGYVDRKELYELIERVVDKCDDVANVVQTVTAKHV*
Ga0075418_130182092	3300009100	Populus Rhizosphere	LSRLRIQLRGGEIDTIAYIDRKELYELLEEVVDKCDDVANALQSVTAKHV*
Ga0105248_110894341	3300009177	Switchgrass Rhizosphere	QLKAQQVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHA*
Ga0105238_106278771	3300009551	Corn Rhizosphere	THLRAQLQAGQVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHA*
Ga0105249_124121452	3300009553	Switchgrass Rhizosphere	LRAGEVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHV*
Ga0137380_114414632	3300012206	Vadose Zone Soil	AQLRRGEVDTIGYIDRKELYELIEDVVDKCDDVANAVQTITAKHA*
Ga0137378_108752321	3300012210	Vadose Zone Soil	AQLRRGEVDTIGYIDRKELYELIEDVVDKCDDVANTVQAITAKHA*
Ga0157316_10358961	3300012510	Arabidopsis Rhizosphere	ELGAGALNPIGYLDRKELYELIERVVDKCDDVANVVQTVTAKHV*
Ga0157290_104391991	3300012909	Soil	TIGYIDRKELYELIEDVVDKCDDVANAVQSIIAKHA*
Ga0164300_102796061	3300012951	Soil	PIGYLDRKELYELIERVVDKCDDVANVVQTVTAKHV*
Ga0164300_105977082	3300012951	Soil	HLRAQLRAGEVDTIRYIDLKELYELIEDVVDKCDDVANAVQSITAKHV*
Ga0164298_103771632	3300012955	Soil	RAQLRAGEIDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHA*
Ga0164299_111346951	3300012958	Soil	TNLRAQLKAQQVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHA*
Ga0164304_116906341	3300012986	Soil	GYLDRKELYELIERVVDKCDDVANVIQTVTAKHV*
Ga0164305_112642942	3300012989	Soil	GGGTLNVVGYIDRKELYELIERVVDKCDDVANVVQTVTAKHV*
Ga0157373_106307641	3300013100	Corn Rhizosphere	GYLDRKELYELIERVVDKCDDVANVVQTVTAKHV*
Ga0157370_119561081	3300013104	Corn Rhizosphere	LDTLGYIDRKEIYEQLEDVVDRCDDVANTVQAITAKHA*
Ga0157369_122202882	3300013105	Corn Rhizosphere	RLDTLGYIDRKEIYEQLEDVVDRCDDVANTVQAITAKHA*
Ga0182008_104351722	3300014497	Rhizosphere	GLRQGDLDTVGYLDQKELYEWIERVVDKCDDVANQIQQITAKHV*
Ga0132256_1023572822	3300015372	Arabidopsis Rhizosphere	RELGSGALAPIAYLDRKEVYELIERVVDKCDDVANVIQTVTAKHV*
Ga0132256_1027856712	3300015372	Arabidopsis Rhizosphere	GEIDTVGYIDRKELFELIENVVDKCDDVANAIQSITAKHV*
Ga0132257_1007996421	3300015373	Arabidopsis Rhizosphere	LRTGEVDTIRYIDLKELYELIEDVVDRCDDVANAVQSITAKHV*
Ga0132255_1004348221	3300015374	Arabidopsis Rhizosphere	RLRTQLRAGEIDTVGYIDRKELFELIENVVDKCDDVANAIQSITAKHV*
Ga0132255_1013541352	3300015374	Arabidopsis Rhizosphere	GYIDRKELYELIERVVDKCDDVANVVQTVTAKHV*
Ga0187823_103042842	3300017993	Freshwater Sediment	RAGEIDTLGYLDRKELLELLENVVDKCDDIANVIQSITAKHA
Ga0184609_102941052	3300018076	Groundwater Sediment	RLRAQLRAGEVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHV
Ga0193721_10917211	3300020018	Soil	LRAQLRAGEVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHV
Ga0207666_10168982	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	LNVVGYIDRKELYELIERVVDKCDDVANVVQTVTAKHV
Ga0207656_106234751	3300025321	Corn Rhizosphere	RAGEVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHA
Ga0207642_101968712	3300025899	Miscanthus Rhizosphere	LRAGEVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHA
Ga0207680_101180351	3300025903	Switchgrass Rhizosphere	LQAGQVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHA
Ga0207680_104123982	3300025903	Switchgrass Rhizosphere	LRAQLRAGEVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHA
Ga0207680_112414252	3300025903	Switchgrass Rhizosphere	IGYIDRKEVYELIERVVDKCDDVANVVQTVTAKHV
Ga0207685_104580792	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	NAIGYIDRKELYELIERVVDKCDDVANVVQTVTAKHV
Ga0207645_100720051	3300025907	Miscanthus Rhizosphere	RLRTQLRAGEVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHV
Ga0207645_102693681	3300025907	Miscanthus Rhizosphere	RTQLKSGEIDTLGYVDRKEIYEIVEDVVDKCDDVANAIQTITAKHV
Ga0207705_104220472	3300025909	Corn Rhizosphere	VDTIGYIDRKELYELVENVVDKCDDVANAIQTITAKHA
Ga0207705_112139061	3300025909	Corn Rhizosphere	TVGYIDRKEIYELLEDGVDKCDDISNAVQAITAKHV
Ga0207649_102528201	3300025920	Corn Rhizosphere	QPIGYLDQKELFEWIERVVDKCDDVANQIQTITAKHV
Ga0207649_106857262	3300025920	Corn Rhizosphere	PIGYLDRKELYELIERVVDKCDDVANVVQTVTAKHV
Ga0207652_103902661	3300025921	Corn Rhizosphere	GRLQPIGYLDQKELFEWIERVVDKCDDVANQIQTITAKHV
Ga0207650_104439351	3300025925	Switchgrass Rhizosphere	VTRVRAQLRAGEIDLIDYIDQKELYELIENVVDKCDDVANAIQAITAKHV
Ga0207700_104564541	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	DPIGYLDQKELFEWIERVVDKCDDVANQIQTITAKHV
Ga0207644_106879162	3300025931	Switchgrass Rhizosphere	ALRADLREGRLDTLGYIDRKEIYEQLEDVVDRCDDVANTVQAITAKHA
Ga0207690_112216211	3300025932	Corn Rhizosphere	LDTIGYLDQKELYEWIERVVDKCDDVANQIQTITAKHV
Ga0207690_114777451	3300025932	Corn Rhizosphere	AGRLQPIGYLDQKELFEWIERVVDKCDDVANQIQTITAKHV
Ga0207686_109917842	3300025934	Miscanthus Rhizosphere	IGYIDRKEIYELIEDVVDICDDVANAIQTITAKHV
Ga0207711_116216172	3300025941	Switchgrass Rhizosphere	VDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHA
Ga0207661_113551792	3300025944	Corn Rhizosphere	LRSGMVDTVAYIDRKELYEQLEDVVDKCDDIANAIQAITAKHV
Ga0207667_111090081	3300025949	Corn Rhizosphere	LRAGEVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHV
Ga0207712_109520432	3300025961	Switchgrass Rhizosphere	QVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHA
Ga0207668_100525645	3300025972	Switchgrass Rhizosphere	DAIGYIDRKELYELIENVVDKCDDVANAIQSITAKHA
Ga0207640_115471022	3300025981	Corn Rhizosphere	IGYLDRKELYEWIERVVDKCDDVANQLQTITAKHV
Ga0207640_116880682	3300025981	Corn Rhizosphere	GELDTIGYIDRKEIYELIEDVVDICDDVANAIQTITAKHV
Ga0207703_101594313	3300026035	Switchgrass Rhizosphere	AGELDTIGYIDRKELYELVENVVDKCDDIANSIQSITAKHV
Ga0207639_115705082	3300026041	Corn Rhizosphere	LTALRTELRDGRLDTLGYIDRKEIYEQLEDAVDRCDDVANTVQAITAKHA
Ga0207678_108602022	3300026067	Corn Rhizosphere	EIDTIAYLDRKELYELIENVVDKCDDIANAVQAITTKHV
Ga0207675_1021139701	3300026118	Switchgrass Rhizosphere	EVDTIRYIDLKELYELVEDVVDRCDDVANAIQSITAKHV
Ga0210000_10032294	3300027462	Arabidopsis Thaliana Rhizosphere	SELGSGVLTPIGYIDRKELYELIERVVDKCDDVANVVQTVTAKHV
Ga0209254_101605353	3300027897	Freshwater Lake Sediment	IDTIGYVDRKELYELVENVVDKCDDIANAVQTITAKHV
Ga0268266_107510212	3300028379	Switchgrass Rhizosphere	GAVDTIGYLDRKELYELIENVVDKCDDVSNAIQSITAKHV
Ga0268266_113267291	3300028379	Switchgrass Rhizosphere	RAGEVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHV
Ga0268265_101750333	3300028380	Switchgrass Rhizosphere	VTSGELDTIGYIDRKEIYELVEDVVDICDDVANAIQTITAKHV
Ga0268265_126843051	3300028380	Switchgrass Rhizosphere	IGYLDRKELYELIERVVDKCDDVANVVQTVTAKHV
Ga0310821_1003111	3300031145	Growth Medium	EIDPLDYIDRKEILEHLEAVIDKCDDVANELQAVTAKHV
Ga0307498_104775531	3300031170	Soil	LRAQLRAGKVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHA
Ga0310835_1216491	3300031181	Plant Biomass	ADVCFDQALTRLRARARAGEIDPLDYIDRKEILEHLEAVIDKCDDVANELQAVTAKHV
Ga0310813_111101141	3300031716	Soil	NVVGYIDRKELYELIERVVDKCDDVANVVQTVTAKHV
Ga0308175_1001398951	3300031938	Soil	IRSELREGRLDAIGYLDQKELYEWIERVVDKCDDVANQLQTITAKHV
Ga0308175_1022232001	3300031938	Soil	RSELREGQLDAIGYLDQKELYEWIERVVDKCDDVANQLQTITAKHV
Ga0308174_103365802	3300031939	Soil	VAYIDRKELYEQLEDVVDKCDDIANSIQAITAKHV
Ga0310885_107209251	3300031943	Soil	LNPIGYLDRKELYELIERVVDKCDDVANVVQTVTAKHV
Ga0308176_101058761	3300031996	Soil	GQLDAIGYLDQKELYEWIERVVDKCDDVANQLQTITAKHV
Ga0310906_104428771	3300032013	Soil	RAGEIDTIGYIDRKELYELLEHVVDKCDDIANAVQSITTKHV
Ga0310906_112976841	3300032013	Soil	IAYIDRKELYEHIENVVDKCDDVANAIQSITAKHA
Ga0308173_107851592	3300032074	Soil	GEVDTIAYLDRKELYELVENVVDKCDDIANAIQSITAKHV
Ga0308173_123703052	3300032074	Soil	RLRAQVRMGEIDLIGYIDQKELYELTEHVVDKCDDVANAVQAITAKHV
Ga0335085_121929721	3300032770	Soil	VDTIGYIDRKELFELIEDVVDKCDDVANAVESITAKHV
Ga0326730_10788972	3300033500	Peat Soil	IGYIDRKELYELIEGVVDKCDDVANTVQAITAKHA
Ga0247829_105859782	3300033550	Soil	LVDDALDTIGYVDRKELYELIERVVDKCDDVANVVQTVTAKHV
Ga0364943_0430684_3_131	3300034354	Sediment	RAGEVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHG
Ga0370497_0058634_3_152	3300034965	Untreated Peat Soil	TQLRAQLREGKVDTIGYIDRKELYELIENVVDKCDDVANAIQSITAKHA